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مقارنة التغيرات الحيوية و الجزيئية لبعض انواع خميرة المبيضات الحساسة و المقاومة لبعض المضادات الفطرية

Author name: رائد علي حسين
Supervisor name: عدنان حمد الحمداني
General topic: Biology
Specific topic: Microbiology - Fungi
Degree: Doctorate
Language: English
University location: Najaf
First pages:

دراسة تاثير المضاد الحيوي ومحددات عوامل الضراوة في بكتريا المكورات المعوية المعزولة من المرضى المصابين بالبيلا البيكتيرية في النجف الاشرف == Study of Antibiotic Susceptibility and Virulence Determinants among Enterococcus faecalis Isolated from Patients with Significant Bacteriuria in Najaf

Author name: كوثر عدنان حسن الياسري
Supervisor name: علي محسن المحنة
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Najaf
First pages:

تاثير السماد العضوي المتحلل ووزن التقاوي وحامض الاسكوربيك على نمو وحاصل نبات البطاطا Solanum tuberosum L. == Effects of Compost, Tuber Seed Weight, and Ascorbic Acid on Growth and Yield of Potato Plant (Solanum tuberosum L

Author name: منصور عبد ابوحنة
Supervisor name: ثامر خضير مرزة
General topic: Biology
Specific topic: Plant - Physiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:

دراسة جزيئية ومناعية لفايروس النورو والفايروس الغدي نمط 40 و41 في الاطفال المصابين بالاسهال == Molecular and Immunological Study of Norovirus and Adenovirus types 40 and 41 in Diarrheic Children

Author name: رمله احمد محمد حسن العميدي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت هذه الدراسة الى التحري عن فايروسي النورو والفايروس الغدي نمط 40 / 41 في الاطفال المصابين بالاسهال واجراء تحليل لمعدل الاصابة وطبيعتها ودراسة الطبيعة الجزيئية للفايروسين وكذلك التحري عن قدرة الفايروسين على حث الجهاز المناعي وتحديد بعض الحركيات الخلويه عند الاطفال المصابين بالفايروسين.بالاضافة الى دراسة بعض ملامح الاصابه مثل تغاير الفصول والعمر وتحديد افضل الطرق لتشخيص الفايروسين. اجريت الدراسة الحالية في محافظة النجف الاشرف /مستشفى الزهراء التعليمي للولادة والاطفال خلال الفترة من كانون الثاني2014 الى كانون الاول 2014 والتي تضمنت 314 عينه من البراز والدم من الاطفال المصابين بالاسهال والذين تتراوح اعمارهم بين شهر الى خمسة سنوات.حيث اعتمد التحري في عينات البراز استخدام اختبار الكروماتوغرافيا المناعي السريع للكشف عن المستضدات الفايروسية للفايروسين النورو والغدي نمط 40 / 41.كما تم تاكيد العينات الموجبة بواسطة تقنية PCR Real Time لفايروس النورو تقنية PCR للفايروسالغدي نمط40 / 41،والتي اظهرت فيها النتائج بان معدل الاصابة كان 11.7% لفايروس النوروو8.9% للفايروس الغدينمط 40 / 41.كذلك تم فحص العينات الموجبة بواسطة المجهر الالكتروني والتي بينت مظهر للفايروسين في عينات البراز . وتشير الدراسة الى ان التقنيات الجزيئية المستخدمة في فحص العينات هي الاكثر كفاءة للتشخيص الروتيني للفايروسين مقارنة مع المجهر الالكتروني لتشخيص عينات الاسهال.وطبقا للفئات العمرية ،اظهرت النتائج ان الفئة العمرية 13 - 24 شهر سجلت ارتفاع عالي للاصابة بالفايروسين النورو والغدينمط 40 / 41.الحالات الايجابية كانت بين الاطفال الذين يتغذون على الحليب الجاف الاصطناعي (31 حاله) مقارنة مع الرضاعة الطبيعية من الام (14 حاله).اما نتائج الاعراض السريرية في الاطفال المصابين بالفايروسين فاظهرت ان كل الحالات تبين وجود اسهال من النوع المائي المخاطي وبنسبة 100% يليها الالم البطن بنسبة 94.5% و82.1 %،التقيؤ بنسبة 81 % و78.5 % واخيرا الحمى بنسبة 78.3% و71.1 % لكلا من النورو والغدي نمط 40 / 41 على التوالي. كما كشفت الدراسة الحالية بان معدل الاصابة المرتفع لفايروس النوروكان من شهر كانون الثاني الى اذار والتي كانت بنسبة 81%من الحالات الموجبة ، اما بالنسبة لفايروسالغدينمط 40 / 41كان معدل الاصابة المرتفع من شهر كانون الثاني الى نيسان والتي كانت بنسبة 89.2% من الحالات الموجبة. كما اظهرت النتائج وجود ارتفاع كبيرفيالحركيات الخلويه (السايتوكينات) لمصل الاطفال المصابين مقارنة مع السيطرة. وفقا للفئات العمرية ،اظهرت الفئة( 49 - 60) شهر ارتفاع عالي في مستويات الانترفيرون كاما ، الانترلوكين - 6((IL - 6 والانترلوكين - 12 (12 IL - (حيث كانت للفايروس النورو(90.8, 56.7, 84.3) جزء من الغرام /مل على التوالي،بينما كانت لفايروسالغدي(106.5, 59, 87.5)جزء من الغرام /ملعلى التوالي مقارنة مع مجموعة السيطرة. | Norovirus and adenovirus types (40 and 41) are the important causes of gastroenteritis infections in children worldwide. The present study was designed to determine the incidence and nature of infection of norovirus and adenovirus types (40 and 41) at molecular and immunological levels, as well as some features such as seasonal variation , age distributions and detected the most effective and suitable method for diagnosis of the two viruses . The study was carried out in Al - Najaf province, in AL - Zahra teaching hospital for maternity and children, during the period from January, 2014 to December, 2014. Stool and blood samples were collected from 314 children with diarrhea, their age range (from 1months to 5 years). Immunochromatographic assay for norovirus and adenovirus used to detect their antigens in stool samples, the positive results were confirmed by reverse transcriptase real time PCR technique for norovirus and polymerase chain reaction technique for adenovirus types (40 and 41), which showed incidence of 11.7% and 8.9% for norovirus and adenovirus, respectively. Transmission electron microscopy examination gave clear positive norovirus and adenovirus types (40 and 41) appearance in diarrheal stool samples .The study indicates that molecular methods are most suitable and sufficient tests for routine diagnosis of norovirus and adenovirus types (40 and 41) as compared to transmission electron microscopy analysis for diarrheal samples. According to age groups, the results showed that the majority of infections with norovirus and adenovirus were recorded among age group (13 - 24) months. The positive cases were highly among infants fed with bottle fed (31 cases) compared with infants fed with breast fed (14 cases). Regarding the clinical features of children with viral diarrheal infections , the results showed that all of the cases of both viruses complained of watery or mucosal consistence stool (100%) followed by abdominal pain (94.5%) and (82.1%), vomiting (81%) and (78.5%) , and fever (78.3%) and (71.4%) for norovirus and adenovirus positive children respectively. The present study also revealed that a higher incidence of norovirus was detected from January - March 2014, when it was found in 81% (30/37) of the positive cases, whereas the incidence of adenovirus was higher from January - April 2014, during which it was found in 89.2% (25/28) of the positive cases. The current study for cytokines profile detection showed that significant elevation in patients with norovirus and adenovirus than control. The age groups 49 - 60 months have shown a high level in cytokines Interferon gamma, Interleukin - 6 and Interleukin - 12 with concentration were (84.3, 56.7, 90.8) pg./ml , respectively for norovirus while adenovirus were (87.5, 59, 106.5) pg./ml , respectively as compared with control group . Conclusion of the study shows incidence norovirus genotypeII (GII) and adenovirus types (40 and 41) by rapid chromatographic test from infected children in Al - Najaf province. The study indicates that molecular techniques are most suitable and sufficient tests alternatively for transmission electron microscopy when there is good facility and both can replaced by rapid chromatographic test . Interferon gamma, Interleukin - 6 and Interleukin - 12 were increased in all patients with norovirus and adenovirus infections and showed high level in age group (49 - 60) months

عزل وتشخيص المبيضات من المرضى المصابين بداء السلاق الفموي في محافظة النجف الاشرف مع دراسة جزيئية لبعض عوامل الضراوة == Isolation And Identification of Candida Spp. From Patients With Oral Thrush In Al - Najaf Province And Molecular Study of Some Virulence Factors

Author name: ايهاب يحيى جابرالعلياوي
Supervisor name: فاطمة عبد الحسين التميمي
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: تشمل هذه الدراسة بعض المعايير السريرية لمرضى نقص المناعة (مرض السكري والسرطان وزرع الكلى)، والمصابين بداء المبيضات الفموي والتي تضمنت العمر والجنس. الهدف من هذه الدراسة هو عزل وتشخيص انواع المبيضات. بطرق مختلفة بما في ذلك التشخيص المباشر، والتحضين في الم | The present study was conducted to isolation and identification of Candida spp. Isolated from immunocompromised patients with (Diabetes, Cancer & Kidney transplant) by different identification methods including direct examination, laboratory culture, biochemical tests and molecular method using polymerase chain reaction (PCR) technique and determine the virulence factors phenotypic to Candida spp. and genetic polymorphism in Candida albicans in secreted aspartyl proteinase (SAP2). During the period from October 2013 to February 2014, a total of 140 oral swab were collected from immunocompromised patients with attending to the three center in AL - Sadder Medical City (Oncology center and kidney center and Center for Diabetes and Endocrinology).In AL - Najaf Governorate, the samples were collected as following : - 110 mouth swabs from patients suffering from leukemia, prostate, stomach and bowel cancer, also 10 mouth swabs from kidney transplant patients and 20 mouth swabs from diabetes. The percentage of female to male was as following, female (86) 64(72.7%) infected, 22(42.3%) uninfected and male (54) 30(57.7%) uninfected, 24(27.3%) infected, with age range between (5 - 64) years. In this study, the results show that the incidence of candidiasis in women was higher than the male also the most cases of candidiasis in patients age range between (45 - 54) years. The results of the present study reveal that the prevalence of oral candidiasis from patient with cancer was more than diabetes & kidney transplant patients which was 72(81.18%), 12(13.65%) & 4(4.54%) respectively. When culturing oral samples on the primary isolation media Sabouroud dextrose agar (SDA) and the secondary media on CHROM agar, The results reveal the presence of 88 isolates belong to Candida spp.which include : - 42 (47.68%) belong to Candida albicans, 20 (22.72%) belong to Candida. dubliniensis, 18 (20.5%)belong to Candida krusei, 6 (6.8%) belong to Candida glabrata & 2 (2.3%) belong to Candida parapsilosis. According to this result, Candida albicans was found the most frequently isolated species and the occurrence of the other non - albicans isolates such as Candida dubliniensis and which followed Candida albicans in frequency of the isolates in oral candidiasis. In this study, the ability of C.albicans & non - albicans was tested to produce some virulence factors such as production of enzymes phospholipase, lipase, germ tube, chlamydospore & biofilms when culturing Candida spp. on different media. The results of the culture show that Candida albicans produces all virulence factor included germ tube, chlamydospore, biofilms & phospholipase. Some species share several phenotypic characteristics ability to produce enzymes of phospholipase such as C.krusei while C.dubliniensis produce chlamydospore, when culturing in the Casein agar & produce biofilms, In addition the molecular tests to was used for Candida albicans confirm the ability to secreted aspartyl proteinase (ASP2). This study showed the amplified from the Candida spp. as following : - C.albicans 306 bp, C.glabrata 594 bp, C.parapsliosis 387 bp, C.krusei 651 bp & C.dubliniensis 451 bp.

تقييم الاستجابة المناعية عند المرضى المصابين بالجرب في محافظة النجف == Evaluation of Immune Response In Scabietic Patients In Najaf Governorate

Author name: ملاك ماجد عبد الامير الموسوي
Supervisor name: هادي رسول حسن | ازر هادي ملوكي
General topic: Biology
Specific topic: Microbiology - Parasites
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة الحالية في محافظة النجف في الفترة الممتدة مابين شباط 2012 لغاية تشرين الثاني 2013 في العيادة الاستشارية للجلدية في مدينة الصدر الطبية وكليتي العلوم والتربية للبنات في جامعة الكوفة. كان عدد المصابين بالجرب الذين ارتادوا العيادة الاستشارية لل | The present study was carried out in Najaf governorate, during the period from February 2012 till November 2013 in Dermatology Outpatient Clinic in Al - Sader Medical City, College of Science and College of Education for Girls in Kufa University. The number of scabietic patients who attended the outpatient clinic during February to November 2012 were 300 (168 males and 132 females). Their ages ranged from 10 to 65 years. They were included to show the prevalence of scabies. Sixty scabietic patients (out of 300 patients) who did not have allergic diseases, helminthic infections, previous attack with scabies, and/or getting any antihistamines drugs were included for human IL - 1?, TNF - ?, IL - 4, IL - 5 and total IgE assays using ELISA technique; superoxide dismutase (SOD) activity assay and eosinophils(%). These assays were applied on scabietic patients (who were divided according to onset of symptoms or duration of scabies symptoms into early and late scabietic patients) as well as healthy controls.Also Sarcoptes scabiei mite proteins were extracted. Then heat stable mite proteins concentration was determined by Bradford’s method. SDS - Polyacrylamide Gel Electrophoresis (SDS - PAGE) analysis was used. The activity of mite allergens was assayed by skin prick test (SPT) in 10 scabietic patients and 5 controls with 1.2 ?g/ml and 2.4 ?g/ml. House dust mite (HDM) antigens were skin prick tested in patients with scabies and controls.The prevalence of scabies in current study constituted 6.54% from all the dermatoses which attended the clinic. The males represented 56% and females were 44%. The age group (10 - 19) years was the highest prevalence of scabies (41.7%). Early scabietic patients represented 72% versus late scabietic patients were 28%. The results revealed that a highly significant elevation (p< 0.001) in serum cytokines (IL - 1?, TNF - ?, IL - 4 and IL - 5) as well as IgE, SOD and eosinophils (%) in the two groups of scabietic patients in comparison to the controls.Results of correlation demonstrated that IgE, SOD and eosinophils (%) were positively and significantly correlated (p< 0.001) with the studied cytokines in early, late scabietic and control groups. IgE was positively correlated with IL - 1?, TNF - ?, IL - 4 and IL - 5 in early scabietic patients, whereas, it had negative correlation with IL - 1?, TNF - ?, and positive correlation with IL - 4 and IL - 5 in late ones. SOD showed negative correlation with IL - 1? and TNF - ?, and positive correlation appeared with IL - 4 and IL - 5 in both scabietic patients. Eosinophils (%) were positively correlated with all the studied cytokines in two groups of scabietic patients.The results also revealed that SDS - PAGE profile of the parasite heat stable proteins consisted of protein bands with molecular weights ranged from less than 10 to over than 100 kDa. Skin test demonstrated that (7/10, 70%) and (8/10, 80%) of scabietic patients had a positivity against 1.2 ?g/ml and 2.4 ?g/ml of sarcoptic mite extracts, respectively when prick tested. HDM extract was found to be positive in (4/10, 40%) of scabietic patients; while controls revealed negative result.It can be concluded that scabies affect TH1 and TH2 immune response as well as SOD activity and eosinophils. Sarcoptic proteins contain heat stable allergens which able to cause immediate type - 1 hypersensitivity when 1.2?g/ml of mite protein is skin prick tested, and there is a cross reactivity between Sarcoptes scabiei and HDM allergens

تقييم بعض جينات المقاومة للمضادات الحيوية في عزلات الكلبسيلا == Evaluation of Some Antibiotic Resistance Genes In Klebsiella Isolates

Author name: زاهد سعدون عزيز
Supervisor name: عباس شاكر جواد المحنة | سلمان عزيز عدوس
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت الدراسة الحالية الى تقييم انتشار جينات البيتا لاكتاميز ? - lactamases ومنها جينات البيتا لاكتاميز الواسعة الطيف lactamases - Extended Spectrum ? وجينات اخرى مثل جينات المقاومة للكوينولونات Quinolones المرتبطة بالبلازميدات plasmid mediated quinolones | The study aimed to evaluate the prevalence of plasmid mediated ? - lactamases including Extended Spectrum ? - lactamases and non - lactamases and study the horizontal gene transfer. A total of 800 of urine samples were taken from patient suffering from urinary tract infections had been collected during a period from February, to September of 2012, from the hospitals of AL - Najaf province. All the samples were cultured on MacConkey agar. From those 300 samples gave positive bacterial growth , 250 were lactose fermentative isolates, which were submitted to conventional tests including IMVIC and motility tests ultimately lactose fermentative, non motile isolates were candidate to Vitek 2 system to confirm the identification. the results revealed that there were 42 (16.8%) of isolates identified as Klebsiellae represented by Klebsiella pnumoniae ssp pneumoniae, 9(3.6%) of isolates diagnosed as Raoultella ornithinolytica, and 1(0.4%) for both K. pnumoniae ssp.ozeanae and Raoultella planticola. Screening tests were performed , disk diffusion test revealed different pattern of resistance, screening of ESBLS by MacConkey agar medium supplemented with 2 mg /l of Ceftazidime showed that 31 (58.5%) of isolates were initially ESBLS producers.Phenotypes confirmatory tests were conducted to different classes of antimicrobial agents, Disk synergism test revealed that 20(37.74%) of isolates were ESBLS positive, while Disk combination test by Ceftazidime + clav and Cefepime + clav revealed that 28(52.83%) and 43(81.13%) were ESBLS producers respectively, disk replacement test pointed that positive isolates were 26(49%), vitek2 system revealed 33(62%) of isolates were ESBLS producers.Imipenem - Ceftazidime antagonism test revealed that there was no isolate produce induced AmpC beta - lactamase, AmpC disc test revealed that no one of isolates were AmpC producer.The result of MHT(Modified Hodge test) revealed that all isolates were not Carbapenemases producers. Molecular study of different antimicrobial resistance genes were performed, the results reveald high percent of occurence as follow : blaTEM genes (90.6%), blaSHV gene(81.13%), blaCTX - M genes (88.6%), sul genes (88.6%), aac(6')Ib - cr genes (84.9%) and qnr - B genes (41.5%).the study also highlighted an association between studied genes. Finally many attempts to study of gene transfer by conjugation were conducted but all of them were failed, except one isolate (No. 5) was succeeded with frequency of conjugation (0.5×10 - 7). This study concluded that there were high prevalence of some plasmid mediated genes of isolates with clear multi gene resistance patterns as compared with some other genes which propose the high selective pressure of these genes and isolates might acquired resistance by mobile elements such as plasmids and integrons.

التنوع الوراثي لبعض الانماط الوراثية للطماطة باستعمال واسمات الـ RAPD وSSR في العراق == Genetic Diversity of Some Tomato Genotypes Using RAPD And SSR Markers In Iraq

Author name: اطياف جميل ثامر التميمي
Supervisor name: علي حمود السعدي | محسن جلاب عباس
General topic: Biology
Specific topic: Plant - Genetics
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: قدر التنوع الوراثي لـ 19 من الانماط الوراثية للطماطة (المحدودة وغير المحدودة النمو) المستزرعة في العراق باستخدام اثنين من واسمات الدنا (DNA Markers) المعتمدة على تفاعلات البلمرة المتسلسلة Polymerase Chain Reaction (PCR) وهما واسمات التفاعل التضاعفي العشوا | Genetic diversity of 19 tomato genotypes (determinate and indeterminate) cultivated in Iraq using two polymerase chain reaction based DNA markers (PCR based DNA markers); Random Amplified Polymorphic DNA (RAPDs) and Simple Sequence Repeats (SSRs).Variation of some growth criteria and morphological traits for each genotype were recorded in the growing season of 2012 - 2013.High variability was observed in plant height, leaf area, number of inflorescence, number of flowers and fruit weight among genotypes To achieve PCR reactions, total genomic DNA was isolated from fresh leaves (2 weeks old). The average yields of DNA were in the range of 100 - 295 ng/?l with a purity ranging between 1.8 - 1.9.RAPDs amplifications were performed for genotypes fingerprinting by testing 27 Operon primers. DNA polymorphisms among genotypes were scored within detectable amplified fragments (their numbers and molecular weight) after agarose gel electrophoresis and staining with ethidium bromide. The 27 primers produced 442 of main bands, out of which 312 were polymorphic bands (70.5%) and 70 were monomorphic (15.8%) across all tested genotypes.Each selected primer produced between 60 bands (OPA - 14) to 290 bands (OPD - 13). DNA amplification products ranged in their size from 250 bp (OPA - 01, OPU - 14, OPX - 15, OPX - 19, OPT - 08 ( to 2755 bp (OPX - 18). The highest number of polymorphic bands (21 bands) was produced by primer OPU - 03, while the lowest number of polymorphic bands (3 band) was produced by both primers OPA - 14 and OPB - 17.The primers varied in their capacity in producing polymorphic amplified profiles among tomato genotypes which individually reflected genotype specific DNA profiles (fingerprints). The most important primers for this purpose were primers that produced more variety specific DNA profiles, such as OPD - 13, OPT - 08, OPW - 04, OPA - 04, OPA - 15, OPB - 18, OPU - 03, OPC - 09.The highest value of discrimination among genotypes in this study was obtained by primer OPU - 03, while the lowest discrimination value was produced by both primers OPA - 14 and OPB - 17. The primer efficiency ranged from 0.13 in (primer OPC - 09) to 0.02 in (primer OPB - 17). The lowest genetic distance was 0.2294 between genotypes Oula and Shady lady, while the highest genetic distance was 0.9459 between genotypes Fotton and Special pack. Cluster analysis (Phylogenetic tree) by un weighted pair - group method of arithmetic means (UPGMA) based dendrogram revealed that they were two main genetic groups (major clusters).The first small major clusters included four (four genotypes) while the second large major cluster included (15 genotypes). A total of 21 alleles were detected among the tested genotypes using five SSRs loci distributed on four chromosomes of tomato. The molecular size of bands obtained from amplification of SSR products ranged from 121 to 247 bp. Alleles ranged from one in (Tom 8 - 9, Tom 41 - 42 and Tom 67 - 68 loci) to twelve in Tom 49 - 50 locus. The values of heterozygosity for each locus ranged between 0.63 for Tom 31 - 32 and 0.89 for Tom 49 - 50 with a mean value of 0.30. The polymorphic information content (PIC) values for the SSR loci ranged from 0.45 in Tom 31 - 32 to 0.58 in Tom 49 - 50 loci with an average of 0.21. Each one of (Tom 8 - 9, Tom 41 - 42 and Tom 67 - 68 loci) produce 0.0 value for both heterozygosity and PIC. The study revealed that, The lowest genetic distance was 0.3244 between varieties Tamara and W arda, while, the highest genetic distance was 0.9177between varieties Helam and Super marimond. The genetic similarity values ranging from 0.0823 to 0.6756 depending upon the genetic distance values that ranging from 0.3244 to 0.9177, indicating the largest diversity with percentage of 32 to 91% among the tested genotypes. The analysis of the results obtained from genetic distances and Neighbor - joining dendrogram (unrooted tree) revealed that, the 19 tested tomato genotypes can be grouped into two major groups : first cluster included nine varieties distributed in two subgroups. The second major cluster included 10 genotypes which in turn divided into two subgroups.The relationship among genotypes was not concern to their morphological characters and geographical origins. The overall analysis of the results show that both SSRs and RAPDs markers are powerful tools in fingerprinting and revealing the genetic relationships among tomato genotypes.

تقيم بعض العناصر النادره ومستوى المالونداي الدهايد والبروتين في الرجال العقيمين == Assessment of Some Trace Elements, (MDA) And Protein Levels In Infertile Men

Author name: زهراء فلاح عبد العالي عنوز
Supervisor name: علاء الدين صبحي محسن السلامي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: تم اجراء هذا البحث لدراسه عينات السائل المنوي التي تم الحصول عليها من المرضى المصابين بوهن النطف وعددهم 35عينه كذلك سوي النطف عددهم 40 عينه وتم اخذ مجموعه من الاشخاص الاسوياء (مجموعه السيطره) حيث كان عددهم 20 عينه الذين راجعو مركز الخصوبه في مدينه الصدر ا | This study was performed on human semen specimens obtained from Asthenozoospermic patients (35 specimens) Normozoospermic males (40 specimens), and (20 specimens) Fertile Control group, who were attending to the laboratories of Fertility center in ALSader Hospital of AL - Najaf AL - Ashraf city during the period extended from 1 - 9 - 2013 to 30 - 1 - 2014. The aim of This present study was to estimate the levels of some Trace element (Lead, Copper, Cobalt, Chromium, , and Cademium) concentrations in Asthenozoospermia and Normozoospermia. by atomic absorption method, and comparsion with control (Fertile).Moreover, it tends to estimate the concentration of (MDA) Malondialdehyde , Total protein concentration and to know the viability sperm percent in semen specimens.Also, the relationships between mentioned components and some semen parameters. The results revealed significant increase (P <0.05) in the concentration of examined trace elements in Asthenozoospermia and Normozoospermia when comparsion with control, also a significant increase (P <0.05) in total protein concentration, also in MDA. While The results revealed significant decrease (P <0.05) in the viability sperm percent in semen specimens. Correlation study showed positive relationship between concentration of the trace elements and abnormal sperm morphology percent, also with total protein concentration, and MDA concentration. While negative relationship between concentration of trace elements and percent of sperm motility.It was concluded that the increase in the concentration of the trace elements and it influence on blance and parameter of seminal fluid, also the Correlation between trace element and Protein in semen. All of this lead to arise of cases of Asthenozoospermia and Normozoospermia infertile patients.

تاثير المستخلص الكحولي للبروبولس على بعض الفعاليات الحيوية في الارانب المصابة بالداء السكري == Effect of Ethanolic Extract of Propolis On Some Biological Activities In Diabetic Rabbits (Oryctolagus Cuniculus)

Author name: دعاء عبد الزهرة دلي الفتلاوي
Supervisor name: عبد الهادي عباس الابراهيمي | سهاد حميد حسن
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: العكبر (صمغ النحل) Propolis هو نتاج نحل العسل الذي اكتسب شعبية في الطب البديل وذلك بسبب خصائصه الحيوية، وقد استخدم بشكل واسع في الاطعمة الصحية. ان الدراسات المتعلقة بتاثير العكبر العراقي قليلة. ولهذا السبب, فان الهدف من هذا البحث هو تحليل تاثير العكبر الع | Propolis is a honeybee product that has gained popularity in alternative medicine, due to its biological properties and it has been intensively used in health foods. Studies concerning the effect of Iraqi propolis are rare. Therefore, the goal of this work is to analyse the effect of Iraqi propolis on some hematological and biochemical parameters in alloxan - induced diabetic rabbits, as well as study the histological observations of the pancreas, liver and kidney. Female local rabbits (Oryctolagus cuniculus) were used for this study. The overall number of animals used was 30.They were randomly divided into five groups. Diabetes was induced in all rabbits, except normal control, by a single dose of alloxan (150 mg/kg, i.v.). Development of induced diabetes mellitus was confirmed on first week after alloxan administration by examining the fasting glucose level in the blood taken from marginal ear vein. Rabbits with glycaemia were treated with alcoholic extract of propolis for 23 days. Diabetic control group did not treat with propolis. The treated animals were subdivided into three groups according to the dose of propolis extract. Three oral concentrations of propolis extract were investigated (50, 100 and 200 mg/kg/day).The following parameters have been studied were changes in weights of body, liver and kidneys ; changes in the hematological values that include erythrocytes, hemoglobin, leukocytes and hematocrit also changes in the biochemical values which included glucose, total protein, triglycerides, total cholesterol, aspartate transaminase (AST), alanine transaminase (ALT), blood urea, creatinine and Malondialdehyde (MDA), in addition histopathological study of pancreas, liver, and kidneys. The results indicate a significant decrease (P < 0.05) in the body weight of alloxan - induced diabetic rabbits in comparison with control group, while there were significant increases in the weights of liver and kidneys. The present study showed that alloxan induced significant decreases (P<0.05) in all primary blood indices; erythrocytes, hemoglobin, packed cell volume (hematocrit) and leukocytes. Also, serum biochemical changes showed significant increases (P<0.05) in glucose, total protein, triglycerides, total cholesterol, AST, ALT, blood urea, creatinine, and MDA comparison with control group.Histopathological changes in pancreas, liver and kidneys, observed microscopically, revealed degrees of damage in the tissues, while these organs of control groups exhibited a normal architecture. The treatment with alloxan resulted in several forms of histological alterations such as cytoplasmic vacuolation, degeneration, necrosis, cell hypertrophy, nuclear diploid, diffusion of inflammatory cells, dilatation in ducts, stagnation in secretory fluid. in addition, hemorrhage, dilatation and congestion in blood vessels and disorganization of histologic architecture, Generally, the gradual improvement in blood values was noticed with the increase in concentration alcoholic extract of propolis and return back the normal histological shape of pancreas, liver and kidneys. Propolis extract in rabbits had a potent antihyperglycemic effect, antioxidant activities, radical - scavenging capacities, tissue regeneration properties, and that may be due to the high biological activity and nutritive values contents in bee propolis. In conclusion, the results suggest that propolis could potentially contribute for the prevention and treatment of diabetes mellitus.

تقييم مستوى هرموني الجوع والسمنة لدى مرضى فرط ضغط الدم في محافظة النجف الاشرف == Assessment of Obestatin And Ghrelin Levels In Hypertensive Patients In Al - Najaf Al - Ashraf Governorate

Author name: زهراء محمد فاخر عطية النفاخ
Supervisor name: ارشد نوري غني الدجيلي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: تهدف هذه الدراسة الى تقييم مستوى الهرمونات المكتشفة حديثا هرمون الجوع ?هرمون السمنةونسبة هرمون الجوع الى هرمون السمنة في مرضى ضغط الدم لمعرفة العلاقة المحتملة بين مستوى هرمون جريلين, اوبستاتين مع عوامل مختلفة بما في ذلك الضغط الانقباضي, الضغط الانبساطي و| The present study aims to assess the newly discovered ghrelin, obestatin hormones levels and ghrelin to obestatin ratio in patients with hypertension disease and to find out a possible relationship between obestatin, ghrelin level with different criteria including, systolic blood pressure, diastolic blood pressure and body mass index (BMI) in patients with Hypertension disease and compared with healthy controls as a tool for monitoring and even possibly prediction or diagnosis of these diseases. 69patients are diagnosed with hypertension disease (33males and 36 females) and 20 control healthy subjects (10 males and 10 females) having no history of diabetes mellitus, renal failure and other disease enrolled in this study.The patients are selected from both sexes (males and females) their ages ranged between (40 - 70) years old. Patients with hypertension disease are recruited from AL - sader teaching city in AL - Najaf AL - Ashraf Governorate during the period from September to December 2013. Results of the present study in general revealed that there is high obestatin level in patients with hypertension diseases in a comparison with control group, low ghrelin level in patients with hypertension disease comparing with control group and ratio of ghrelin to obestatin ratio was decreased in patients undergo from hypertension when compared with control group.The result showed a positive correlation among obestatin, systolic pressure, diastolic pressure and body mass index (BMI) with negative correlation between gherlin, systolic pressure, diastolic pressure, and body mass index (BMI) and negative correlation between ghrelin to obestatin ratio with blood pressure. The present study concluded that ghrelin to obestatin ratio might play role in blood pressure regulation

دراسة بعض الجينات المشفرة لعوامل الضراوة لبكتريا Acinetobacter baumannii المعرزلة من العينات السريرية == Study of Some Virulence Factors Encoded Genes of Acinetobacter Baumannii Isolated From Clinical Samples

Author name: عصام محمد طاهر الخويلدي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة على300عينة سريريه مختلفة حصل عليها من الجروح والادرار والقشع والدم خلال الفترة من ايلول 2013 الى شباط 2014.منها 102(34%) لا يوجد نمو بينما 198(66%) نمت على وسط زرعي متخصص. شخصت عشرة عزلات من Acinetobacter baumannii من مائة وثمانية وتسعون من | Out of 300 various clinical samples obtained from wounds, urine, sputum, blood through the period from September, 2013 to February, 2014 of which 102 samples(34%) yielded no growth while 198 samples (66%) were positive growth on selective media. Ten isolates of Acinetobacter baumannii were identified among one hundred ninety eight of Gram - negative bacteria grown on MacConkey agar that was isolated from different clinical specimens in Al - Najaf Al - Ashraf province hospitals. A.baumannii identification depends on morphological, microscopic examination and biochemical tests as the initial identification. Also it was identified by both blood agar containing D - glucose and growth at 44?C. The final identification was performed by Api20E to confirm from all A.baumannii isolates..Distribution of A.baumannii among various clinical specimens where 4 isolates (40%) of wounds specimens and 3(30%) of urine specimens, followed by 2 isolates(20%) and one isolate(10%) of sputum and blood specimens respectively.The virulence factors of A.baumannii were studied, including bioflim formation, adhesion, capsule, hemolysin and protease, beta _lactamases production. The results indicate that 60% of A.baumannii formed the biofilm, 90% of isolates have ability to adhesion to epithelial cell and 70% of isolates was the capsule production, 80% of A.baumannii isolates able to produces beta _lactamases while all A.baumannii isolates cannot produce of both hemolysin and protease.The results showed variation in the resistance of these bacteria to antibiotics where all A.baumannii isolates 100% resistance to each of cefotaxime, Ceftazidime, ceftriaxon, piperacillin while 90% resistance toticarcillin - clavulanic acid, 50% resistance to tobramycin and 30% to ciprofloxacin. 20% of all isolates showed resistance to each of amikacin, Doxicycline, imipenem, meropenem.By using Combing Disc Test(CDT) method to detect Extended Spectrum ? - lactamases(ESBLs) and metallo ? - lactamases (MBLs) production.Where 90% of A.baumannii showed ability to produce of ESBLs while only 20% showed ability to MBLs production.The genotypic method was used to detect csuE, ompA genes and also some of ? - lactamases genes such as blaTEM, blaSHV, blaNDM - 1 by using Polymerase Chain Reaction technique.The results showed that 60% of all A.baumannii isolates produce phenotypic biofilm and 30% carry csuE gene of all isolates while 50% when compared with isolates that show phenotypic formation of biofilm and the distribution of gene among all clinical specimens where 50 %, 33.3% and 25% in sputum, urine and wounds specimens respectively while not present in blood specimens. The results showed that 40% of all A.baumannii isolates carry ompA gene while 44.4% when compared with isolates that show phenotypic adhesion and the distribution of gene among all clinical specimens where 100%, 50 %, 33.3% and 25% in blood sputum, urine and wounds specimens respectively.The outcomes showed 70 % of A.baumannii isolates carry blaTEM gene and 40% of A.baumannii isolates carry blaSHV gene while none carry of blaNDM - 1gene. When compared with phenotypic results of ESBLs, MBLs.The results of blaTEM, blaSHV genes become 77.7% and 44.4% respectively.

تاثير مستخلص بذورالحبة السوداء في امراضية طفيلي المتورقة العملاقة Fasciola gigantica خارج وداخل الجسم الحي == Efficiency of Nigella Sativa Seed Extract In Fasciola Gigantica Parasite In Vivo And In Vitro

Author name: شيماء عبد الحسين محمد شلاش
Supervisor name: جاسم حميد رحمة الخزاعي
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة الحالية خلال المدة من شهر تشرين الثاني 2012 ولغاية تشرين الاول 2013لتقييم فعالية المستخلص الكحولي لبذورالحبة السوداء Nigella sativaفي حيوية بيض وبالغات دودة الكبد العملاقة Fasciola gigantica خارج وداخل الجسم الحي. وبواقع ثلاث تراكيـز 20%, 4 | The present study was conducted during the period from November 2012 till October 2013 to evaluate the effectiveness of the alcoholic extract for Nigella sativa seeds on the vitality of eggs and adults liver giant worm Fasciola gigantica In vitro and In vivo in the infected domestic rabbits lepus lepus arabica. Alcoholic extract for Nigella sativa seeds used In vitro at three concentrations 20%, 40%, 60% for each eggs and adults of Fasciola gigantica and In vivo were three doses 200, 400, 600 mg/kg from body weight in the infected rabbits by this parasite. The result of the current study In vitro revealed that the alcoholic extract for Nigella sativa seeds at 60% has been great effects in reducing the percentage of the eggs hatching to 0% and increasing the mortality percentage of the adult worms to 100% when compared with the control groups. So the results of this study showed that there is not significant differences of alcoholic extract of Nigella sativa seeds on the blood components of the healthy rabbits at level P<0.05 while in the infected and treated rabbits there are less significant effect when compared with the infected rabbits. In the infected rabbits showed significant increased in numbers of white blood cells from 5.52*109/L in the negative control to 10.41*109/L in the positive control and significant decreased in numbers of red blood cell from 5.51*1012/L to 4.41*1012/L and haematocrit value from 32.21% to (24.71%) and the amount of hemoglobin from 11.43*gm/dl to 8.53* gm/dl.While the ethanol extract of Nigella sativa seeds reduced the number of WBCs and increased the number of RBCs, PCV and the concentration of hemoglobin. Also the results of the current study In vivo showed that the ability of alcoholic extract of Nigella sativa seeds at dose 600 mg/kg are more effective in reducing the numbers of Fasciola gigantica worms in the infected and treated rabbits when compared with the infected and untreated rabbits. So the total rate number of worms in the positive control 16.7 while 6.4, 2, 0 for doses 200, 400, 600 mg/kg from body weight respectively. Results of histological study in the experimental infected rabbits revealed that the alcoholic extract is very effective for reducing the histopathological changes in the liver, spleen and kidney which caused by the parasite. And the therapeutic efficiency of these extract in dose 600 mg/kg for organs Liver, Spleen, Kidney are 100%. Concluded from the results of this study that the alcoholic extract of Nigella sativa seeds used in treatment the infection of the F.gigantica worm because its therapeutic efficiency and not any side effects to this extract.

تاثير الانزيمين الكلوكواميليز والكلوكوز اوكسيديز في تثبيط بكتريا Streptococcus mutans المسببة لتسوس الاسنان == The Effect of Glucoamylase And Glucose Oxidase On Inhibition of Streptococcus Mutans Causes The Dental Caries

Author name: بيداء عبود حسن الجنابي
Supervisor name: زهرة محسن علي | محمد عبد الله جبر
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: تضمنت الدراسة استخلاص الكلوكواميليز والكلوكوز اوكسيديز من الفطرين Aspergillus niger وPenicillum notatum على التوالي وتنقية وتوصيف الانزيمين لغرض زيادة تركيز بيروكسيد الهيدروجين المحفز لانزيم اللاكتوبيروكسيد الموجود باللعاب على تكوين ايونات الهايبوثايوسيان | This study aims at producing glucoamylase and glucose oxidase from the Aspergillus niger and Penicillium notatum respectively , purifying and characterizing the enzymes to increase H2O2 concentration which induce lactoperoxidase in saliva to the formation of hypothiocyanite ion to inhibite Streptococcus mutans which causes the dental caries. For glucoamylase and glucose oxidase production, the results shown the the highest enzymes production were occurred using the synthetic medium, it gave high titer of glucoamylase and glucose oxidase activity (0.212, 0.605 U/ml) respectively, the optimum incubation period for glucoamylase was occurred after 96 h (0.125 U/ml), while the maximum activity of glucose oxidase was occurred after 72 h (0.662 U/ml), the optimum temperature for enzymes production was occurred in 30°C, (0.257, 0.690 U/ml) respectively, the maximum production of glucoamylase and glucose oxidase were occurred in the pH = 6 (0.174, 0.391 U/ml) respectively, the optimum nitrogen source for enzymes production was yeast extract and potassium nitrate (0.157, 0.571 U/ml) respectively, the optimum carbon source for glucoamylase and glucose oxidase production was starch and glucose (0.167, 0.459 U/ml) respectively. For glucoamylase and glucose oxidase purification, the results found the ammonium sulfate (80 %) was selected as the best ratio for precipitate of glucoamylase , the specific activity reached to (3.626 U/mg) , with a purification fold (1.241) and yield (0.38) % , while the (60 %) was selected as the best ratio for precipitate of glucose oxidase, the specific activity reached to (10.304 U/mg) , with a purification fold (1.219) and yield (0.34) % , two peaks of glucoamylase were appeared in the gel filtration the specific activity of the first form (4.195 U/mg) with purification fold (1.436), while the second (31.214 U/mg) with purification fold (10.689), while one peak of glucose oxidase was appeared in the gel filtration, the specific activity was reached (62.382 U/mg) with purification fold (7.385). For characterization of enzymes, the results reported the highest activity of glucoamylase (Aand B) occurred in pH = 8, 6.5 (0.253U/ml, 0.511 U/ml) respectively , while the maximum activity of glucose oxidase (1.289 U/ml) in pH = 5.5, the optimum temperature of glucoamylase (Aand B) activity (0.243U/ml, 0.703 U/ml) in 40, 30 °C respectively , while the optimum temperature of glucose oxidase activity (1.424 U/ml) in 45 °C, the optimum pH for glucoamylase (B) stability ranging between (5.5 - 6.5), while the optimum pH for glucose oxidase stability ranging between (5 - 6) , the optimum temperature for glucoamylase (B) stability ranging between (10 - 35) °C for 30 min, while the optimum temperature for glucose oxidase stability ranging between (25 - 35) °C for 15min, the molecular weights of glucoamylase (Aand B) approximately 52 & 66 kDa respectively using the electrophoresis technique, while approximately 68 kDa for glucoamylase (B) using the gel filtration technique, the molecular weight of glucose oxidase approximately 78 and 87 kDa electrophoresis electrophoresis and gel filtration respectively, the values of Km and Vmax of glucoamylase and glucose oxidase were (2.4 mM , 9.6 mM/min and 19.6 mM, 7.5 mM/min) respectively. The result of this study showed the Streptococcus mutans growth was killed in the using the first and the second concentration of glucoamylase and glucose oxidase (0.09, 0.009 and 0.3, 0.03 µl) respectively , while the growth was appered in third concentration of enzymes (0.0009, 0.003 µl) respectively. The NaF, ZnF2 , C 12H 7 Cl 3 FNaO2 , NaCl , NaHCO3 and KSCN with (0.5 and 1M ) leads to increase the enzymes activity , while Na3PO4 , SrCl2 , Fe2O3 and Ca(HCO3) 2 caused decreased the activity of enzymes when treated with (0.5 and1 M) from these solutions, the glucoamylase activity also decreased when it treated with (0.5 and 1M) from KNO3 solution but this solution increased the activity of glucose oxidase when it treated with (0.5 and 1 M) from this solution

دراسة بيئية للطحالب الهائمة والملتصقة على النباتات المائية في نهر العباسية/ وسط العراق == An Ecological Study of Phytoplankton And Epiphytic Algae On Aquatic Macrophyta In Al - Abbasiya River/Middle of Iraq

Author name: شيماء جبار هادي الجحيشي
Supervisor name: احمد عبيس مطر | جاسم محمد سلمان
General topic: Biology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة الحالية شهريا في اربعة مواقع على نهر العباسية وسط العراق للمدة من اذار 2012 الى شباط 2013، شملت الدراسة قياس بعض الصفات الفيزياوية والكيميائية لمياه النهر ودراسة الصفات النوعية والكمية لمجتمع الطحالب الهائمة (Phytoplankton) والطحالب الملتصقة | The present study was conducted monthly at four sites that located at Al - Abbasiya River middle of Iraq, for the period from March, 2012 to February, 2013 including studying some physiochemical properties of water and quantitative and qualitative of phytoplankton and epiphytic algae on aquatic macrophyta by selecting five species of aquatic plants : Phragmites australis Cav., Typha domengensis per., Ceratophyllum demersum L., Potomogeton pectinatus L. and Myrophyllum verticillatum L. Results also showed that, the air temperature ranged between 10.0 to 45.3 C?, while, the water temperature was 6.3 to 33.0 C?. Transparency values ranged between 0.29 to 3.06 m, while, the current velocity was 60 - 730 cm/ sec. The study also revealed that the pH was limited at the period of study ranged 6.97 to 9.13. Electrical conductivity and salinity were about 163.33 to 1157 ?s. cm and 3.68 to 23.0 0 ‰, respectively. Total dissolved solids values were about 277 mg/L to 900g/L. Total suspended solids values ranged between 0.09 - 37.0 mg/l. Results showed that, slightly alkaline at and bicarbonate ions prevailed, total alkalinity was 42 to 810 mg /L. Dissolved Oxygen values were 1.83 to 12.33 mg/L and biochemical oxygen demand was 1.4 to 8.0 mg/L, water hardness value in the studied sites ranged between 60 to 2000 mg CaCO3/L., While, calcium concentrations was 86.84 to 1783.0 mg CaCO3/L. and Magnesium concentrations was 6.70 to 268.66 mg CaCO3/L. Reactive phosphate concentrations in this study produced values ` ranged from 0.01 to 5.06 mg /L, and Nitrite concentrations ranged between nill to 5.20 mg /L, Nitrate concentration ranged between 0.09 to 6.47 mg /L. 199 species were recorded as total species number of phytoplankton at the period of study that, belong to Diatoms algae consisting of 61.30% : 88 species which belong to Pennales and 34 species for centrales, followed by Chlorophyta and Cyanophyta that were 42 and 21 species, respectively. Pyrrophyta 1, Euglenophyta 2, Rhodophyta 2, Pheophyta 5, Chrysophyta 5 species. Bacillariophyta gave the highest total number was 9303 × 104 to 1074 × 104 cell / L of fresh weight that was recorded at site 1 during April , 2012 and May, 2012, while, others algae 9823× 104cell/L in site 3 in July, 2012 compared to 1036 × 104cell/l at site 4 in April, 2012 for the total phytoplankton population density. Site 1 was the most divers sites with numerous number of species of algae, reaching the number of 66 genera and 85 species. while, the least number of species at site 3 were 65 genera and 70 species. April and October, 2012 have the most total cell numbers available for diatoms and non - diatoms algae. Nitzschia palea ; N.commnis and N. kutzingiana were the highest abundance of species showed an average of 46.80% of the overall phytoplankton sampled. Nitzschia was followed by Ankistrdesmus falcatus (25.53%) and Anabaena cylindrica (17.02%).There were some species present in all sites during the period from March, 2012 to February, 2013 i.e. Anabaena cylindrical, Dimorphococcus lanatus, Draparnaldia judayi, Euastrum dubium, Pilayella littoralis, Chrysoamoeba radiansklebs, Melosira distance, Stephanopyxis turris, Amphora ovalis, Cocconeis placentula, Gomphonema augur, G.tenuirostrum, Semiorbis sp and Pinularia biceps. Epiphytic algae types were diagnosed during the study of 256 species within 8 division. Bacillariophyta division was the dominate reaching 172 species composed to 67.18% of the total number, most of them belong to Pennales with 140 species that was more than Centrales 32 species, Chlorophyta 47 species form 18.35%, Cyanophyta 22 species form 8.59% and Chrysophyta and Pheophyta 5 species for both formed 1.95% , Euglenophyta and Rhodophyta 2 species for both formed 0.78% and Pyrrophyta algae that represented by one species and one genus. The highest genera number during the study period were Cymatopleura, Eunotia, Nitizschia, Cymbella and Gomphonema. Numbers of epiphytic algae varied in months and sites due to the host plants. The highest total number was 31039 ×104 cell/ L of fresh weight was recorded at site 1 during April, 2012 on leaves of Ceratophyllum demersum plant, while, the lowest total number was103×104cell/L of fresh weight which was recorded at site. 2 during June, 2012 on shoot of Potomogeton pectinatus. Many species of epiphytic algae were different among the study sites; the highest number was 148 species in Ceratophyllum demersum recorded 93 species on the shoot and 110 species on the leaves, while, the lowest number was 148 species on P. pectinatus recorded 36 on the root 36 and 52 species on the shoot and 60 species on the leaves. The result of study confirm that some of epiphytic algae were found at the most plant parts and different hosts, such as Anabaena cylindrical A. diolum, Lyngba aestuarii, Microcystis aeruginosa, Cosmacladium tubetculatum, Scenedesmus quadricauda, Palmodictyon, Mougeeotia, Pithophora oedogonia. Results showed that, some species favor some parts of host plant e.g Anabaena cylindrica was the most dominated on the Myrophyllum verticillatum and P.australis.Schizothrix tinctoria was dominated on the shoot of Phragmites australis while, algae Nostic linkia dominated on the shoot of Typha domengensis. Algae Ankistrodesmum falcatus, Pyramimonas tetrarhnchus ; Tetraspora cylindrical were dominated on the shoot of Potomogeton pectinatus. There were only seven diatom taxa common encountered on all plant part e.g. Cyclotella bodanicavar var. michiganensis on the shoot of Myrophyllum verticillatum. Fragilaraia capucina var. mesolepta, Cocconeis placentula and Achanthes affinis were dominated on the shoot of Phragmites australis, it was also found that, Navicula miniscula present on leaves of Potomogeton pectinatus and Ceratophyllum verticillatum. Algae N. notha and N. odioas were found on Myrophyllum verticillatum leaves. Ten species were recorded for the first time at this study in Iraq from phytoplankton and epiphytic algae from the period of March, 2012 to February, 2013 : one species of Cyanophyta epiphytic algae Anacystis nidulans ;one species of chlorophyta epiphytic Trentepohlia aurea ; four species of phytoplankton Bacillariophyta centrales : Melosira jurgensi; M. undulata ; Stephanopyxis turris ; Thalassiosira anguste - lineata ; T.decipiens and four species of epiphytic Baciliariophyta pennales : Achanthes flexella; Amphora bullatoides ; Asterionella formosa ; Navicula notha.Five diversity indices : relative abundance, Species richness; Shanon - Weiner diversity ; Jaccard similarity index and Sorinson similarity index were calculated in this study. Relative abundance index for phytoplankton was 44.5 at site 3 in April, 2012 while, epiphytic algae recorded the highest value was 91.6 on the shoot of C.demersum at site 1 in February, 2013 ; on the roots and leaves of T.domengensis in sites 2 and 3 were 66.6 in March, 2012 and 36.36 in June, 2012 on the leaves the same of plant. The highest value of species richness of phytoplankton was 21.9 at site 3 in April , 2012while, for epiphytic algae was 18.3 on the leaves of M.verticillatum and 9.0 on shoot of P.pectinatus at site 4 in March, 2012; on the leaves of C.desmersmum was 12.3 at site 2 ; on the shoot of M.verticillatum plant was the highest value at site 1 on May and June, 2012, while, on leaves and shoot of P. australis plants was the highest value in May and July, 2012 at site 2 and on root of P. australis and shoot of P. pectinatus at site 4 on August, 2012and February, 2013 at site 3, respectively. Results cleared a similarity with high value of Jaccard and Sorenson indices ranged between 3.2 to 50.0 and 55.87 to 153.21 respectively, while, the value of Shanon - wiener diversity index was ranged between 0 - 18.3 as high value which were 4.6 of M. verticillatum plant leaves at site 1 for May and June, 2012 and at low value during the period of study at sites 2, 3 and 4 for most plant parts. A statistical analysis was done using the canonical correspondence analysis(CCA).

تقييم بعض الدلائل الحيوية وصورة الدهون وعلاقتها مع مرضى السكري من النوع الثاني == Assessment of Some Biomarkers And Lipid Profile In Relation With Diabetic Patients Type 2

Author name: عذراء باقر حسن الشيباوي
Supervisor name: ارشد نوري غني الدجيلي
General topic: Biology
Specific topic: Zoology - Physiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: لازال البحث مستمرعن ايجاد متغيرات جديدة قد تساعد في تشخيص ومتابعة مرض السكر وهو من المجالات المهمة في ميادين البحث العلمي حيث ركزت بعض الدراسات على حالة الانسولين بينمراكزت بحوث اخرى على صورة الدهون والشدة التاكسدية كاسباب للسكري. اجريت هذه الدراسة لمرض | The search of a new parameters for monitoring and even prediction of diabetes mellitus (DM) are still an important issue in many research fields. Some studies focused on the role of insulin status, while others concentrated on lipid disturbances or even oxidative stress disorders in the diabetes. This study was conducted on randomly selected 68 type 2 diabetic patients (27 Males and 41 Females) attending the diabetes mellitus center in Al - Sadder Teaching Hospital in Al - Najaf province, Iraq and a group of 20 apparently healthy subjects (10 Males and 10 Females) were included as a control group. The study was carried out from February 2013 to July 2013. The age of patients and control groups were range of 35 - 65years. The concentration of fasting blood glucose, cholesterol, triglyceride, LDL, VLDL, HDL, Apelin, Omentin, Vaspin, Visfatin and BMI were estimated in patients and control groups. The results show significant increase (P?0.05) in fasting blood glucose, cholesterol, triglyceride, LDL, VLDL, Apelin, Vaspin and Visfatin levels in patients compared with control groups, also the results show significant decrease (P?0.05) in HDL and Omentin level in patients compared with control groups. The results revealed that all biomarkers (Apelin, Omentin, Vaspin and Visfatin) not significant difference (P>0.05) in patients at different ages. The results also revealed that biomarkers (Apelin, Vaspin and Visfatin) levels increase significantly (P?0.05) in males than females in both patients and control groups, while the result of omentin level reveal no significant difference (P>0.05) between males and females in both patients and control groups. The results also revealed that significant increase (P?0.05) in BMI in patients compared with control groups. The results also show that biomarkers (Apelin, Vaspin and Visfatin) concentration increase significantly (P?0.05) with increasing BMI in males than females compared with control groups, while the result of omentin concentration show no significant difference (P>0.05) in patients and control groups and show lower significantly increase (P?0.05) in females than males compared with control groups. The results have been shown significant positive correlation (P?0.05) between biomarkers (Apelin, Vaspin and Visfatin) and FBG, cholesterol, triglyceride, LDL and VLDL in patients (males and females), while the results have been shown significant negative correlation (P?0.05) between biomarkers (Apelin, Vaspin and Visfatin) and HDL in patients (males and females). The results also have been shown significant negative correlation (P?0.05) between omentin and FBG, cholesterol, triglycerides, LDL and VLDL in patients (males and females), while the results have been shown significant positive correlation (P?0.05) between omentin and HDL in patients (males and females). The results also have been shown no significant correlation (P>0.05) between Vaspin and FBG in patients (males and females). The present study concluded that Apelin, Omentin, Vaspin and Visfatin levels maybe that could be adopted as markers for detection and diagnosis of diabetic patients type 2.

تقييم قابلية بعض انزيمات السليليز الفطري على تخمير تخمير بقايا النباتات لانتاج الايثانول == Evaluation of Capability of Some Fungal Cellulase In Fermentation of Plant Residues For Ethanol Production

Author name: عذراء حرجان محسن الدحيدحاوي
Supervisor name: فاطمة عبد الحسين التميمي | محسن هاشم رسن
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت الدراسة الحالية الى تقييم قابلية بعض انزيمات السليليز الفطري على تخمير بقايا النباتات على انتاج الايثانول من بعض الفطريات المحلية المعزولة من 50 نموذج من التربة والذي تضمن Aspergillus oryzae , A. niger, A. terreus , A.flavus , A.fumigatus, A.parasiti | The present study was conducted to proceed a Bioethanol production using some of the waste fermentation plant by cellulosic hydrolysis enzyme produced by some local fungi isolated from 50 samples from soil which were including Aspergillus oryzae, A.niger, A.terreus , A.flavus , A.fumigatus, A.parasiticus, A.nidulans, Penicilliuum chrysogenum, Trichoderma longi, Rhizopus stolonifer, Cladosporium spp, Mucor indicus, Trichothecium spp. The prominent isolates were A. oryzae, A.niger, A. terreus which were chosen for further studies and screening to producing cellulase enzymes the fungal isolates revealed variation values of clear zone It’s (5.1, 5, 5, 4.8) cm to A. oryzae, A.niger, A. terreus , A.flavus respectively. The results revealed that the suitable carbon source to the cellulase activity was induced in different raw plant substrate, the highest was produced when using Corn cobs, Rice husk and Reed reached to (1.72, 2, 1.26)IU/ ml respectively when using A. oryzae and (1.24, 1.17, 1.89) IU/ ml when using A.niger, and (1.31, 1.19, 1.93)IU/ ml when using A. terreus. but using the cellulose powder and CMC, Avical sole carbon source total cellulase given least activity compare with raw plant substrate.on the other hand, using Mandels - Weber medium activity of enzyme production by A. oryzae, A.niger, A. terreus recorded (6.51, 4.14, 5.61) U/ ml respectively when using Corn cobs and (5.79, 4.03, 5.24) U/ ml and (5.55, 3.97, 5.19) U/ ml when using Rice husk and Reed by different fungi. The results refers that , the best chemical pretreatment results were appear when using NaOH at 100Co in 30min on Corn cobs, the total cellulase activity were (1.63, 1, 1.21) U / ml when using fungal isolated to degradation after treatment, while using hot water at100Co without NaOH in 15 min to pretreatment Rice husk activity were (2.16, 2.07, 2.12) U / ml but Reed are appear high activity when pretreatment with NaOH at 100C0 in 15min activity It’s (2.28, 1.65, 2.09) U / ml. The results revealed that, The optimized conditions of the enzymes were different in this study that give activities of Fpase, CMCase and ? - glucosidases to fungus A. oryzae compared to the rest of the fungi using Corn cobs as carbon source, it reached to(2.21, 2.30, 46.72) IU / ml respectively when pH6, and temperature tested for these enzymes recorded (1.64, 1.61, 30.86) IU\ ml respectively at a temperature of 30 C° and when using the concentration of substrate gave activity (2.4o, 2.48, 42.34) IU / ml of 6 % from Corn cobs and recorded when using nitrogen source concentration at 6 % (1.92, 1.89) IU\ ml in KNO3 and (NH4)2SO4 to Fpase and CMCase and the effectiveness of ? - glucosidase at the same nitrogen source (43.54, 50) IU / ml. on the other hand, showed enzymes Fpase, CMCase and ? - glucosidase high activities to ? - glucosidase, CMCase to fungus A. oryzae compared to the rest of the fungi using Reed as carbon source reached (2.31, 2.21, 46.15) IU/ml respectively at pH 6, and at different temperatures were (1.66, 30.94) IU/ml to Fpase and ? - glucosidase at 30 C°, but CMCase gave the highest efficacy (1.60) IU \ml at 25 C° and decreased effectiveness to (2.60, 2.57, 49.69) IU / ml at 6 % of the carbon source recorded effectiveness of the enzyme Fpase (1.19, 1.09) IU / ml when using (NH4)2PO4 and (NH4)2SO4 at 6 % as a nitrogen source of from either enzymatically CMCase and ? - glucosidase was effective at same nitrogen source (1.29, 2) and (35.19, 40.41) IU / ml respectively.The results showed when you use a Rice husk recorded higher effective enzymatic Fpase and CMCase and ? - glucosidases of fungus A. oryzae was (2.32, 39.27) IU /ml for Fpase and ? - glucosidases at pH 6 but CMCase gave the highest efficacy at 5 pH as recorded (2.04) IU / ml at temperatures 30 C°, reached to (1.64, 1.58, 29.13) IU / ml respectively for Fpase and CMCase and ? - glucosidases at a temperature of 30 C°, and when using 6% of the substrate was effective (2.47, 2.19, 44.86) IU / ml, activity recorded when using (NH4)2PO4 and (NH4)2SO4 at 6 % as a nitrogen source of (1.1) IU / ml to FPase on either enzymatically CMCase and ? - glucosidase was effective when use same a nitrogen source (1.18, 1.83) and (31.92, 36.91) IU/ml, respectively. In addition, The results refers when precipitation by ammonium sulfate specific activity were (38.69, 1.25, 5767.5) IU of the enzyme with 0.012 mg protein and then, Elution protein of crude enzyme solution of A.oryzae from DEAE - cellulose column was shown to the protein was separated in (33) fractions.It was found that only the fractions (F - 8) contained cellulase activity, while fraction (F - 30) eluted in column containing buffer and different concentrations of NaCl then using gel filtration and gave three peak of enzymes alone and Characterize enzymes purified FPase activity was found at 5.5 pH which (0.91) U and temperature was having activity at 25 and 30 C°, were (0.14, 0.15) U and CMCase found that the enzyme exhibited maximum activity at 25 C° was (0.33) U but 30 C° for ? - glucosidase was (38.22) U and the molecular weight of the protein was found to be about (38, 52 and 49) kD for (FPase, CMCase, ? - glucosidase) respectively. Finally, estimated ethanol density (0.80 - 0.91) g /ml and ethanol concentration (60 - 97) % but using chromic acid test of purified ethanol the complex enzyme with Reed, complex enzyme with Corn cobs recoded high value of ethanol which were (0.98, 1.72, 1.87, 1.89 ) % and (1.09, 1.83, 1.92, 1.99) % respectively but complex enzyme with Rice husk were given (1.01, 1.12, 1.48, 1.79) % in 4, 5, 6, and 7 days respectively on the other hand, when using the A.oryzae and A.terreus with Reed gave high ethanol value from other fungi with substrate in this study, and observed Rice husk in all results was recorded less absorbance at 350 nm and determination of ethanol concentration by gas chromatography mass used ethanol concentration 99 % as standard, also we showed the ethanol when using enzyme pure with substrate in which were (93.7, 97.1, 88) % ethanol to enzyme with Corn cobs and Reed and Rice husk respectively

دراسة مناعية ووراثية تتبعية لمرضى العقم من الرجال == A Prospective Immunological And Genetic Study of Infertile Men

Author name: علي عبد الزهرة مهدي الفحام
Supervisor name: يحيى كاظم السلطاني | عبد الزهرة كاظم محمد علي
General topic: Biology
Specific topic: Zoology - Physiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: ان من الحقائق العلمية الثابتة اليوم ان الفحص الروتيني للسائل المنوي يعد عاملا تنبؤيا اجماليا للقدرة الاخصابية للرجال، ولذلك فان حاجة متزايدة بدات تبرز لاكتشاف فحوصات وظيفية جديدة في عملية تقييم العقم عند الرجال. ان الهدف الاساس من هذه الدراسة هو تعزيز الج | It is a scientific fact today that routine seminal fluid analysis is a key predictor of male reproductive potentiality ; so that there is an increasing need for finding out other functional tests in the assessment of male infertility. The main goal of the current study is to consolidate the scientific and practical efforts concerned with male infertility assessment especially from immunological and genetic aspects. The study was carried out between January 2013 and December 2013 including one hundred (100) selected infertile men who attended the Fertility Center in al - Sadr Medical City in Al - Najaf Al - Ashraf Governorate, the study also included twenty (20) healthy volunteer fertile men as a control. Serum and seminal antisperm antibodies (ASA) were determined by ELISA (Enzyme Linked ImmunoSorbent Assay) technique ; sperm chromatin condensation was evaluated by aniline blue staining (AB) ; sperm DNA fragmentation (damage) was evaluated by toluidine blue staining (TB). The results showed that the incidence and concentration of serum and seminal plasma ASA in the infertile men were significantly (p<0.05) higher than that in control fertile men. The incidence and concentration of serum and seminal ASA were also significantly (p<0.05) higher in normozoospermic infertile patients than that in control fertile men. There was a high significant negative correlation (p<0.01) between the concentration of serum and seminal plasma ASA in the infertile men and sperm motility and progressive motility, the concentration of serum and seminal ASA also showed a high significant positive correlation (p<0.01) with sperm agglutination, and a significant positive correlation (p<0.05) with seminal WBC count. The results also revealed that there were no significant effects (p>0.05) for patients' age, infertility duration, ABO blood groups and smoking habits on the levels of ASA in the serum and seminal fluid, while higher significant increase (p<0.01) in serum and seminal ASA concentrations was observed in infertile patients with varicocele as compared with those without. The results have also revealed that the percentage of sperm with chromatin decondensation and DNA damage has shown a high significant (p<0.01) increase in infertile patients compared to fertile men. There was also a significant increase (p<0.05) in sperm DNA damage in normozoospermic infertile patients comparing with fertile men, but no significant difference (p>0.05) was found in sperm chromatin condensation between normozoospermic patients and fertile men. Both sperm chromatin decondensation and sperm DNA damage showed a significant positive correlation (p<0.05) with sperm morphology, and a significant negative correlation (p<0.05) with sperm concentration, motility and progressive motility. The present study also revealed that the level of chromatin decondensation has been affected by patients' age, infertility duration, smoking habits and varicocele. It was observed that the higher percentage of chromatin decondensation was recorded in patients older than 37 years, and in patients subgroups with infertility duration more than 15 years, it was also higher in smoker as compared with non - smoker patients and in those with varicocele as compared with those without. Similarly, the level of sperm DNA damage has also been affected by patients' age, smoking habits and varicocele. It was observed that the highest percentage of sperm DNA damage was recorded in patients older than 37 years. The highest level of sperm DNA damage was also seen in smoker patients as compared with non - smokers and in those with varicocele as compared with those without. In contrast, the effect of infertility duration on sperm DNA damage was not statistically different (p>0.05). The correlation and regression results recorded high significant correlations (p<0.01) between serum ASA and seminal plasma ASA, and between sperm chromatin decondensation and sperm DNA damage. However, there was no significant correlation (p>0.05) between the level of serum and seminal ASA and each of sperm chromatin decondensation and sperm DNA damage. The current study concluded that the defects in sperm chromatin status (chromatin decondensation and DNA damage), and the immunological disorders caused by serum and seminal plasma ASA may - at least partially - contribute to the etiology of infertility of the patients under study, even in those with normal seminal parameters. However, it seems that ASA affect fertility in a pathway that is different from that affected by sperm chromatin defect. It was recommended that both sperm chromatin staining techniques and ASA tests could be routinely used as complementary tests to diagnose infertility.

تقييم وعزل فيروس الانفلونزا للانسان ودراسة الاستجابة المناعية في الجرذان التجريبية == Evaluation And Isolation of Human Influenza Virus And Studying Their Immune Response In Experimental Rats

Author name: فاديه مهدي مسلم العبيدي
Supervisor name: عبد المجيد عبد الله السعدي | يونس عبد الرضا الخفاجي
General topic: Biology
Specific topic: Microbiology - Viruses
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: This study has been conducted for the first time in Najaf / Iraq, and the study included the preparation of a local inactivated vaccine (whole and subunit).The number of cases infected with seasonal influenza virus were 647 cases out of one thousand suspected case. They were distributed into eleven groups. Seasonal influenza virus was detected by two diagnostic methods (rapid test device and real time PCR).The present study has reflected that the most diagnosed cases infected with seasonal influenza virus during the period extended from March 26, 2012 up to April 30, 2013 represented by were type A (H3N2) (283) cases. Whereas H1N1 (148) cases, H3N2+H1N1, (56) cases, H1N1 + H3N2 + B were (30) cases and 130 cases were infected with type B.Current study also revealed that age group of 46 - 60 years old infected with seasonal influenza virus were (159) case including (368) male and females were (279) of different infected group..The spread of seasonal influenza virus in Najaf varies from one region to another depending on the population density. Clinical cases were collected randomly during the months of the year. It has been found that the spread of disease has something to do with temperature and humidity as high humidity and low temperature lead to increased spread of the disease because of their relationship at the stage of the spread of epidemic influenza that spread from Dec 26, 2012 and up to April 1, 2013 in addition to expatriates infected..Two techniques were used for isolation of seasonal influenza virus first inoculation of embryonated chicken egg and secondly chicken fibroblast cell culture.It was found that at the embryonated egg lethal dosage (ELD 50 / 0.5 ml) (109.6) whereas tissue culture infective dosage (TCID50 / 0.1 ml) was (109.3) of (H1N1+ H3N2) and type (B) virus..Virus was purified by two ways that are depending on the vaccine type. The gamma irradiation that dosage used for inactivating vaccine of the purified virus which was extracted from allantoic fluid and tissue culture was (5.702) mSv/h for subunit virus vaccine type whereas gamma irradiation dosage for complete (whole) virus vaccine was (8.816) mSv/h. The results proved that immunoglobulins (IgM, IgA and IgG) levels as well as (IL - 17, IL - 10 and INF - 1?) indicated significant differences among vaccinated, infected and control groups.Subunit and whole virus vaccine extracted from chicken fibroblast cell culture are considered the best of derived from virus propagated in embryonated chicken eggs.Subunit virus vaccine is better than the whole virus vaccine derived from virus propagated in embryonated chicken eggs and extracted from chicken fibroblast cell culture.The current study also reflected that locally prepared virus subunit vaccine and purified whole virus killed vaccine capable of inducing humoral and cellular immune response in experimentally vaccinated rats..Histopathological changes appeared clearly on tissue sections (lung, trachea, heart, liver, spleen, kidney) of the infected group as compared with control and the vaccinated groups.

دور الفيروس المضخم للخلايا CMV في مرضى التهاب الكبد الفيروسي ذاتي المناعة في حالات التهاب الكبد المزمن نمط B == The Role of CMV In Autoimmune Hepatitis Among Chronic Cases of Hbv

Author name: هـدى جميل باقر الخلخالي
Supervisor name: محمد عبود محسن | محمد عبد كاظم السعدي
General topic: Biology
Specific topic: Microbiology - Viruses
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت الدراسة الحالية الى تشخيص التهاب الكبد الفايروسي نمط (ب) وتشخيص التهاب الكبد ذاتي المناعة في المرضى المصابين بالتهاب الكبد.ودور الاصابة بالفايروس المضخم للخلايا البشرية CMV في حث التهاب الكبد ذاتي المناعة.من مجموع 360 حالة مشبه بها جمعت من مستشفى ال | This study aimed to investigate the existence of hepatitis B virus and autoimmune hepatitis in hepatitis B patients as well as to detect the role of cytomegalovirus in the induction of AIH disease. A total of 360 suspected cases were collected from Center Health laboratory/Al - Hakeem Hospital, and AL - Sadder medical city in AL - Najaf city, during the period from January (2013) to August (2013). Only 76 were seropositive hepatitis B (55 males and 21 females with age ranging 11 - 72 years).In addition, 15 healthy individuals without any evidence of chronic inflammatory disease were depended on the control group, age ranging 21 - 50 years.Blood samples were collected from patients and healthy controls were tested for HBsAg and Anti - HBc Ab using Enzyme Linked Immunosorbent Assay (ELISA) technique to investigate hepatitis B seropositive and chronic hepatitis B respectively. For investigated AIH disease was performed depending on the Line Immune Assay technique. While for detection CMV were initially identified by serological technique (ELISA, MiniVIDAS) to detect anti - CMV IgM and anti - CMV IgG; then confirmed employment molecular technique using Real Time Polymerase Chain Reaction for the detection the presence of DNA of CMV. Samples were collected from patients and control to estimation immunological level (C3, C4, IL - 10 & TFN - ?) by using ELISA and radial immunodiffusion method.The results showed that 76 HBsAg seropositive in all age groups but the age group 44 - 54 year revealed high significance (p<0.05) than other age groups. While 35 out of 76 seropositive with HBc Ab, the age group 55 - 65 years showed high significance (p<0.05) than other age groups, and males more infection than females. The result also revealed that the AIH disease was 5 out of 76 patients infected with Type 1 AIH. Included 2(40%) have demonstrated the infection HBsAg positive with reactivation CMV While 3(60%) infected with HBsAg only.The results showed that 68 out of the 76 samples were positive for anti - CMV IgG antibodies, and 4(5.26%) samples were positive for anti - CMV IgM. While the MiniVIDAS test results showed 73 out of the 76 samples was positive for anti - CMV IgG antibodies. 2(2.6%) were positive for anti - CMV IgM antibodies. The results of the Real - Time PCR revealed that DNA of CMV were detected in 23 out of 76 patients were found in all age groups with viral loads ranging from (0.24 - 1730000) Copies/ml, and the results of controls group in Real - Time PCR were CMV negative. The results of cytokines (TNF - ?) showed a high significance (P<0.05) elevation in the serum of all patients than control (419.3 ± 27.8) pg/ml, and the results that AIH showed increase in cytokine level was (1218.2±44) pg/ml than other patients. Whereas chronic hepatitis B patients recorded high significance (P<0.05) in level (IL - 10) was (901.5±22.2) pg/ml than other patients and control (373 ±30.3) pg/ml. According to sex no - significance difference between males and females in results of cytokines profile (IL - 10, TNF?). Complement fraction C3 decreased in all patients compared to those healthy control, while the AIH patient recorded high significance (P<0.05) 142.2±8 mg/dI than the other patients. In regard to C4 was revealed normal level in all patients compared with control groups while in the AIH revealed high significance (P<0.05) was 41.7±5.1 mg/dI compared with other patients and no - significance difference (P<0.0) between males and females in level of C3and C4.The overall finding results showed that the activation cytomegalovirus with hepatitis B virus Contribute to the induction of AIH and cause immune suppressor for them by increase and decrease many immune factors.

تقييم مستوى الثرومبوسبوندين لدى مرضى السكري النوع الثاني == Assessment of Thrombospondin Level In Diabetic Patients Type II

Author name: وجدان راجح حمزة الكريطي
Supervisor name: ارشد نوري غني الدجيلي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: The present study is intended to asses serum levels of Thrombospondin - 1, Fasting blood glucose, Glycated Hemoglobin A1c, Lipid profile and BMI in type 2 diabetic patients, also correlation between Thrombospondin - 1 with all criteria above in both males and females.The study was conducted on randomly selected 65 type 2 diabetic patients (34 males and 31 females) attending the diabetes mellitus center in Al - Sadder Teaching City in Al - Najaf province, Iraq and a group of 24 apparently healthy subjects (12 Males and 12 Females) were included as a control group. The Study was carried out from August 2013 to February 2014.The patients' age was ranging of 35 to 64 years old.The results indicated a significant increase (p<0.05) in serum FBG, Cholesterol, TG, VLDL - C, LDL - C, TSP - 1 levels and a significant decrease (p>0.05) in serum HDL - C level in diabetic patients in comparing with healthy groups. The results also revealed that significant increase (p<0.05) in serum HbA1c level and BMI in diabetic patients in comparing with healthy groups.The results also revealed no significant differences (p> 0.05) in serum Cholesterol, Triglyceride, VLDL - C, LDL - C, HDL - C and TSP - 1 levels between males and females in both patients and health groups, while the results of FBG and HbA1c levels increase significantly (p<0.05) in females than males in both patients and health groups.The results show that Cholesterol, Triglyceride, VLDL - C, LDL - C, TSP - 1, FBG and HbA1c levels increase significantly (p<0.05) in both males and females patients groups in comparing with males and females of healthy groups respectively, and a significant decrease (p<0.05) in serum HDL - C in both males and females patients groups in comparing with males and females of healthy groups respectively.The results indicated a significant increase (p<0.05) in serum TSP - 1 level in females than males patients at same BMI (over weight and obese) except normal weight there is no significant differences (p>0.05) and there is no significant differences (p>0.05) between males and female of control groups at same BMI.The results show that TSP - 1 increase significantly (p<0.05) with increasing age of patients in males and females patients and the ages (55 - 64y) are highly significant(p<0.05) than (45 - 54y) and (35 - 44y), But there is no significant differences (p>0.05) in males and females of healthy groups at different ages. while there is a significant increase (p<0.05) in serum TSP - 1 level at same ages in both males and females patients in comparing with males and females of healthy groups respectively. The results also indicated that TSP - 1 increasing significantly (p<0.05) with increasing duration of disease in males and females patients and the (11 - 15y) reveals a highly significantly (P<0.05) than (6 - 10y) and (1 - 5y). The results have been shown significant positive correlation (P<0.05) between TSP - 1 and FBG, TSP - 1 and HbA1c, TSP - 1 and BMI, TSP - 1 and cholesterol, TSP - 1 and TG, TSP - 1 and LDL - C, TSP - 1 and VLDL - C in (males and females), males, females DM patients. The results have been shown significant negative correlation (P<0.05) between TSP - 1 and HDL - C in (males and females), males, females DM patients. The present study concluded that Thrombospondin - 1 and HbA1c levels were markers for detection and diagnosis of diabetic patients type

تحديد الصفات المظهرية والوراثية لانواع بكتريا المكورات المعوية المعزولة من المرضى في محافظة النجف الاشرف == Phenotypic And Genotypic Detection of Enterococcus Sp. Isolated From Patients In Al - Najaf Al - Ashraf Governorate

Author name: زهراء حميد عودة القريشي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: The study aimed to isolate and identify the Enterococcus spp. from different clinical specimens and study the virulence factors of predominant species, as well as detected the virulence factors encoding genes such as efaA (endocarditis - associated antigen), esp (enterococcal surface protein), eep (stimulating of pheromones expression) and enlA (enterolysin A) genes by PCR techniques.There were three hundred clinical specimens collected from patients suffering from different clinical infections during the period from September 2013 to January 2014 in AL - Sadder Medical City and AL - Hakem General Hospital. The identification of the Enterococcus spp. isolates were depended on colonial morphology, microscopic examination and biochemical tests as a primary identification. The final identification was performed with the automated VITEK - 2 compact system using Gram positive - Identification (GP - ID) cards.According to the results obtained by the VITEK tests forty two clinical isolates of Enterococcus were detected, which distributed into : (22) isolates from urine, (8) vaginal swabs, (6) seminal fluid, (4) throat swabs and two isolates from wound swabs with no isolates from cerebral spinal fluid, stool and blood specimens.This study revealed that the E. faecalis is more distributed with 25(59.52%), followed by E. faecium with 10 (23.80%), E.avium with 5 (11.90 %), E. durans and E. raffinosus with 1(2.39%) for each.The study investigated the virulence factors of E. faecalis, E.faecium and E.avium, which play a major role in enterococcus pathogenicity. E. faecalis and E.faecium had the ability to producecapsule, gelatinase, biofilm, adhesion, protease, bacteriocin, haemolysin and cytolysin except ? - lactamase produced only by E. faecalis while E.avium produced all these virulence factors except gelatinase, bacteriocin and cytolysin.The results revealed variation in the resistance of bacteria to antibiotics, E.faecalis express absolute resistance (100%) to Erythromycin, high resistance against Gentamycin, Tetracyclin and Vancomycin but high susceptibility to Ciproflaxacin and Penicillin and moderate susceptibility to Chloramphenicol. E.faecium exhibited absolute resistance (100%) to Erythromycin, Gentamycin and Tetracyclin, high resistance against Chloramphenicol, Penicillin and Vancomycin but high susceptibility to Ciproflaxacin while E.avium exhibited susceptibility (100%) to all these antibiotics except Tetracyclin showed absolute resistance.Then detected the virulence factors encoding genes : efaA, esp, eep and enlA genes by using PCR techniques and Electrophoresis Systems.Finally, The genotypic method. Regard to genotypic study the outcome showed that 21(84%) isolates of E.faecalis, 4(40%) of E.faecium and 5(100%) of E.avium were carrying efaA gene and 17(68%) of E.faecalis, 5(50%) of E.faecium, 5(100%) of E.avium were carrying esp gene while eep gene was carrying only by E.faecalis and E.faecium ; 12(48%) and 3(30%) respectively. Also the results revealed that only 1(4%) isolates of E.faecalis have enlA gene.

التحري عن بعض المؤشرات المناعية وارتفاع نسبة وجود الفيروس HCMV في المرضى المصابين بالفشل الكلوي == Assessment of Some Immunological Markers And Viral Load For Hcmv In Patients With Renal Failure

Author name: احمد جاسم شوالة الخويلدي
Supervisor name: مهدي حسين محيل العمار | زياد متعب الخزاعي
General topic: Biology
Specific topic: Microbiology - Viruses
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: اجريت هذه الدراسة على 150 مريضا الراقدين في مستشفى الصدرالتعليمي ومستشفى الحكيم (قسم الكلى) في محافظة النجف خلال الفترة الممتدة من كانون الاول 2012 الى شهر اب 2013. وكان الغرض من هذه الدراسة بيان علاقة الفيروس المضخم للخلايا بمرض الفشل الكلوي، تراوحت اعما | This study was carried out on 150 renal failure patients, who were admitted to the kidney department in AL - Sadder Medical City and Al - Hakeem hospital in AL - Najaf governorate during the period from December 2012 to August, 2013. Subjects of this study were Investigated for the role of Cytomegalovirus among them, their age ranged between (1 - 88) years. Twenty four (age - and sex - matched) healthy individuals without any evidence of chronic inflammatory disease depended as control. All patients and control divided in four age groups. Blood and urine samples were collected from patients and control for immunological (IgM, IgG, C3, C4, IL - 6, IL - 10, IL - 12 & IFN - ?) by using ELISA and molecular study by RT - PCR, respectively. The obtained results showed that HCMV - IgG antibody was 100% for all cases, while IgM was 18.66% compared with that of control. Real time - PCR amplification for presence of HCMV DNA in urine samples revealed that HCMV genome were detected in 22(14.66%) of the 150 urine samples in all age groups, that distributed into 12(21.05%) with viral load ranged (20 - 543840) Copy/ml in females and 10 (10.75%) with viral load ranged (40 - 28050) Copy/ml for males. The results of cytokines profile showed a highly significant(P<0.05) elevation in patients than control. According to sex females appeared higher IFN - ?, IL - 6, IL - 10 ( 83.86, 82.67, 9.06 pg/ml, respetively) than males were (76.57 , 79.36, 6.51 pg/ml, respectively). Where's IL - 12 were recorded higher elevation in male (28.83 pg/ml ) than females (27.35 pg/ml). According to age groups 41 - 60 age group showed high level in IFN - ?, IL - 6, IL - 10 were (96.45, 90.40, 9.62) pg/ml , respectively.While IL - 12 appeared high level (37.43 pg/ml ) in age group 1 - 20 years Complement fractions C3, C4 decreased in all groups of patients compared to those of a healthy control. C3 was recorded (64.37 mg/dl) in females, and (70.24 mg/dl) in males and decreased to (63.41 mg/dl) in age group (1 - 20) years, while C4 decreased significantly among sex it was (21.06 mg/dl) in females and(24.22 mg/dl) in males, and down to (21.65 mg/dl) in age group (21 - 40) years.The overall finding results showed that HCMV are more prevalence among chronic renal failure patients and cause immune suppressor for them by increase and decrease many immune factors.

دراسة جزيئية لعوامل ضراوة المكورات النعقودية السالبة لانزيم التجليط والمعزولة من اصابات مختلفة == Molecular Study of Virulence Factors of Some Coagulase Negative Staphylococci Isolated From Different Infections

Author name: سعاد عبد الهادي عبد الرزاق الحلو
Supervisor name: عباس شاكر جواد المحنة
General topic: Biology
Specific topic: Microbiology - Enzymes
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: The study aimed to investigating the role of coagulase - negative staphylococci in human infections, and determining the predominance genes of the virulence factors. Three hundred clinical specimens were collected from out and inpatients undergoing catheter related infections and twenty specimens were collected from healthy hospital staff as a control from January 2013 to July 2013 of Al - Zahraa Teaching Hospital, Al - Sader Teaching Hospital and Al - Hakeem Hospital in Al - Najaf Al - Ashraf province. The specimens were included urine, blood, vaginal swabs, seminal fluid and wound swabs. The specimens were cultured on mannitol salt agar and the primary identification was depended on Gram stained and biochemical tests. Then finally identification with Vitek 2 system is done.One hundred isolates were identified as coagulase - negative staphylococci (CoNS), Staphylococcus haemolyticus was identified as the most frequently isolated species in (53%), followed by Staphylococcus epidermidis (26%) and Staphylococcus hominis were recorded in (21%). Most of CoNS isolates were highly resistance to penicillin G (benzylpenicillin), oxacillin, cefoxitin and erythromycin; and low resistance to rifampicin, levofloxacin and others. While, control isolates results showed moderate resistance to penicillin G and erythromycin; low - level of resistance to cefoxitin, oxacillin and other antibiotics.The investigation of virulence factors revealed that 93% of coagulase - negative staphylococci isolates were production of slime layer, DNase 58%, protease 29% and hemolysin 88%. But the results gave negative result for TNase and lipase enzymes.Monoplex and multiplex PCR were used to explore the MecA, aap, icaA, icaD, atlE, sea, seb, sec, sed, hla, hlb, sspA, sspB, geh, nuc genes. The results showed that all CoNS isolates (100%) had mecA and atlEgenes, but 98% of isolates had aap, 93% icaA and icaD genes. PCR revealed that only (14%) of isolates had genes for enterotoxins expression. (92.86%) and (7.14%), sea and seb respectively, in contrast, the sec and sed genes were not be recorded.The result showed that 47% of CoNS isolates had hla gene and 41% contain hlb gene, 29% were positive for the sspA gene whereas the sspB gene and geh and nuc2 genes not found in any of staphylococcal isolates. Finally, the result indicated that 58% of CoNS isolates were expressed the nuc1 gene.Plasmid curing was carried out in order to determine the origin of resistance and some virulence factor genes (chromosomal or plasmid - borne gene). The curing (elimination) of the plasmids of coagulase - negative staphylococci isolated was catalyzed using ethidium bromide in different concentration and high temperature (44?C). The results showed that the oxacillin resistant coagulase - negative staphylococci were plasmid mediated since 93% of the isolates showed negative result on oxacillin resistance screening agar, and absence of mecA gene from all isolates. Also, 41 of coagulase - negative staphylococci isolates that showed ? - hemolysin became non - hemolysin after manipulated with ethidium bromide.Finelly, taking into consideration the etiological importance of CoNS has often been neglected, the present investigation confirmed that these microorganisms should not be ignored or classified as mere contaminant.

تقييم بعض المؤشرات الحيوية لدى الاطفال حديثي الولادة المصابين باليرقان الوليدي ومضاعفاته == Evaluation Of Some Biomarkers In Neonatal Jaundice Associated With It's Complication

Author name: سارة علي ناصر الجزائري
Supervisor name: محمد عماد منصور الغرابي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
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