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ارتباط التغايرات الوراثية لجينات نظام الدوبامين مع السلوك الاجرامي العنيف للسجناء العراقيين == Association of Dopaminergic System Genes Polymorphisms with Violent Criminal Behavior in Iraqi Prisoners

Author name: سهاد رضا متعب الطائي
Supervisor name: محمد عبد الله جبر جاسم
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The violent criminal behavior is emerged from the interaction between several genetics and environmental factors. The present study reflect the role of polymorphisms in dopaminergic system genes (drd2 ,comt ,dat1 ,drd4, and maoa) on violent criminal behavior in Iraqi prisoners.This research was a case - control study , blood samples were collected from 200 prisoners (case group) who convicted with terrorism (150 sample), murder (30 sample) and drug trading (20 sample) Issues selected from Al - Hilla reformist central prison for men and women in Babylon city and from position and deporting division in Karbala .This sample included (160 male and 40 female). Additionally, 100 sample were collected as control group included (54 male and 46 female).DNA was extracted and the polymorphisms analysis achieved by Restriction Fragment Length Polymorphism (RFLP - PCR) for drd2 and comt genes ,while the dat1 ,drd4 and maoa polymorphisms was analyzed by Polymerase Chain Reaction (PCR).All polymorphisms (except drd4) were subjected to PCR - sequencing for confirming the presence of polymorphisms .The results showed that the percentage of the case group was 34.5 % with an age ranged between 20 - 39 years ,most of them were male 80% ,72.5% were married ,77.5% were from rural area ,84% were self - employed and 41.5% were illiterate .Genetic analysis of drd2 TaqIA polymorphism demonstrated that a significant increase in the genotype frequency of A1/A1 was observed in case group (p = 0.03; OR= 4.93 ; 95% CI=1.08 - 22.5) and the A1 allele frequency was significantly associated with criminal behavior (p=0.03 ;OR=1.51; 95% CI=1.04 - 2.21).The comt (Val 158 Met) polymorphism revealed that the homo - mutant genotype A/A had significant higher risk of criminal behavior (p= 0.001 ;OR= 3.98 ; 95% CI= 1.7 - 9.3) when compared with control group. and the A allele(met allele) frequency was significantly associated with case group (p=0.003; OR= 1.68; 95%CI= 1.19 - 2.37).On the other hand , the analysis of VNTR polymorphism in dat1 gene showed non - significant difference in 9/9 genotype and 9R allele frequency between the study groups (p>0.05).The VNTR polymorphism analysis for drd4 gene revealed that the criminal individual who carried 7/4 genotype was significant higher than in control group (p=0.03;OR= 2.6, 95%CI= 1.09 - 6.17), and the 7R allele frequency was significantly associated with case group (p=0.04;OR=2.06; 95%CI= 1.04 - 4.1).Finally, the maoa VNTR polymorphism was analyzed in male and female separately due to the gene location on X - chromosome .The results demonstrated that there was non - significant difference observed between all genotypes and alleles frequencies between case and control male (p> 0.05),whereas in female a significant association in 3.5/3.5 and 5.5/4.5 genotypes (p<0.01) ,additionally the 3.5 R alleles was associated with higher risk of violent criminal behavior in female (p= 0.004;OR=2.62; 95%CI=1.36 - 5.05).These results suggested that the drd2 ,comt ,drd4 and maoa in female polymorphism might increase the susceptibility of individual to engage in to crimes in the presence of certain environment risk factors.

توصيف المركبات الفعالة في نبات الشويل Cressa cretica L. وتاثيرها في الفطريات المعزولة من التهاب الاذن الخارجية == Characterization of bioactive compounds in Cressa cretica L. and their effect on fungal otomycosis

Author name: اسيل محمد عمران الطائي
Supervisor name: نداء عدنان ابو سراج | ابتهال معز الحسيني
General topic: Biology
Specific topic: Plant
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: This study aimed to investigate the phytochemical components and antifungal activity of Cressa cretica L. using Gas chromatography - Mass spectrum (GC - MS) and Fourier transform infrared spectrophotometer (FTIR) techniques in addition to the characterization ( morphological and molecular) of fungal ear infection (otomycosis) and evaluate the antifungal activity (in vitro) of the C. cretica bioactive extracts. The secondary metabolites analysis of C.cretica extracts revealed the presence of phenols, alkaloids, terpenes, flavonoids, glycosides and tannins. The results of GC - MS reported 112 chemical compounds (30 in flowers, 34 in leaves, 23 in stems and 25 in roots). The results of the FTIR confirmed the presence of large numbers of functional groups in each part of the plant and these functional groups which varied according to the solvent type. More of these functional groups were alcohols, phenols, alkanes, alkyl halides, aldehydes, carboxylic acids, aromatics, nitro compounds and amines. The results were designed according to factorial experiments with complete randominal designed. Clinical diagnosis of otomycosis fungi revealed that there are 126 positive casesout of 185 cases included the filamentous fungi Aspergillus niger, A. flavus, A. terreuss, Penicilleum digitatium, either yeasts have included Candida parapsilosis, C. albicans, C. glabrata , C. Krusie. The percentage of Candida was 53.63% while the percentage of filamentous fungi was 46.36%, males was more infected than females, the age group 11 - 20 years old appear more affected than other age groups (19.8%), while the age group 31 - 40 years old and those who are older than 61 years were the least affected. Antifungal activity of C. cretica extracts revealed that each species of Candida had been affected by a part more than others, as well as a certain type of solvents, as follow : C. Parapsilosis largely affected by flowers extract when solvent hexane was used (the diameter of inhibition zone was 10.33 mm) at the concentration of 50%, while the C. albicans was most affected by whole plant when used ethyl acetate solvent (the diameter of inhibition zone was 10.92 mm). Stems extract by using hexane solvent was the most inhibitory growth effect on C. glabrata (the diameter of inhibition zone was 10.8 mm), while the roots extract by using methanol solvent showed largest inhibition on C. krusie growth (the diameter of inhibition zone was 8.56 mm). Minimum inhibitory concentration (MIC) reached to 25% on C. glabrata and C. krusie when using hexane stems extract and methanol roots extract respectively, while C. parapsilosis and C. albicans had reached the minimum inhibitory concentration to 30% when using hexane flowers extract and ethyl acetate whole plant extract.The results revealed that the alkaloids extract are the most effect against all species of Candida under study, the inhibition zone for C. parapsilosis was 4 mm diameters and 3.6 mm for C. albicans , 3.2 mm for C.glabrata and 5.2mm for C. krusie, followed by phenols extracts and terpens with the exception of C. albicans since terpenes extract had been more affected than phenols extracted, and this effect was increased with increasing the concentration of extract. When the C. cretica compared with the antifungal (Fluconazole) the results showed that the effect of extracts had greater inhibitory effect against otomycosis fungi, where the greatest impact of fluconazole was 8.23 mm at concentration 50% in the treatment of C. glabrata, and had the little inhibitory effect on the growth of C. krusie where the diameter of inhibition zone was 0.53 mm at the concentration 50%, and that the inhibitory effect increases with increasing concentration, while roots alkaloids gave inhibitory effect reached to 5.2 mm on C. krusie .

التغييرات الفسيولوجية والبايوكيميائية لنبات عين البزون باستخدام حامض الساليسليك خارج الجسم == In Vitro Physiological and Biochemical Changes of Catharanthus roseus Using Salicylic Acid Under Salinity Stresse.

Author name: هديل عامر كاظم
Supervisor name: بشير عبد الحمزة محمد العلواني
General topic: Biology
Specific topic: Plant
Degree: Doctorate
Language: Arabic
University location: Babylon
First pages:
Abstract: اجريت التجارب في مختبرات كلية العلوم في جامعة بابل ,خلال الفترة 2015 - 2016 ,لتقدير كمية منتجات الايض الثانوي(المركبات القلويدية : الفنكرستين والفنبلاستين)من اوراق وكالس نبات عين البزون Catharanthus roseus. تضمنت الدراسة تعقيم الاوراق وزراعتها في وسط الـ MSمضافا اليه منظمات النمو النباتية : (1 mg.l - 1) من كل من 2,4 - dichlorophenoxi acetic acid (2,4 - D) وBenzyl adenine (BA) من اجل تحفيز الكالس. بعدها اخذت كمية مماثلة من الكالس وزرعت في وسط الـ MS مع منظمات النمو ومضافا اليه تراكيز مختلفة من ملح الـ, 6, 9, 12 and 15 dS.m - 1 NaClوتراكيز مختلفة من حامض الساليسلك50,100,150 and 200 mg.l - 1,وعمل تداخلات بين الملح والحامض. وقد ارتفعت مضادات الاكسدة الانزيمية SOD,CAT,POX ومضادات الاكسدة الغير انزيمية AsA ,proline ,GSH وكذلك الـ MDAفي الكالس تحت تاثير التراكيز 9,12 and 15 dS.m - 1 من NaCl وكذلك التراكيز 150 and 200 mg.l - 1من الـSA بالمقارنة مع عينة السيطرة وكذلك مع الكالس من التداخلات 6 dS.m - 1 NaCl +50 and 100 mg.l - 1SA ازداد محتوى الفنكرستين في تراكيز الملح 9,12 and 15 dS.m - 1وكذلك في تراكيز حامض الساليسيلك150 and 200 mg.l - 1,وقد كان اعلى تركيز للفنكرستين عند التوليفة 150 mg.l - 1SA+ 12 dS.m - 1NaCl حيث وصل الى129.092 µg/g واعلى تركيز للفنبلاستين عند التركيز 50 mg.l - 1 SA حيث وصل الى16.231µg/g.. | This experiment was conducted in faculty of Science labs, Babylon University, during 2015 - 2016 for extraction, to evaluate the quantity of secondary metabolites which are Alkaloids : (Vincristine &Vinblastine) from the leaves and callus tissue of Catharanthus roseus. This study included sterilized leaves of Catharanthus plant to culture them on MS medium supplemented with plant growth regulators : 1 mg.l - 1 of 2,4 - dichlorophenoxi acetic acid (2,4 - D) and 1 mg.l - 1 of Benzyl adenine (BA) to induced callus. Then, identically callus fresh weight sub - cultured on the same MS medium supplemented with different level of salinity using 6, 9, 12 and 15 dS.m - 1,and different concentration of salicylic acid 50,100,150 and 200 mg.l - 1 and their interactions. The results revealed that antioxidant enzymes activity like Superoxide dismutase (SOD), catalase (CAT),and peroxidase(POX),and non - enzymatic antioxidants like Glutathione(GSH), proline, Ascorbic acid(AsA),and Malandialdehyde (MDA) were high in callus under 9,12 and 15 dS.m - 1 of NaCl ,and 150 and 200 mg.l - 1 of SA, than in callus control and callus grown in MS media supplemented with 6 dS.m - 1 NaCl and 50 and 100 mg.l - 1SA and their combinations. Vincristine was increased in 9,12 and 15 dS.m - 1 of NaCl ,and 150 and 200 mg.l - 1 of SA, and the higher content was in the combination 150 mg.l - 1SA+ 12 dS.m - 1 NaCl where it was 129.092 µg/g. The higher content of Vinblastine was in the concentration 50 mg.l - 1 SA where it was 16.231µg/g

تنقية جزئية وتوصيف Biosurfactant من بكتريا Bacillus subtilis وتاثيرها على نمو بعض عزلات البكتريا والفطريات

Author name: غـفـران فـلـيـح عـبد الـحـسـن عـزيـز الجـبـوري
Supervisor name: فاطمة عبد الحسين مجبل التميمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: تم الحصول على 102عزلة من العزلات البكتيرية من 40 عينة من عينات الترب الملوثة بالنفط من مختلف المناطق ورشة عمل السيارات، محطات وقود السيارات، مصافي النفط ولخمسة مناطق مختلفة في العراق . خضعت كل هذه العزلات الى الفحص المجهري والخصائص الزرعية ووجد ان 80 عزلة منها تنتمي الى جنس Bacillus ، هذه العزلات خضعت ايضا لاختبارات بايوكيميائية وشخصت بناءا على دراسة rDNA 16S من قبل مجموعتين من البرايمرات (andB16SF B16SR) و(1492R and 27 F) اذ وجد ان 51 عزلة منها تعود الى Bacillus subtilis . تم فحص جميع هذه العزلات من حيث قدرتها على انتاج biosurfactant عن طريق فحص النشاط انحلال الدم على وسط دم الاغنام حيث وجد ان جميع العزلات كانت من النوع تحلل الدم بيتا حيث تم فحصها اعتمادا على قياس الشد السطحي بعد زراعتها في Jacques medium اظهرت النتائج ان 46 عزلة من 51 عزلة كانت منتجة biosurfactant , وقد تم اختيار ثمانية منها تميزت بانتاجها لهذا المركب وهي (S1,S2,S3 S4,S5,S6,S7,S8) حيث كانت العزلة B. subtilis S4 هي الاكفا في الانتاج لذلك اختيرت في الدراسات اللاحقة . تم استخلاص Biosurfactant الخام من العزلات المختارة بواسطة وتنقيته جزئيا باستخدام طريقة Ion exchange chromatography باستخدام DEAE - Cellulose تلاها طريقة Gel filtration chromatography باستخدام Sepharose - 6B . تمت دراسة خصائص المركبات المنقاة واظهرت النتائج ان الوزن الجزيئي biosurfactant التي تنتجهاB.subtilis S4 تراوح بين (1036 - 1058دالتون) من خلال جهاز HPLC - TOF - MS . اظهرت النتائج ان الحد الاقصى لانتاج biosurfactant من العزلة تم بطريقة استخدام زيت الزيتون (3٪) وكبريتات الامونيوم (0.3٪) وKH2PO4 (1.5) غم / لتر، وبدرجة حرارة 30 مº والاس الهايدروجيني (7) وفترة الحضانة لمدة 72 ساعة. وقد تحققت اعلى نسبة للـ biosurfactant بعد مكملات الظروف المثلى الى 0.3 غرام / لتر من الوسط الزرعي . تم اختبارالنشاط البكتيري والفطري للعزلات الثمانية ضد بعض الجراثيم المسببة للامراض، وهي Staphylococcus aureus,Streptococcus pneumonia, Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis, Candida albicans , Candida tropicalis , Candida krusei , Rhizopus oryzae , Aspergillus niger وكانت العزلة الاكثر فعالية هي B.subtilis S4 التي اظهرت وجود نشاط ضد كل مسببات الامراض ماعدا S.pneumonia ,P.aeruginosa ,C.krusei . كما بينت النتائج ان مستخلص العزلة B.subtilis S4 اظهر اعلى تثبيط نموعند التركيز 1500 مايكروغرام / مل وصل الى 24 ملم ضد E.coli، 23 ملم ضد K.aerogenes، 21 ملم ضد S.aureus، 15 ملم ضدC.albicans، 14 ملم ضد P.mirabilis، 11 ملم ضد C.tropicalis، وتثبيط نمو الفطريات، حيث وصل معدل النمو الشعاعي الى 31.9 ملم ضد A.niger و9.7 ملم ضد R.oryzae عند التركيز 2 ملغم / مل. كذلك اظهرت النتائج ان سمية المستخلص B.subtilis خارج الجسم الحي على ذكور الجرذان البيض بلغت حوالي 922 ملغم / كغم وتشير اذ ان الاعطاء اليومي biosurfactant لم تظهراي حالة وفاة في اي جرعة ، ولم تلاحظ اي تغييرات غير عادية في السلوك اوتاثيرات سمية خلال فترة 28 يوما من العلاج. واثبت التحاليل انه ليس هناك اي تاثير سلبي على معايير الدم الفسلجية وهذا يؤكد صحة هذه المستحضرات الحيوية للاستخدام . | About 102 bacterial isolates were obtained from 40 oil contaminated soil samples from various automobile work shop ,cars fuel stations ,oil refineries of five different areas in Iraq. Microscopic examination and cultural characteristics for all isolated were investigated , 80 isolates were found to be related to the genus Bacillus , Bacillus isolates were subjected to the biochemical tests and molecular identification based on the 16S rDNA by two sets of primers (B16SF and B16SR) , (27F and 1492R) of these 80 isolates revealed that 51 of the identified isolates belonged to Bacillus subtilis.All these isolates were screened for their ability for biosurfactant production through blood haemolysis activity on sheep blood agar indicated that all isolates were β - hemolysis while screening depended on measuring the lowering surface tension of cell free supernatant after cultivation in jacques medium which referred that 46 of 51 isolates were biosurfactant producers. Eight isolates were selected for the best biosurfactant producer isolatesCrude biosurfactants produced by the selected isolates were extracted by acid precipitation followed by partially purified with dichloromethane followed by purification and characteristics, the results showed that the molecular weight of biosurfactant produced by B.subtilis S4 ranging between 1036 - 1058 Da . Optimum conditions for biosurfactants production from B. subtilis S4 were determined. Results showed that maximum biosurfactant production from this isolate was achieved by using 3% olive oil , 0.3 % ammonium sulfate and 1.5 g / l Potassium dihydrogen phosphate ,at pH7,30 ºC and incubation period for 72 hrs. Maximum biosurfactant production was achieved after the supplementation of the optimum conditions was 0.3 g/l of culture medium .All of the eight isolates were tested for antimicrobial activity against twelve pathogenic microorganisms : Staphylococcus aureus ,Streptococcus pneumonia,Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis Klebsiella aerogenes,Candida albicans,C.tropicalis,C. krusei , Rhizopus oryzae , Aspergillus niger and Penicillium notatum.The most effective isolates were B.subtilis S4 which showed antimicrobial activity against some tested pathogens except S.pneumonia ,P. aeruginosa ,C.krusei and P.notatum.The results indicated that S4 culture extract showed high growth inhibition zone in concentration 1500 µg /ml reached to 24 , 23, 21, 15, 14 and 11 mm against E.coli , K.aerogenes , S.aureus , C.albicans, P.mirabilis,C.tropicalis respectively and high reduction in of radial growth of the fungi reached to 31.9 and 9.7 mm in A.niger and R.oryzae respectively at 2 mg /ml concentration .Study in vivo potential toxicity of B.subtilis lipopeptide biosurfactant towards male rat was evaluated. An LD50 value was determined to be about 922 mg / kg. Results show that daily administration of biosurfactant did not show any death cases at any dose. Also, no unusual changes in behavior and no intoxication were observed during the 28 days period of treatment. Analysis proved that there were no significant adverse effect on hematological parameters and this confirms the validity of those biopharmaceuticals on body of mammals.

دراسة جزيئية ومناعية لفايروس النورو والفايروس الغدي نمط 40 و41 في الاطفال المصابين بالاسهال == Molecular and Immunological Study of Norovirus and Adenovirus types 40 and 41 in Diarrheic Children

Author name: رمله احمد محمد حسن العميدي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت هذه الدراسة الى التحري عن فايروسي النورو والفايروس الغدي نمط 40 / 41 في الاطفال المصابين بالاسهال واجراء تحليل لمعدل الاصابة وطبيعتها ودراسة الطبيعة الجزيئية للفايروسين وكذلك التحري عن قدرة الفايروسين على حث الجهاز المناعي وتحديد بعض الحركيات الخلويه عند الاطفال المصابين بالفايروسين.بالاضافة الى دراسة بعض ملامح الاصابه مثل تغاير الفصول والعمر وتحديد افضل الطرق لتشخيص الفايروسين. اجريت الدراسة الحالية في محافظة النجف الاشرف /مستشفى الزهراء التعليمي للولادة والاطفال خلال الفترة من كانون الثاني2014 الى كانون الاول 2014 والتي تضمنت 314 عينه من البراز والدم من الاطفال المصابين بالاسهال والذين تتراوح اعمارهم بين شهر الى خمسة سنوات.حيث اعتمد التحري في عينات البراز استخدام اختبار الكروماتوغرافيا المناعي السريع للكشف عن المستضدات الفايروسية للفايروسين النورو والغدي نمط 40 / 41.كما تم تاكيد العينات الموجبة بواسطة تقنية PCR Real Time لفايروس النورو تقنية PCR للفايروسالغدي نمط40 / 41،والتي اظهرت فيها النتائج بان معدل الاصابة كان 11.7% لفايروس النوروو8.9% للفايروس الغدينمط 40 / 41.كذلك تم فحص العينات الموجبة بواسطة المجهر الالكتروني والتي بينت مظهر للفايروسين في عينات البراز . وتشير الدراسة الى ان التقنيات الجزيئية المستخدمة في فحص العينات هي الاكثر كفاءة للتشخيص الروتيني للفايروسين مقارنة مع المجهر الالكتروني لتشخيص عينات الاسهال.وطبقا للفئات العمرية ،اظهرت النتائج ان الفئة العمرية 13 - 24 شهر سجلت ارتفاع عالي للاصابة بالفايروسين النورو والغدينمط 40 / 41.الحالات الايجابية كانت بين الاطفال الذين يتغذون على الحليب الجاف الاصطناعي (31 حاله) مقارنة مع الرضاعة الطبيعية من الام (14 حاله).اما نتائج الاعراض السريرية في الاطفال المصابين بالفايروسين فاظهرت ان كل الحالات تبين وجود اسهال من النوع المائي المخاطي وبنسبة 100% يليها الالم البطن بنسبة 94.5% و82.1 %،التقيؤ بنسبة 81 % و78.5 % واخيرا الحمى بنسبة 78.3% و71.1 % لكلا من النورو والغدي نمط 40 / 41 على التوالي. كما كشفت الدراسة الحالية بان معدل الاصابة المرتفع لفايروس النوروكان من شهر كانون الثاني الى اذار والتي كانت بنسبة 81%من الحالات الموجبة ، اما بالنسبة لفايروسالغدينمط 40 / 41كان معدل الاصابة المرتفع من شهر كانون الثاني الى نيسان والتي كانت بنسبة 89.2% من الحالات الموجبة. كما اظهرت النتائج وجود ارتفاع كبيرفيالحركيات الخلويه (السايتوكينات) لمصل الاطفال المصابين مقارنة مع السيطرة. وفقا للفئات العمرية ،اظهرت الفئة( 49 - 60) شهر ارتفاع عالي في مستويات الانترفيرون كاما ، الانترلوكين - 6((IL - 6 والانترلوكين - 12 (12 IL - (حيث كانت للفايروس النورو(90.8, 56.7, 84.3) جزء من الغرام /مل على التوالي،بينما كانت لفايروسالغدي(106.5, 59, 87.5)جزء من الغرام /ملعلى التوالي مقارنة مع مجموعة السيطرة. | Norovirus and adenovirus types (40 and 41) are the important causes of gastroenteritis infections in children worldwide. The present study was designed to determine the incidence and nature of infection of norovirus and adenovirus types (40 and 41) at molecular and immunological levels, as well as some features such as seasonal variation , age distributions and detected the most effective and suitable method for diagnosis of the two viruses . The study was carried out in Al - Najaf province, in AL - Zahra teaching hospital for maternity and children, during the period from January, 2014 to December, 2014. Stool and blood samples were collected from 314 children with diarrhea, their age range (from 1months to 5 years). Immunochromatographic assay for norovirus and adenovirus used to detect their antigens in stool samples, the positive results were confirmed by reverse transcriptase real time PCR technique for norovirus and polymerase chain reaction technique for adenovirus types (40 and 41), which showed incidence of 11.7% and 8.9% for norovirus and adenovirus, respectively. Transmission electron microscopy examination gave clear positive norovirus and adenovirus types (40 and 41) appearance in diarrheal stool samples .The study indicates that molecular methods are most suitable and sufficient tests for routine diagnosis of norovirus and adenovirus types (40 and 41) as compared to transmission electron microscopy analysis for diarrheal samples. According to age groups, the results showed that the majority of infections with norovirus and adenovirus were recorded among age group (13 - 24) months. The positive cases were highly among infants fed with bottle fed (31 cases) compared with infants fed with breast fed (14 cases). Regarding the clinical features of children with viral diarrheal infections , the results showed that all of the cases of both viruses complained of watery or mucosal consistence stool (100%) followed by abdominal pain (94.5%) and (82.1%), vomiting (81%) and (78.5%) , and fever (78.3%) and (71.4%) for norovirus and adenovirus positive children respectively. The present study also revealed that a higher incidence of norovirus was detected from January - March 2014, when it was found in 81% (30/37) of the positive cases, whereas the incidence of adenovirus was higher from January - April 2014, during which it was found in 89.2% (25/28) of the positive cases. The current study for cytokines profile detection showed that significant elevation in patients with norovirus and adenovirus than control. The age groups 49 - 60 months have shown a high level in cytokines Interferon gamma, Interleukin - 6 and Interleukin - 12 with concentration were (84.3, 56.7, 90.8) pg./ml , respectively for norovirus while adenovirus were (87.5, 59, 106.5) pg./ml , respectively as compared with control group . Conclusion of the study shows incidence norovirus genotypeII (GII) and adenovirus types (40 and 41) by rapid chromatographic test from infected children in Al - Najaf province. The study indicates that molecular techniques are most suitable and sufficient tests alternatively for transmission electron microscopy when there is good facility and both can replaced by rapid chromatographic test . Interferon gamma, Interleukin - 6 and Interleukin - 12 were increased in all patients with norovirus and adenovirus infections and showed high level in age group (49 - 60) months

دراسة حيوية وتشخيص جزيئي لداء الاكياس العدرية في المضائف الوسطية اعتمادا على تحليل تتابع جينات rDNA - ITS1 وmtCOX1 في محافظة ذي قار == Biological Study and Molecular Identification on Hydatidosis in Intermediate Hosts Depending on Sequence Analysis for rDNA - ITS1 and mtCOX1 Genes in Thi - Qar Province

Author name: وسام جاسم حنش
General topic: Biology
Specific topic: Microbiology - Parasites
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The present study was carried out in Thi - Qar province during the period from beginning of January until the end of December 2015 to investigate the prevalence of infection with hydatidosis in human and other intermediate hosts. The molecular techniques was used to detect the strain of Echinococcus granulosus. The present study diagnosed 58 infection with hydatidosis in different organs such as liver, lungs, kidney and spleen of surgically treated patients in AL - Hussein Imam Teaching Hospital inNassiriyah city, centre of Thi - Qar province. The total number of hydatid cysts was 72 cyst in different organs with total intensity of infection 1.24. The females recorded highest percentage of infection 67.24% than males 32.76 %, and the age group 21 - 30 year showed highest percentage of infection 24.14 % . The lowest percentage recorded in age group more than 60 year 5.17 %.The results of study showed that right lobe of liver was more affected 58.62 % than left lobe 13.79 %. The percentage of left lung infection was 10.34 % while right lung 8.62 %. The total average of fertile cysts in infected organs was 81.82 % and sterile cysts 18.18 %. The highest percentage of infection was recorded in house women 87.18 %. The number of recorded cases in Nassiriyah district was 21 case with percentage of infection 36.21 %.During the same period a total of 1303, 1287, 405, 90, and 294 head from sheep, cattle, buffaloes, camels and goats were examined respectively.The percentage of infection was 7.83 %, 7.69 %, 3.46 % and 2.22 % in sheep, cattle, buffaloes and camels respectively, and no infection was recorded in goats. The intensity of infection was 4.07, 3.27, 1.64 and 2 in sheep, cattle, buffaloes and camels respectively. The results of statistical analysis showed no significant differences (P????0.05) in percentage and intensity of infection.The percentage infection of liver, lungs and both together in sheep was 5.45 %, 1.23 % and 1.15 % respectively, and there was no significant differences in percentage of infection but intensity of infection differed significantly(P????0.05). The percentage of liver, lungs, both together and spleen infection in cattle were 3.11 %, 2.95 % , 1.55 % and 0.08 % respectively while intensity of infection in liver, lungs, both together and spleen was 2.5, 2.18, 7 and 1 respectively. The percentage of liver, lungs and both together infection in buffaloes were 2.22 %, 0.99 % and 0.25 % respectively while intensity of infection in liver, lungs and both together was 1.89, 1 and 2 respectively. No significant differences in percentage and intensity of infection in camels andboth percentage and intensity of infection in liver and lungs were 1.11% and 2 respectively.High significant differences was recorded between percentage infection in males and females of animals. The percentage of infection in females were 15.87 %, 13.42 %, 6.99 % and 3.45 % in sheep, cattle, buffaloes and camels respectively. Highest percentage of infection were 0.72 %, 0.18 % and 0.46 % in males of sheep, cattle and buffaloes respectively. No infection were recorded in males of camels.T he age was effect on percentage of infection and big aging groups recorded in sheep, cattle, buffaloes and camels. The present study recorded significant differences in percentage of fertile hydatid cysts in liver and lungs of animals and highest of percentage of fertility recorded in liver and lungs of sheep 84.21 % and 79.24 % respectively and lower percentage of fertility was in liver of buffaloes 11.11% and liver of cattle 14.70 %. The lower percentage of sterile hydatid cysts was in liver and lungs of sheep 15.79 % and 20.75 % respectively and highest percentage recorded in liver of buffaloes 88.88 % and spleen of cattle 100 %.S t a tistical analysis using of ANOVAs test showed no significant differences in total length, length of blade and width for large and small protoscolices hooks of hydatid cysts isolated from liver and lungs of sheep, human, cattle buffaloes, camels and hooks of sheep which is showed genetic variations (new strain).The PCR - RFLP technique was used in identification of E.granulosus strains infecting human and intermediate hosts in Thi - Qar province. The molecular study is carried out on 75 hydatid cysts collected from human, sheep, cattle, buffaloes and camels. The DNA is extracted from protoscolices of hydatid cysts isolated from infected organs. PCR - RFLP technique showed that sheep strain G1 of E.granulosus is predominant in Thi - Qar province depending on amplification of rDNA - ITS1 gene. The PCR products in all DNA samples showed 1000 bp approximately. Alu1 endonuclease with rDNA - ITS1 demonstrated two bands 800 bp and 200 bp approximately, while Rsa1 endonuclease showed two bands 655 bp and 345 bp approximately which is similar to sheep strain genotype 1.Sequence analysis for rDNA - ITS1 gene showed the presence of sheepstrain genotype 1 which is similar 100 % to sheep strain in gene bank exceptone isolate (sheep liver) was differs from other strains in position ofnucleotide sequence. It was similar 99 % for sequence of sheep strain. Thedata base of this new strain was recorded in gene bank for DNA sequence National Center for Biotechnology Information (NCBI) and European Nucleotide Archive (ENA) for the first time globally under the name Echinococcus granulosus strain WH1AW2 (GenBank : LT547814). Polymerase chain reaction technique and sequence analysis of mtCOX1 gene showed the presence of sheep strain G1 of human, sheep, cattle, buffaloes and camels. The sequence analysis showed the genetic variation in mtCOX1 gene for hydatid cyst in infected sheep represented by point mutation type transition which caused change Adenine to Guanine, and sequence data base of the sample recorded for first time in NCBI and ENA (GenBank : LC203589). Buffaloes strain G3 isolated from human lung recorded for first time in Thi - Qar province depending on comparison of samples sequences with source strains recorded in gene bank (NCBI) using "BLAST". The size of bands for mtCOX1 gene was 450 bp in all samples

مستويات الاديبونكتين والابلين والهرمونات الاخرى والمعايير الدموية اثناء الحمل وفي مرضى متلازمة المبيض متعدد الاكياس == Adiponectin, Apelin and other Hormones Levels and Blood Indices during Pregnancy and in Patients with Polycystic Ovaries Syndrome

Author name: هناء سلمان كاظم
Supervisor name: طه جاسم الطه | علي فالح الاسدي
General topic: Biology
Specific topic: Zoology - Physiology
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The present study aimed to determine the levels of adiponectin and apelin and their relations with all parameters. Investigation in the present study included; hormones, lipid profile, liver enzymes activity and haematological profile in groups of Iraqi Basrah pregnant women during different months of pregnancy and to correlate these levels to maternal age, Body Mass Index, excepted parity and sex of fetuses and correlated with level of adiponectin and apelin hormones only and the results were compared with non - pregnant females as control group. The present study included (180) women ranging from 20 - 40 years old, out of them (70) pregnant and (20) non - pregnant women with polycystic ovary syndrome (PCOs), and (90) females non - pregnant were considered as control group. The pregnant women attended the obsteric units in the general state hospitals in Basra Governorate. They are as follows : Al - Basra General Hospital for Maternity and Childhood, Al - Mawane, Al - Fayha’a and Basra General Hospital which drain most patients from urban and rural areas. None of the selected women suffered from any type of disease. Required data were collected by the researcher depending on direct interview with women before being admitted to the study, using a questionnaire including information on age, parity, month of pregnancy, and geographical area..The Women were divided into two age group (≤ 27 and ≥28 years). Moreover, females were also divided according to BMI into normal (≤ 25), over weight (25 - 30) and Obese (≥30).The month of gestation was determined not only from the date of the women’s last menstruation (LMP) but also according to the ultrasonic reports that pregnant women had. Blood samples (10 ml) were taken from pregnant women at the end of each month of pregnancy and from control group as well as from women with PCOs. Each blood sample was divided into EDTA tube (2 ml) which was used for complete hematological picture study (RBC, Hb, PCV, PLT, WBCs count and WBCs differential count) and the plain tube (8 ml) where the serum was obtained, for biochemical study (Adiponectin, Apelin, testosterone, Progesterone, estradiol, follicular stimulating hormone, luteinizing hormone, insulin, lipid profile and liver enzymes).The results indicated that maternal age had no significant effect on the level of adiponectin, apelin, FSH and LH hormones, while the study showed a significantly effect on level of progesterone, estradiol, testosterone and insulin hormones between pregnant and non - pregnant women. Adiponectin levels decreased in pregnant and non - pregnant females with increased body mass index whereas apelin, estradiol, progesterone and insulin levels increased. When the comparison between pregnant and non - pregnant women was done, a decrease in adiponectin and apelin was noticed. Accompanied by an increase in the level of estradiol, testosterone, progesterone and insulin hormones in pregnant women compared to non - pregnant women.Women with PCOs showed low levels of both Adiponectin and apelin with high levels of Testosterone and Insulin.Results also revealed that age had no effect on total cholesterol, triglycerides, and HDL, in both pregnant and non - pregnant females, but when the BMI was taken in consideration, high levels of these parameters were found in - group of BMI (obese). In addition, the present study showed that age had no effect on liver enzymes (AST and ALT) while ALP showed that the behavior increased up as a different high body mass index in pregnant women, in comparison with the control group. However, ALP activity also increased in high BMI group.Hematological study showed that age had no effect on RBC, Platelets, and hematocrit. Similar results were found when BMI was taken in consideration. Total WBCs showed a non - significant increase in pregnant women as compared with the control group. Adiponectin levels were significantly higher in pregnant females carrying female fetuses compared to those with male fetuses, while the other hormone apelin did not differ between the two groups. The Result of the present study revealed that adiponectin was significantly decreased as apelin was significantly increased with the increased parity.

دراسة فعالية بعض مستخلصات الطحلب الاخضر Enteromorpha intestinalis (L.,1820 على الاكياس العذرية للمشوكة الحبيبية Echinococcus granulosus (Batsch,1786 وكمضادات لخط الخلايا السرطانية نوع HeLa == Study of the activity of some of the green alga Enteromorpha intestinalis (L.,1820) extracts on Hydatid cysts of Echinococcus granulosus (Batsch,1786) and as anticancer cells type HeLa

Author name: غزوان طالب نوري الجابر
Supervisor name: صبيح هليل المياح | احمد محسن عذبي
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The present study was conducted in order to evaluate the activity of green alga Enteromorpha intestinalis extracts (methanol and hexane extracts) on growth and development of hydatid cysts of Echinococcus granulosus in vitro and in vivo by using mice type Mus musculus Balb\c that in comparing with albendazole drug. Anti - cancer activity was also evaluated in vitro for both algal extracts by using HeLa cells. Chemical compositions of algal extracts were analyzed by using Gas chromatography - mass spectroscopy (Gc - mass)technique . The hydatid cysts were collected from livers and lungs of infected sheep which slaughtered in Basrah abattoir. While, The algae specimens were collected from Abu Sokhir marshland area /north of Basra. The results revealed that E.intestinalis chemical compounds are carbohydrate , alkaloids, phenols , saponins , triterpenes and sterols compounds. In vitro study showed that the 1 mg / mouse weight of albendazole drug was able to reduce the percentage of protoscolices activity to zero after the third day of treatment. While, the dose 6 98 mg / kg of methanol extract inhibited all protoscolices after five days of treatment, followed by the dose 804 mg / kg of hexan extract that inhibited all protoscolices after six days of treatment.In vivo study revealed that the methanol extract (698 mg / kg) treatment was the best in reducing the weights of organs significantly in comparison with the positive control group it was 2.192 , 0.192 , 0.434 and 0.282 g of liver, spleen, lung and kidney respectively. The methanol extract (698 mg / kg) treatment lowered the average number of hydatid cysts (2.6) more than other extracts treatments , then followed by hexane extract (804 mg / kg) treatment it was 2.8 cyst .This study has identified that the liver enzymes Aspartate transaminase (ALT) and Alanine transaminase (AST) values in the serum of positive control group were higher significantly than negative control group the value of the enzyme ALT was 79 IU / l and the value of the enzyme AST was 118.4 IU / l.All methanolic extracts groups showed a preference in enzyme's values compared with other treatments groups , the value of ALT enzyme of 698 , 688 and 678 mg / kg of methanol extract groups were 46.8 , 45.8 and 44.6 IU / l respectively, while all hexane extracts groups showed a preference in AST enzyme values compared to the other treatments groups, the value of AST enzyme of 804 , 794 and 784 mg / kg of hexane extract groups were 73.6 , 70.2 and 70.4 IU / l respectively. Found a significant increase in the number of white blood cells WBCs in a positive control group ( 4.6 × 013μ), compared with a negative control group and the other groups, While it has been found significant decrease in the Hb (5..8deciliter) and Packed cell volume (PCV) (31..%) values in positive control group as compared with control negative group. The study found that the number of white blood cells WBCs n the methanolic extract group (678 mg / kg) was 4.06 × 103 microliter was as same as in the negative control group, In contrast, hexane extract group (804 mg/ kg) has did not significant difference with negative control group in the Hb and PCV were 11.5 g / dl and 36.8% respectively .Histological study confirmed that there are the histological changes in positive control group included congestion , bleeding , degeneration , infiltration of inflammatory cells and hyperplasia. Whereas the histological changes in group treated with albendazole were bleeding, infiltration of inflammatory cells , atrophy of the glomerulus and fibrosis in some areas . In algal extracts groups the histological changes were infiltration of inflammatory cells, bleeding and congestion.The Gc mass results revealed that the ethanol extract contains loliolide , ethyl stearate , palmitic Acid , ethyl palmitate , phytol , ethyl oleate , ethylhexyladipate and squalene compounds. While, hexane extract has N, Ndimethyltetradecylamine , diisobutyl phthalate , palmitic Acid , ethyl palmitate and ethylhexyladipate compounds.Anti - cancer study showed the algal extracts have an inhibition activity against cancer cells, The half maximal inhibitory concentration (IC50) value of the methanol extract was 79.08 μ/ ml, While, the IC50 for hexane extract was 156.3 μ/ ml.

دراسة تشريحية تصنيفية لبعض من نباتات العائلة السوسبية Euphorbiaceae في العراق == Anatomical and Taxomanical study for some plant of Euphorbiaceae family in IRAQ

Author name: امل علي ياسين الحسن
General topic: Biology
Specific topic: Plant
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The study was conducted to investigate several taxonomic aspects which comprised the micro - morphological studies of epidermal layer of leaves, pollen grains, fruits and seeds.In addition to that, the anatomical and molecular studies for 12 species of Euphorbiaceae family which belonged to five genera AndrachneL. , Chrozophora L., Euphorbia L, Mercurialis L. and RicinusL., were performed. One representative species for each genuswas selected; in exception 8 species were chosen for the genus Euphorbia..The current results confirmed that the anatomical characters showed valuable taxonomic traits which can evidently be used to distinguish between species. The most prominent trait was mesophylla tissue in leaves which were observed in three categories;1 - Bifacial leaves : - which found in C.tinctoria, Euphorbia sp ., E. milii, E.annua and R.comminus 2 - Uni - facial (heterogenus) leaves : - this category of the mesophyll was detected in two species only A.telephioides and E.prostrata3 - Uni - facial (homogenus) leaves : - this category were noticed in five species; E.denticulata ,E.helioscopia ,E,macrocarpa , E.microsphaeia and E.peplus The second important comparative anatomical character was the Mid rib, which are in four types with several shapes from which discrimination between the species can be made : - 1. Convex - concave mid rib : - that was showed in E.helioscopia, E.macrocarpa, E.milii and M.annua.2. Convex - convex : - This type was found in three species C.tinctoria , Euphorbia sp.and R. comminus3. Flat - Convex : - This type of mid rib was observed in A.telephioides E.microsphaera, E.peplus and E.prostrata4. Flat - Flat : - This type was observed in only one species E.denticulata In stem, the most prominent parts of taxonomic evidence were pith and vascular bundles.In according to the pith, species can be divided into hollow stem (without pith) and solid stem (containing medulla good configuration). Hollow stem was clear in the stems of A.telephioides , E.microsphaera , E.prostrata and M.annua. While, the solid stem wasseen in the remaining species. Vascular bundles were existed in two types; that's connected vascular bundles that's characterized the hollow stems, and separate vascular bundles. In most of the species with the exception of M. annua, stem with scatteredvascular bundles were in cortex As well as, petiole which have features that a clear taxonomy values .either by outline of petiole or its vascular arc.Micro - morphological studies of epidermal layer of leaves showed very important taxonomical value. This layer of leaves reveals variation in shape of ordinary epidermal cell and nature of anticline cell wall, stomata complexes and Epicuticlular wax crystals.Micro - morphological of pollen was taxonomic evidence as well. It can be considered to divide the species of Euphorbiaceae family into two groups based on the number of germination apertures 1 - Hexocorporate : - this type was confined to C.tinctoria2 - Tricolporate all species studied remainingThe sculpture of pollen wall provided beneficial information invested in the species identification.Both seeds and fruits showed a distinctive role in species identification. Micromorophological study of seeds for species which belong to six genera Andrachne , Chrozophora, Euphorbia, Mercurialis , Phyllanthus and Ricinus were achieved by using Scanning Electron Microscope(SEM). The study concentrated on micro - morphological aspect of Caruncle, seed surface ornamentation and the shape of epidermial cell wall. The result revealed that most studied species were with carunclated seeds ,but some specieswere with ecarunclated seeds as in A.telephioides L. ,C. tinctoria( L) Raf , E.prostrata Atin and P. maderaspatensis L Seed surface ornamentation characteristics showed a significant taxonomical value.Furthermore, current result showed that there are a highly variation in shape, size and color of the seeds walls. With respect to the fruits characteristics, which showed variations in number of mercarpi, shape, size, color and surface ornamentation that can be adopted in the separation of the species studied Molecular study provided significant support for phenotypic and anatomical classification and support genetic convergence between the species in Euphorbiacea family. The genus Euphorbia species showed a significant genetically convergence and participated in predecessors monophyletic. However, the genera in Euphorbiacea family under study probably originated and evolved from different ancestors’ polyphyletic.

دراسة تصنيفية وحياتية للديدان الخيطية عائلة Tetrameridae Travassos, 1914 المتطفلة على بعض انواع الطيور في هور السناف محافظة ذي قار == Taxonomic and Biological Studies of Nematodes of the Family Tetrameridae Travassos, 1914 in the Some Birds in Sinaph marsh Thi - Qar province

Author name: نهى جبار عبد الركابي
Supervisor name: باسم ھاشم عبد الله
General topic: Biology
Specific topic: Microbiology - Parasites
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: A total of 401 represented by 128 birds of Himantopus himantopus which belong to the family Recurvirostridae , 93 birds of Chettusia leucura which belong to the family charadriidae and 180 birds of Sturnus vulgaris which belong to the family sturnidae at the period from April 2014 to march 2015 in Al - Sanaf marsh , Suq - Al - Shuyukh city southern of the Thi - Qar province,for searching the nematodes which belong to the family Tetrameridae. Four species of nematodes, which belong to the family Tetrameridae, were isolated in the current study. They were T.nouveli, T.dubia, T.spinosa and Microtetrameres inermis. The H. himantopus was infected with the nematode T.nouveli and the prevalence of infection was 25.8% , bird.Furthermore, the Chettusia leucura was infected, the mean intensity was 3.3 worm in each infected birds. The nematode T.dubia was isolated from H. himantopus with the isolated from the Ch. Leucura mean intensity was 1.7.The nematode T.spinosa was isolated from H. himantopus the the mean intensity of infection was 2.3 and it was isolated from the Ch. leucura , the prevalence of infection 4.3% and the mean intensity was 1.8 worm in each infected worm.The record of these three nematode is considering the first record in Iraq.Microtetrameres inermis was isolated from the Sturnus vulgaris, the each infected birds.Himantopus himantopus from April 2014 to March of 2015.This bird was infected with three species from family Tetrameridae, The seasonal variation study of infection prevalence of Tetrameres spp.in, H. himantopus that there was II Summarycomplete seasonal cycle for nematodes T.nouveli, T.dubia , and T.spinosa .The nematode T.nouveli had hightest infection prevalence in summer the decrease in autumn, winter and spring while the infection prevalence of nematode T.dubia was hight in summer and autumn then decrease in winter and spring. The infection prevalence of nematode T.spinosa was generally low with little increase in autumn .The results of the current of the Ch. leucura indicated that this bird was infected with three species which nematodes T.nouveli, T.dubia and T.spinosa and they had seasonal appearance . There was not any significant effect of host sex on prevalence of infection, and it showed decreased in prevalence of infection when the bird's weight was increased.The study of lifecycle of nematodes : T.nouveli ,T.dubia and M. inermis revealed obtainment the larval stages after success the infection experimental of the grasshopper Schistocerca gregaria for the first time the three isolated nematodes from family Tetrameridae in this study which it was T.nouveli , T. dubia and M.inermis and was included the lifecycle of the three species . The differences were including the period of time to produce and developing the larval stages in addition to the differences in their shapes, it was revealed that were clear differences in the structure and their shape of the tip the posterior end of the third larval stage. The end of the third larval stage of the nematode T. nouveli had three caudal papilla and the posterior end of nematode T.dubia had five caudal papilla while the end of the third larval stage of M.inermis did not have any caudal papilla , so we can distinguish these nematode larval stage depended on the prevalence this character in their third larval stage.The experimental infection of the Columba livia domestica with nematode M.inermis was successful.While the experimental infection to the Columba livia domestica with nematode T.nouveli ,T.dubia .was failed The experimental infection of the Gallus domestica with nematodes of Tetrameridae T.nouveli, T.dubia and M.inermis was failed too.

دراسة تشخيصية وحياتية لعلقة المياه العذبة Dina punctata Johansson, 1927 (Erpobdellidae : Hirudinea في اهوار السويب من محافظة البصرة جنوب العراق == Identification and Biological study of the Freshwater Leech Dina punctata Johansson, 1927 (Erpobdellidae : Hirudinea) in AL - Swaib Marshes From Basrah province south of Iraq

Author name: ازهر محمد غالي الخزعلي
General topic: Biology
Specific topic: Zoology - Invertebrates
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The species Dina punctata is recorded for the first time in Iraq (from Al - Swaib marshes). The identification was conducted morphologicaly and molecularly characteristics. The morphological features summarized as : - - The species D. punctata has vermiform body compressed ventrally, ranging in length from 55 - 60 mm and in diameter from 0.5 - 2 mm. The individuals have a large ability for extening. The pointed anterior end carries small anterior sucker which resembles lips surrounding the mouth opining, while the rounded posterior end carries large rounded posterior sucker. - This species is characterized by heterogeneous features such as the color of the body which changes from blackish gray for Adults to dark brown for Juveniles, as well as the number and arrangement of eyes which is in general four pairs arranged as reverse U shape located on the dorsal anterior edge. The first two pairs of eyes are located on the middle line of the body while the third and the fourth pairs are each located on one side of the body behind the anterior pairs. - The body consists of 34 segments, each of them is divided to five secondary annuli. The fifth annuli of each segment is divided into two subsections, thus the main segment becomes consist of six annuli. - The male and female gonopores are open on the ventral surface of the 12th segment, separated from each other by two annuli, the male gonopore is usually larger and clearer and located forward in the middle of the groove which is separate the annuli b2 and a2 respectively. The female gonopore is smaller and located in the back of the male gonopore in the middle of the groove which is separate the b5 and b6 annuli respectively.Because of the instability in some morphological features, the species D.punctata also identified in the present study according to genetic features.During the genetic study, the region of internal transcription space (ITS2) in DNA was isolated from leech specimens by using special primers for region internal transcription space (ITS2), after isolation, the ITS2 genes are amplified.The results of polymerase chain reaction of DNA were obtained of single bands of 580 base pairs molecular weight for all degrees of hybridization. The sequence of each sample after detecting was entered in the database of National Center Biological Information (NCBI) and the result showed that the sequences of all samples are belonging to the species D. punctata. In the field study, monthly samples of leeches D. punctata was collected from the marshes of Al - Swaib on the eastern side of Shatt Al - Arab river inQurna northern Basrah Province during the period from January 2015 to December 2015. A total of 235 individuals and 623 Cocoon were collected during the study period. The highest number was 58 recorded for individuals during May 2015, while being 335 recorded for cocoons during February 2015. On the other hand there is no occurrence recorded during July - August for individuals, and June - November for cocoons.The study investigates the water temperature, salinity and abundance of individuals and cocoons. The statistical analysis showed negative correlation between temperature and abundance of both individuals and cocoons, while the correlation of salinity was slightly positive with abundance of individuals and cocoons.The study of population sizes structure showed that the size class 40 - 50 mm has the highest frequency during the study period compared with the other size classes. On the other hand, the highest percentage of frequency was 66.7%, which also recorded for the size class 40 - 50 mm.Laboratory experiments showed that the members of a species D.punctata able to tolerate saline concentrations between 2 - 6 psu the survival rate 100%, Also, these worms (D. punctata) feed by different ways, it can be considered Predatory Macrophagous and Scavengers, its food materials consist of invertebrate animals such as Oligochaetes, Lumbriculids, Chironomid larvae; fleshy body of some aquatic snails; and on dead fishes. In the laboratory, the leeches fed well on flesh and livers of chicken, sheeps and caws, The laboratory also studied, Three different types of food effect (chicken liver, zooplankton, and animal feed) on the growth of young leech for a period of six weeks.From the field and laboratory observations, the specie D. punctata reproduces sexually by cross fertilization. The male and female gonopores are easily observed in adults which ranging in length from 45 - 60 mm. as well as the sperm sacs on the mid ventral surface of the body during the reproduction season, which extend in our study during two periods : January - May and December 2015. The sexual reproduction processes were studded in detail and the embryonic development in cocoons was divided into five hypothetical stages according to morphological and anatomical changes and these stages are : - 1 - Depositing Cocoon Stage.2 - Primary Cleavage stage.3 - Development and extension.4 - Differentiation of regions stage.5 - Complement and release stage. The histological structure of the body wall, suckers, reproductive organs and digestive tract of adult leeches were investigated. The body wall consists of thick layers of circular, longitudinal and oblique muscles.The structures of the male reproductive system such as genital atrium, sperm sacs and testis were observed. There are two lateral blood sinuses around the mouth cavity in addition to many nerve cells. The posterior sucker is muscular, and the muscle cells are as a dense net in the peripheral part, while are as a loose cells in the middle what give it a sponge appearance, in addition to primitive glomerular cells, nerve cells and mucus cells

استخدام البكتريا المختزلة للنترات المعزولة من مياة انتاج حقول النفط في البصرة في السيطرة على الانتاج الحيوي لغاز كبريتيد الهيدروجين المنتج بفعل البكتريا المختزلة للكبريت == Using of Nitrate Reducing Bacteria Isolated From Produced Water of Oil Fields in Basra in Control of Biogenic Hydrogen Sulfide Produced by Sulfate Reducing Bacteria

Author name: وجدان حسين عبد الصاحب التميمي
Supervisor name: كوثر هواز مهدي
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: تضمنت الدراسة الحالية استخدام تقنية الاقصاء بالتنافس الحيوي للسيطرة على الانتاج الحيوي لغاز كبريتيد الهيدروجين H2S من قبل الجراثيم المختزلة للكبريت في مزارع الدفعة والمفاعل الحيوي, اذ ان اضافة النترات او النتريت يحفز نمو الجراثيم المختزلة للنترات التي تنافس الجراثيم المختزلة للكبريت على المصادر العضوية وتستقصيها. جمعت 40 عينة من مياه انتاج حقول نفط نهران عمر واللحيس في البصرة خلال 6 اشهر للفترة من اب 2013 الى كانون الثاني 2014, عزلت مزارع خليطه من الجراثيم المختزلة للكبريت والمختزلة للنترات من تلك العينات وحسبت اعداد الخلايا لكلا النوعين باستخدام طريقه العد الاكثر احتمالا وقد اظهرت النتائج ان اعداد الجراثيم كانت منخفضة اذ بلغت اعداد الجراثيم المختزلة للكبريت بين7 - 4 خلية/100مل في حين كانت اعداد الجراثيم المختزلة للنترات اقل من 4 - 2 خلية/ 100مل. كما تضمنت الدراسة الحالية ايضا تنقيه للجراثيم المختزلة للكبريت والمختزلة للنترات واجراء التشخيص الجيني بتقنيه التفاعل التسلسلي لانزيم البوليمريز PCR والذي من خلاله تم تضخيم الجين16S rRNA وحدد تتابعه للتشخيص الى مستوى السلالة وقد اظهرت تحاليل المجتمع الجرثومي ان عزلات الجراثيم المختزلة للنترات قد امتلكت تطابقا بنسبة 99% مع الانواع Pseudomonas stutzeri وP. putida وHerbaspirillum huttiense وBacillus licheniformis اما عزلات الجراثيم المختزلة للكبريت فقد اظهرت النتائج انها امتلكت تماثل 99% للانواعShewanella hafniensis وDesulfotomaculum acetooxidans وDesulfosporosinus orientis مع افتراض ان جميع العزلات هي سلالات جديدة عالميا. كما اظهرت نتائج المعاملة بالنترات او النتريت في مزارع الدفعة وجود تاثير مثبط قوي على الجراثيم المختزلة للكبريت اذ لم يزداد مستوى الكبريتيد في جميع التراكيز المستخدمة ( 200 و400 و600 و800 و1000) ملغم/لتر من النترات والنتريت فقد تراوح مستوى تركيز الكبريتيد بين 4.2 و21 ملغم/لتر عند المعاملة مع النترات و23 و5.2 ملغم/ لتر مع النتريت, وتطابقت هذه النتائج مع تركيز الخلايا في جميع القناني المعاملة, اذ تراوح بين 0.26 - 0.001 و0.003 - 0.17 مع النترات او النتريت على التوالي بينما كانت هناك زيادة معنوية في تركيز الكبريتيد الذي بلغ 121 ملغم/لتر وتركيز الخلايا بامتصاصية بلغت 0.84 في عينات السيطرة.كان للجراثيم المختزلة للنترات تاثير مثبط قوي على نمو الجراثيم المختزلة للكبريت وانتاج الكبريتيد عند اضافة المغذيات المشجعة لنموها بمختلف التراكيز, اذ ازدادت فعاليه الجراثيم المختزلة للنترات واستهلكت كل من النترات او النتريت المضاف خلال 3 - 2 يوم من الحضن وكان اعلى تاثير مثبط لانتاج غاز كبريتيد الهيدروجين عند التركيز 1000 ملغم/لتر من النترات اذ اظهرت النتائج وجود انخفاض معنوي في مستوى الكبريتيد الى34 ملغم/لتر في حين كانت اعداد البكتريا 34.8 خلية/مل بعد عشرة ايام من المعاملة. اظهرت نتائج معالجة الحموضة طويلة الامد باستخدام المفاعل الحيوي وجود انخفاض حاد في انتاج غاز كبريتيد الهيدروجين بنسبة 94% بعد اضافة النترات والنتريت خلال فترة 60 يوما من المعاملة ,الاضافة المستمرة للنترات والنتريت بحوالي ( 333ملغم/اليوم للنترات و133ملغم/اليوم للنتريت) ادت الى تثبيط الفعالية الحيوية للجراثيم المختزلة للكبريت وانتاج غاز كبريتيد الهيدروجين, اذ انخفض مستوى الكبريتيد من 155 الى 10 ملغم/لتر واعداد الخلايا اكبرمن 1100 الى 3.5 خلية/ مل بما يعادل 99.6% , بينما ازدادت فعالية واعداد الجراثيم المختزلة للنترات من 1100 الى اكبر من 1100 خلية/مل.اظهرت نتائج معدل تاكل عينات الحديد المطاوع في المفاعل الحيوي بعد 60 يوما ان اعلى معدل للتاكل كان 70.7 ملغم/ سم2/ سنه في المفاعل غير المعامل بالنترات والنتريت بينما انخفض معدل التاكل الى 15.8 ملغم/ سم2/ سنه بعد نفس الفترة من التعرض في المفاعل المعامل وبنسبة انخفاض بلغت 55% مقارنة مع المفاعل غير المعامل. | This study includes the used of Bio Competitive Exclusion technology (BCX) to control biogenic production of hydrogen sulfide (H2S) by Sulfate Reducing Bacteria (SRB) in batch cultures and bioreactors. The injection of nitrate (NO3) and nitrite (NO2) promotes the growth of nitrate reducing bacteria (NRB) which outcompete (SRB) on carbon sources. A total of 40 samples were collected from produced water of oil production facilities in Basra including Nahran Omer and Al - Lahis oil fields in a period time of 6 months from August 2013 to January 2014. Mix cultures of (SRB) and (NRB) were isolated from these samples, the two types of bacteria were enumerated by using most probable number method, the results show that the numbers of both bacteria were generally quite low, the viable count of (SRB) was between 4 - 7cell/100 ml whereas the (NRB) was between <2 - 4 cell/100 ml. This study also includes purification of isolates for both (SRB) and (NRB) and the genetic identification by polymerase chain reaction (PCR) technique through which the universal 16S rRNA gene of 1500 bp is amplified and sequenced for identification to the level of strains. Microbial community analysis showed that isolates of (NRB) were have identity of 99% Pseudomonas stutzeri, P. putida, Herbaspirillum huttiense and Bacillus licheniformis while isolates of (SRB) were have identity of 99% Shewanella hafniensis, Desulfosporosinus orientis and Desulfotomaculum acetooxidans with supposing that all isolates new world strains. The results of the treatment with nitrate or nitrite showed a strong inhibitory effect on (SRB) growth and (H2S) production, sulfide levels do not increase at all concentrations (200, 400, 600, 800 and 1000) mg/l of nitrate or nitrite range between 4.2 - 21 mg/l in treatment with nitrate and 5.2 - 23 mg/l in treatment with nitrite. This is consistent with the concentrations of bacteria in all treatment bottles which range between 0.001 - 0.26 and 0.003 - 0.17 in treatment with nitrate or nitrite respectively, while there is a significant increase in sulfide 121 mg/l and concentration of bacteria 0.84 in control as optical density. (NRB) has a certain inhibitory effect on the growth of (SRB) and (H2S) production when the (NRB) nutrient (nitrate or nitrite 200, 400, 600, 800 and 1000) mg/l were adding , the activity of (NRB) increases after treatment, and it consumed all nitrate or nitrite during 2 - 3 days of incubation, the strong inhibition of (H2S) production is at concentration 1000 mg/l of nitrate where the results showed that there was significant decrease in sulfide level 34 mg/l and number of bacteria, 34.8 cell/ml during 10 days of incubation.Souring control at long term treatment in bioreactors show sharp decrease in production of (H2S) to 94% after injection of nitrate and nitrite during the period of 60 days, the continuous dosing of nitrate and nitrite (333 mg/l/day nitrate and 133 mg/l/day nitrite) inhibited the metabolic activity of (SRB) and (H2S) production severely, the sulfide levels decrease from 155 to 10 mg/l and number of (SRB) from >1100 to 3.5 cell/ml the percent in number decreased was to 99.6%, at the same time activity and numbers of (NRB) increase from 1100 to >1100 cell/ml over the duration of experiment. The results of corrosion rate measurement on mild steel after 60 days showed that the highest corrosion rate was 70.7 mg/cm2/year in control reactor while the lowest corrosion rate was 15.8 mg/cm2/year in treated reactor at the same period time of exposure with percent of decreasing in weight loss to 55% comparing with control reactor.

دراسة تاثيرالتعرض السابق لمادة الايثيلين وايضه في بعض المعاييرالفسيولوجية : دراسة تاثيرالتعرض السابق لمادة الايثيلين وايضه في بعض المعاييرالفسيولوجية والوراثية عند العاملين في معمل البتروكيمياويات في محافظة البصرة والوراثية عند العاملين في معمل البتروكيمي == The Study of the effects of previous Ethylene Exposure on Some Physiological and Genetic Parameters in Workers of Petrochemical Plant In Basrah province

Author name: هبة ثاقب يسر
Supervisor name: سامي جبر المالكي | فائزة عبد الوهاب احمد
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The current study was conducted to investigate the genetic and physiological effects of some industrial chemicals on workers of the Petrochemicals Industrial Factory, in Basra Province , as it has been collecting 100 blood samples during the month of January and February of 2011 from each of the exposure in (ethylene section) and the control group of (employees of the University of Basra). and then the samples were divided on the basis of each of the years of occupational exposure to more and less than 15 years , age group to the larger and smaller than 50 years, smoking habits.The results showed that there was a significant decrease in the haemoglobin concentration HB, PCV, RDW and MCV in the more than15 years exposure group in comparison with the control group, while, no significance was detected in the RBC, MCH, MCV ,RDW,MCH and MCHC in less than15 years exposure group . Whereas, a significant decrease in the PCV for the same group was observed.White blood cells parameters’ results showed also variations in their values. In general, WBC did not change significantly in both groups of workers, while, the proportion of the lymphocyte and the of monocyte declined significantly in the more than 15 year of occupational exposure group, in contrast, the proportion of granulated cells increased markedly in the same group. The results of group of less than 15 years exposure revealed that the proportion of monocyte dropped significantly. Conversely, there was a significant increase in the proportion of granulated cells while the proportion of the lymphocyte was not significant . Platelets’ number and average of platelets’ volume decreased significantly in both occupational groupsTurning to the biochemical tests, the results showed significant increase in both liver enzymes ALT ,ASTand bili as well as this increase was found in urea, uric acid and glucose values in both occupational exposure groups. Contrariwise, the ALP creatinine and cholesterol did not reveal significant changes in both groups that in comparison with control group. The total protein decreased significantly in the group of more than 15 year of occupational exposure.Testosterone level revealed a significant decline in both occupational groups, while the Follicle stimulating hormone showed a significant increase in the occupational group of less than 15 year and no difference was observed in another occupational group while LH hormone level was not significant.In case of the genetic effects of the ethylene compounds, DNA was extracted for control and occupational groups and amplification was performed for GSTM1, GSTT1 and Albumin by using PCR technique. The results showed that there was no significant effect of both occupational periods on the GSTM1 gene, while GSTT1 gene was significantly in the workers samples in group more than 15 year of exposure, which was 2.43 times more than the group of less than 15 year of exposure.As regards the impact of exposure to ethylene and loss of genes GSTM1 and GSTT1 showed the results of our study, significant increase in the loss of gene GSTM1 amounted to more than five - fold (5.1) among workers exposed compared to a set of control while the proportion of loss of gene GSTT1 by more than three - fold (3. 1) compared to the group control has been a loss ratio of the two genes together more than eight - fold (8.5) for workers exposed group compared to the control.The light smoke did not reveal a significant effect on the null of GSTM1 and GSTT1 genes that in comparison with the control group, while the study found a significant effect of smoking on gene GSTM1, causing the null of much more than doubled (2.2) times compared with the control group (non - smokers) and the significant effect of smoking on null GSTT1 gene loss as increased visits by the text (1.5) compared with non - smokers also appeared that excessive smoking has an effect on the GSTT1 gene causing loss by seven - fold (7.08) once compared to non - smokers.The effect of the age group (less and more than 50 years old) of the workers on the null of both GSTM1 and GSTT1 was also examined. GSTM1 gene was null six times in both age groups of workers more than the control samples. While the GSTT1 was null in age group less than 50 years old three times more than the control group. As well as this absence was two times in the age group more than 50 years old in comparison with control group.It could be concluded from the present study that the exposure of workers to ethylene and its metabolic impact and clearly on blood standards as well as caused a high level of enzymes AST, ALT and bilirubin and high blood sugar levels and lower total protein and high level of urea and uric acid level as well as the low level of the hormone testosterone as it turns out that occupational exposure to ethylene and metabolic outcomes and length of exposure and smoking for workers exposed role in influencing the genes of detoxification, causing null in each of the gene GSTT1 and GSTM1.

دراسات تصنيفية وحياتية ووبائية للمثقوبات المتطفلة في الجهاز التنفسي للطيور المائية في اهوار محافظة ذي قار == Taxonomic,Biological and Epidemiological Studies of Trematodes Parasitic in the Respiratory System of Some Aquatic Birds in Marshes of Thi - Qar province/Iraq

Author name: نثيلة رشيد حميد الكسار
Supervisor name: صبيح هليل المياح | باسم هاشم عبد الله
General topic: Biology
Specific topic: Microbiology - Parasites
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: A total of 420 aquatic birds belonging to four species( Chettusia leucura , Himantopus himantopus, Gallinula chloropus and Fulica atrawere collected in the current study during the period between December 2012 to November 2013 fisolated from Al - Chibayish marshes , eastern of Thi Qar province. Digenetic trematode, Haematotrephus nittanyense was isolated from H. himantopus and C. leucura. Prevalence in those birds were 20.7% , 2.2% respectively. Mean intensity of infection 1.7 , 1.2 respectively. Digenetic trematode , Haematotrephus chengi was found in C.leucura, the Prevalence of infection was 20.7% . These two trematodes were recorded for the first time in Iraqi birds . 2.6% of Ch. leucura were infected with Digenetic trematode , Uvitellina iraquensi , mean intensity of infection was 2.7 . Digenetic trematode , Cyclocoelum mutabile Cyclocoelum mutabile was isolated from F. atra and G. chloropus birds . Prevalence in those birds were 21.2% ,10% respectively. Mean intensity of infection 3 , 3 . Digenetic trematode , Cyclocoelum microstomum was found in 20% of G. chloropus birds and in 15% of F. atra , mean intensity of infection 2.8 , 1.8 respectively.The current study revealed that , most eggs of H. nittanyense , H. chengi and U. iraquensis hatch within the uteri of worms while embryonated eggs of C. mutabile and C. microstomum shed from mature worms hatch within few hours after being placed in water. The mean number of eggs differed between species. Hatching of C. mutabile and C. microstomum eggs did not occur at 12°C . Egg hatching rate of C. mutabile differed from eggs hatching rate of C. microstomum at all temperatures . Temperatures, salinity and acidification of water affectedthe rate of hatching of C. mutabile and C. microstomum eggs , and the results varied between two different species . Storing eggs of C. mutabile and C. microstomum at (0,4)°C for ( 1 - 8) weeks failed to hatch . Storing eggs of C. mutabile and C. microstomum at (7,10,12)°C for (1 - 8) weeks had no effect on hatching success or on eggs hatching rate.A biological study of the miracidia of trematodes which were isolated in the current study showed that , the survivorship and longevity of miracidia were differed among the different species . Temperature, salinity and acidification of water affected the survivorship and longevity of miracidia . Storing eggs of all species at (7,10,12)°C for eight weeks had no effect on survivorship and longevity of their miracidia. The study revealed that , the miracidia of all species were infective to Radix auricularia and Physa acuta snails , but R. auricularia snails more sensitive to infection . The infectivity of the miracidia of all species to R. auricularia and P. acuta snails varied according to the species of these trematodes . Infection rate of R. auricularia snails with the miracidia of all species , mean intensity of infection and the metacercariae output varied according to species of these trematodes, temperature , miracidial density as well as size of snails. Miracidia hatching from eggs stored for 1 - 8 weeks at 7°C not differed in their infectivity to snail. The miracidia of all species hatching from eggs stored for (0 - 8) weeks at 7°C differed in their infectivity to snail according to the species of these trematodes. Age and density of H. chengi miracidia affected the infection rate of R. auricularia snails as well as affected the mean intensity of infection . H. chengi infection had no effect on mortality rate of R. auricularia and P. acuta snails.The results showed that there were differences between the various stages included in the life cycle of the five species of Cyclocoelidae family isolated in the current study . The time required for production and development of these stages varied according to their species, as well as these larval stages were differed among the species in their shapes , sizes and in the product number of them .The current study revealed that , metacercariae of the trematodes which were isolated in the current study fed separately to Gallus domesticus and Anas platyrhynchos failed to produce an infection , although the influence of C. leucura bile on metacercariae of H. nittanyense , H. chengi and U. iraquensis varied according to the species of these trematodes but bile of C. leucura plays a role in increasing excysted juveniles ratios , reduction the time required for excysting and increasing the time of juveniles activity compared with a bile of G. domesticus .In the current study. H. nittanyense showed a clear seasonal cycle of infection in local aquatic birds , H. himantopus ,while the study exposed a clear seasonal cycle of H. chengi infection in local aquatic birds C. leucura . Isolation of U. iraquensis in different periods during the current study from local aquatic birds, C. leucura may refer to its ability to complete its life cycle in a study area. Isolation of C. mutabile from migratory bird at arrival time to the study area may refer to new infections that carried by these migratory birds from their breeding grounds . Abundance of sensitive snails and suitable temperatures in a study area at arrival time of these birds may help this trematode to complete its life cycle in this area thus new infections emerged later and these infections may carry by microstomum isolated from migratory birds only at the arrival time to the study area may refer to new infections that carried by these migratory birds from their breeding grounds as well as this may indicate an inability to complete the life cycle of this trematode in this area.

تاثير بعض المعاملات في زيادة تحمل نبات الموز (Musa acuminata L.) الصنف الهندي للشدين الملحي والمائي باستعمال تقانة زراعة الانسجة النباتية == Effect of some treatments on increasing salinity and water stress on Musa acuminata L. (Hindi cultivar) using plant Tissue Culture techniques

Author name: مريم جاسم محمد
Supervisor name: حسين خلف زاير | عباس مهدي جاسم
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: اجريت الدراسة الحالية في المختبر التقني لزراعة الانسجة النباتية التابع للقطاع الخاص الواقع في منطقة الفيحاء / قضاء شط العرب/ محافظة البصرة للفترة من 2012/12/20 ولغاية 2014/12/20 على نبات الموز الصنف الهندي قصير الساق Musa acuminata L. بهدف وضع برنامج للاكثار الدقيق ومدى تحمل النبيتات للشد الملحي باستعمال كلوريد الصوديوم والشد المائي باستعمال مركب الكلايكول متعدد الاثيلين (PEG)Polyethelen glycol ومعرفة تاثير معوق النمو الباكلوبيوترازول (PBZ)Paclobutrazol في تضاعف الافرع الخضرية وفي اقلمة النبيتات وتاثير الهرمون النباتي حامض الابسيسك (ABA)Abscisic acid في تحسين التحمل للشدين الملحي والمائي. استعمل انصاف من القمم المرستيمية النامية Shoot tips كاجزاء نباتيةExplants على وسط MS مضافا اليه 5ملغم.لتر1 - من السايتوكاينين (BA)Benzyl adenine لتحفيز تضاعف الافرع الخضرية ومعاملتها بتراكيز مختلفة من ملح كلوريد الصوديوم وPEG وPBZ وABA وتم حساب عدد الافرع الخضرية الناتجة وقطرها وارتفاعها وعدد الجذور واطوالها ومتابعة نموها ثم اجراء عملية الزراعة الثانوية لعدة مرات ثم اقلمتها ونقلها الى البيت البلاستيكي.ويمكن تلخيص النتائج التي تم الحصول عليها بما يلي : 1 - اضافة ملح كلوريد الصوديوم بالتراكيز 0 او 20او50 او80 او120 ملي مولر الى الوسط MS اثر في تضاعف الافرع بنسب متفاوتة , وادى الى زيادة معنوية في المدة اللازمة لظهور الافرع الخضرية وتقليل عددها بزيادة تركيز الملح .2 - اضافة معوق النمو PBZ بالتراكيز 0 او0.5 او 1 او1.5 او2 ملغم.لتر1 - بوجود السايتوكاينين BA بالتركيز 5ملغم.لتر1 - ادى الى تقليل المدة اللازمة لبدء ظهور الافرع الخضرية وزيادة عددها وخفض ارتفاع النبات وعدد الجذور بزيادة تركيز PBZ.3 - تفوقت المعاملة الاولية بـPEG بالتركيز 1% معنويا على التركيز 0.5% في عدد الافرع الخضرية وفي عدد الجذور وطولها وزيادة في ارتفاع النبات وقطره .4 - اضافةABA الى الوسط الغذائي بالتركيزين 0.1 او0.3 ملغم.لتر1 - ادت الى تقليل عدد الجذور واطوالها وارتفاع النبات وقطره وتيبس الاوراق واصفرارها مقارنة مع معاملة السيطرة بينما تفوقت معاملة التداخل مع تراكيز كلوريد الصوديوم المدروسة مع المعاملتين 20و50 ملي مولر من كلوريد الصوديوم تفوقا معنويا على المعاملتين 80 و120 ملي مولر في زيادة عدد الجذور واطوالها وطول النبات وقطره . 5 - سببت اضافة كلوريد الصوديوم الى الوسط الغذائي زيادة معنوية في تركيزي ايوني الصوديوم والكلورايد وهبوط معنوي في تركيز ايون البوتاسيوم ونسبة البوتاسيوم /الصوديوم بينما ادت اضافة PBZ وPEG وABA الى انخفاض معنوي في ايون الكلورايد وزيادة معنوية في نسبة البوتاسيوم /الصوديوم .6 - سببت المعاملة بملح كلوريد الصوديوم زيادة معنوية في محتوى الاوراق من البرولين بزيادة تركيز الملح .كما ان تداخل تراكيز ملح كلوريد الصوديوم مع PBZ وPEG وABAقد سجلت زيادة معنوية في محتوى البرولين بزيادة تركيز الملح . 7 - ادت المعاملة بملح كلوريد الصوديوم عند التركيزين 20و50 ملي مولر زيادة محتوى الاوراق من الكربوهيدرات الذائبة الكلية في حين ادت المعاملة بالتركيزين و80 و120 ملي مولر الى هبوطها.اما بالنسبة لتداخل تراكيز ملح كلوريد الصوديوم مع تراكيز PBZ وPEG وABA فقد تفوقت معنويا في محتوى الاوراق من الكربوهيدرات عند جميع التراكيز مقارنة مع معاملة السيطرة .8 - اوضحت النتائج ان محتوى الاوراق من الكلوروفيل الكلي قد انخفض معنويا عند تركيزي80 او120 ملي مولر كلوريد الصوديوم .كما ان المعاملة بـ PBZ وPEG وABA ادت الى زيادة محتوى الكلوروفيل الكلي عند جميع التراكيز .9 - اقلمت النبيتات الناتجة من الافرع الخضرية المزروعة في الوسط الغذائي المزود بتراكيز ملح كلوريد الصوديوم فقط ومن تداخل كلوريد الصوديوم مع تراكيز PBZ وPEG وABA وقيس ارتفاع النبات وقطره وقورنت مع معاملة السيطرة .10 - ادت المعاملة بتراكيز PBZ وPEG وABA المتداخلة مع تركيزي ملح كلوريد الصوديوم 20 و50 ملي مولر الى خفض معدل النسبة المئوية للرطوبة المفقودة وزيادة النسبة المئوية للنباتات المؤقلمة.11 - اضافة كلوريد الصوديوم الى الوسط الغذائي ادى الى حدوث تغيرات في عملية التعبير الجيني وظهور اختلافات في عدد ومواقع وكثافة الحزم البروتينية .12 - التداخل بين كلوريد الصوديوم والمواد المضافة PBZ وPEG وABA ادت الى اختفاء بعض الحزم وظهور حزم اخرى في مواقع مختلفة خصوصا الحزمتين 3و 4 . | This study was conducted in the laboratory of the technical plant tissue culture in Fayhaa / Shatt Al - Arab District / province of Basra for the period from 12/20/2012 till 20/12/2014 at Dwarf banana cv. Indian Musa acuminata L. In order to develop a program for micropropagation and were to investigate salt stress tolerance through the effect of NaCl, and water stress through Polyethelen glycol(PEG) and knowledge of the growth retardant of Paclobutrazol (PBZ) in multiplication of the branches vegetative and acclimatization and the effect of Abscisic acid(ABA) on improving salt and water stress tolerance. Halves of shoot tips were used explants which were cultured on MS medium supplied 5 m.l - 1 of Benzyl adenine (BA) to stimulate the multiplication of the branches vegetative and treated with different concentrations of sodium chloride and PEG and salt PBZ and ABA were calculating the number of branches vegetative resulting in diameter and height and number roots and length of follow - up and growth of agriculture and then conduct subculture for several times and then acclimatized and transferred to the plastic house.The results of this study can be summarized as follows : 1 - The addition of 0 or 20 or 50 or 80 or 120 mM of sodium chloride to the MS medium affected the multiplication of the branches vegetative in various percentages. This, in turn, resulted in a signficant increase in the required time to initiate the adventitious buds and lowered their number. There was also a significant difference in the percentage of increasing the numbers of those branches by increasing the salt concentrations. 2 - The addition of the concentrations 0 or 0.5 or 1 or 1.5 and 2 mg.l - 1 of growth retardant PBZ together with 5 mg.l - 1 BA resulted in lowering the required time for initiating the adventitious buds, increasing their number, decreased the number of roots and height of stem by increasing the concentration of PBZ.3 - The initial treatment by 1% PEG significantly increased than the concentration 0.5%. This increase included the number of the adventitious buds, number and length of roots, as well as height and diameter of stem.4 - The addition of 0.1 and 0.3 mg.l - 1 ABA to the nutrient medium led to lower th number and length of roots, stem height and diameter. The leaves became dry and yellow when compared to the control treatment. As far as the interactions between the sodium chloride concentrations in question are concerned, the two concentrations 20 and 50 mM showed a more significant difference than the other concentrations 80 and 120 mM in the number and length of roots, and stem length and height.5 - The addition of the sodium chloride to the nutrient medium resulted in a significat increase in the concentrations of sodium chloride ions and a significant decrease of potassium/ sodium percentage. The addition of PBZ, PEG, and ABA resulted in a significant decrease in chloride ion and a significant increase in potassium/ sodium percentage.6 - The sodium chloride treatment caused a significant increase in the leave content of Proline by incresing the salt. The interaction between sodium chloride salt concentrations and PBZ, PEG, and ABA showed a significant increase in the proline content by increasing salt concentration.7 - The treatment by the two concentrations 20 and 50 mM sodium chloride resulted in increasing the leave content of the total soluble carbohydrates, whereas the treatment by the two concentrations 80 and 120 Mm lowered the leave content. Considering the interaction between sodium chloride and PBZ, PEG and ABA, the interaction showed a significant increase in the leave content of carbohydrates at all concentrations compared to the control treatment.8 - The results showed that the leave content of chlorophyl increased significantly at the two concentrations 20 and 50 mM sodium chloride. Also, the treatment by PBZ, PEG, and ABA showed an increase in the chlorophyl content at all concentrations.9 - The resulted plantlets were acclimatized by sodium chloride salt concentrations and by the interaction of Sodium Chloride and PBZ, PEG, and ABA. The plant height and stem diameter were measured and compared to the control treatment.10 - The treatment by PBZ, PEG, and ABA concentrations that are interacted with Sodium Chloride salt concentrations at 20 and 50 mM led to lower the average percentage of lost moisture and increase the percentage of the success of acclimatization. 11 - Add Sodium chloride to the media has led to changes in the process of gene expression and the emergence of differences in the number and location and intensity of the protein packets.12 - The interaction between the sodium chloride and additives PBZ and PEG and ABA led to the disappearance of some packages and the emergence of other packages in different locations, especially packages 3 and 4.

السيطرة الاحيائية واللااحيائية على نمو الفطر Aspergillus flavus والتعبير الجيني للجينين aflDو aflR وانتاج الافلاتوكسين B1 == Biotic and Abiotic Control on Aspergillus flavus Growth, aflD and aflR Expression and Aflatoxin B1 Production

Author name: لبيد عبد الله نجم السعد
Supervisor name: عدنان عيسى البدران | سامي عبد الرضا الجميلي
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: Fifteen isolates of Aspergillus flavus (AFL1 - AFL15) were isolated from multiple sources included soil, compost, seeds, fruits, feed and air. The isolates were identified morphologically then confirmed by molecular techniques. Only thirteen isolates were confirmed positively (AFL1 - AFL5 and AFL8 - AFL15) while two of them were not. A phylogenetic analysis was made which revealed that the isolates grouped according to their source of isolation. The aflR profile and phenotypic AFB1 production confirmed that all thirteen isolates posses the ability to produce AFB1 with significant differences (P ≤ 0.05) among them. Growth rate profile was performed under 30ºC which showed significant differences (P ≤ 0.05) among isolates. According to the above tests, A.flavus AFL14 was selected to be the experimental isolate for the rest of experiments in this study. Comparing to A.flavus NRRL3357 type strain, the impact of temperature, water activity aw and isolate factors was examined to determine the limits and optimum ecological conditions of growth of A.flavus AFL14. The results displayed that the best growth rate was (7.217 mm/day) at 0.98 aw where the lowest was (4.069 mm/day) at 0.9 aw with no growth at 0.85 aw while the impact of temperature demonstrated by outweigh of growth rate at 35ºC (6.201 mm/day) followed by 30ºC (5.272 mm/day) which exceeded 25ºC and 40ºC (4.604 and 4.051 mm/day), respectively.Bacillus subtilis (isolates : BSS1, BSS2, BSS3, BSS4 and BSW) and Pseudomonas fluorescens (isolates : PFMst and PFDL) were elected to be used as biocontrol agents. All the isolates were passed the biochemical identification tests moreover, BSS4 and BSW isolates of B.subtilis and PFMst and PFDL isolates of P.fluorescens were confirmed molecularly which used later in all biocontrol experiments in this study. The ability ofbiocontrol agents to inhibit fungal growth was investigated and the resultsshowed significant inhibition impact represented by significant outweighof B. subtilis BSS4 (99%) on the rest of B. subtilis isolates followed by P.fluorescense PFDL and PFMst (92.29 and 86.19) %, respectively, with nosignificant differences (P ≤ 0.05) among them. The extra - cellular abilityof biocontrol agents to degrade AFB1 showed a high degradation abilityIpreformed by B. subtilis BSS4, BSW isolates and P. fluorescence PFMst,PFDL isolates (100, 100, 97.805 and 97.396%), respectively. Thedegradation residues administrated to rats to determine their effect onbiosystems, the blood parameters showed a significant reduction ofWBC, HB, RBC, and P.C.V while there was a significant increase inUrea, Glutamic pyruvate transaminase (GPT) Glutamic oxaloacetictransaminase (GOT) and MCV in AF+DMSO treatment comparing tothe negative and positive control. Water activity and biocontrol factorswere examined to control aflD and aflR expression and phenotypic AFB1production. When the experiment held using Nutrient Agar medium, asignificant inhibition of aflD and aflR expression (P=0.000 and 0.003),respectively performed by BSW at 0.94 aw comparing to 0.98 aw whileno significant inhibition was observed in the rest of the treatments. Allbiocontrol agents revealed high significant reduction of aflD and aflRexpression (P≤0.001) in each water activity level separately whichconfirmed by HPLC results. The phenotypic results showed that 0.94 awexceeded 0.98 aw in AFB1 reduction (2011 and 4280 ng/gm),respectively which agreed with gene expression results. When MaizeMeal Agar used as a medium, aflD expression presented a highsignificant increase at 0.98 aw relating to the NM level of each individualtreatment (P= 0.000 - 0.03) except PFDL+AFL14 which showed nosignificant aflD expression between both levels. aflR expression revealeda high significant reduction (P= 0. 000) caused by 0.98 PFDL+AFL14and 0.98 BSW+AFL14, respectively, while no significant differenceswere observed in the rest of the treatments or control. The HPLC resultsdisplayed a high significant reduction of AFB1 at 0.98 aw (8447 ng/gm)compared to (219000 ng/gm) at NM aw. The biocontrol agents caused ahigh significant reduction for both aflD and aflR expression (P=0. 000 - 0.043) under each individual water activity level while, HPLC resultsshowed non significant low reduction to the AFB1 performed by BSS4and BSW (25160 and 44790 ng/gm), respectively, followed by asignificant increase in AFB1 amount caused by PFMst and PFDL(267600 and 184100 ng/gm), respectively

دراسة بيئية لبعض العناصر الثقيلة في مياه نهر الفرات عند مدينة الناصرية وقابلية مراكمتها من قبل بعض الطحالب الخضر المزرقة ونبات الشمبلان مختبريا == Ecological Study of Some Heavy Metals on The Euphrates river Water at Nassiriyah City and The Ability of Accumulation by Some Blue green Algae and Ceratophyllum demersum L. in the Laboratory

Author name: عبد الوهاب ريسان عيال العبادي
Supervisor name: احمد محسن عذبي | اقبال جاسم الاسدي
General topic: Biology
Specific topic: plant - aquatic life
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The diversity of phytoplankton were studied and some physical and chemical environmental factors are (Temperature of air and water , pH , electrical conductivity , salinity , dissolved oxygen , alkalinity , hardness and nutrients) of four locations on Euphrates river water at Nassiriyah city in Thi Qar governorate . The first location lies north - west of Nassiriyah city at Al - Sharif region , whereas the second location lies in Al - Mustafaweia region , and the third location lies in Al - Majzarah region , and finally the fourth location lies in Al - Fadlyia city . Samples of water were collected from January to December of the same year of 2014 .The concentrations of some heavy metals are (lead , cobalt and cadmium ) were estimated , in addition to limitation of the efficiency of some algal species and Ceratophyllum demersum L. in bioremediation of their elements on the river water and a limitation of the accumulation sites of the heavy metals on the cells of the algal and plant by using the scanning electron microscope - x - ray . The results revealed clearly a variation on monthly , quarterly and locations of the number properties of the physical and chemical that were studied , the temperature of water ranged between 11.5cہ - 43.6c ہ and air ranged between 15.5cہ - 44.9 cہ , the high temperature at the second location was recorded .The high value of pH 8.62 in the forth locations at April was recorded and the low 7.2 in the third location at July . The concentrations of electrical conductivity were ranged between 3308 - 5773 μs / cm , whereas the concentrations of salinity ranged between 2.11 - 3.69 gm / l , the high concentration on the third location at February was recorded , and the low on the first location at April was recorded , while the concentrations of the dissolved oxygen ranged between 5.40 - 11.70 mg / l , the high concentration on the first location at February was recorded , whereas the low concentration on the third location at August was recorded , also the alkalinity concentrations ranged between 13 - 250 mg / l , the high concentration on the fourth location at March and the low concentration on the third location at July was recorded . From the results , it was show that , the river water was hardship , the hardness concentrations ranged between 850 - 1610 mg / l , the high concentrationaon the third location at January , and the low on the second location at May was recorded .While the concentrations of the nutrients , as nitrate and phosphate , the nitrate concentrations ranged between 13.6 - 41.5 mg / l , the high concentration on the third location at February and the low concentration on the first location at July , whereas the phosphates concentration ranged between 0.83 - 1092 mg / l , the high concentration on the third location on first location at April.Also the diversity of phytoplankton had been studied that were present in water of the river, There were diagnosis 198 species distributed between six classes , the dominance to the Bacillariophyceae as 90 species which belonged to 19 genus were recorded and at the percentage 45.45% of the total numbers of species recorded , followed by the Chlorophyceae 46 species which belonged to 25 genus and at the percentage 23.23% of the total species were that were recorded , followed by Cyanophyceae algae 46 species which were belonged to 15 genus and at the percentage 23.23% and algae of the Euglenophyceae had eight species which were belonged to three genus record and at the percentage 4.04% , with regard to the algae of Xanthophyceae had recorded five types at there belonged to three genus and at the percentage 2.52% and finally the algae of Chrysophyceae which was recorded three types belonged to the same genus , which collectively represent the percentage 1.51% .The study also experienced a record for species of phytoplankton at the first time in Iraq , which were five belonged to four classes , one of them was belonged to Chlorophyceae algae (Trochiscia granulate Prescott.) and the others to the Euglenophyceae(Phacus pyrum (Ehrenb.) Stein and Trachelomonas simillis Stokes) and one species for Chrysophyceae(Mallomonas elliptica (Kisselew) Conrad)and Xanthophyceae algae (Peroniella planctonica G.M.Smith).The concentration of some heavy metals (lead , cobalt and cadmium) in water of the locations was studied by using the flame atomic absorption spectrophotometer , the results were showing that , the concentrations of lead ranged between 4.58 - 29.0 μg / l , as record the high concentration on third location at August and the low on the first location at December , while the concentrations of cobalt were ranged between 4.60 - 23.0 μg / l , as record low concentration was on the first location at December ,bwhile the high concentration on the third location at August , cadmium concentrations ranged between 0.84 - 14.63 μg / l , the low concentration 0.84 μg / l recorded in the first location at December , while the high concentration 14.63 μg/ l in the third location at June .The study included too . a laboratory experiments to demonstrates the efficiency of some species of algae and Ceratophyllum demersum L. on the bioremediation of pollutants in the river water . The results indicates that , there was an increase on the percentage of the removal of elements with the increasing concentrations of elements that were added to water aquarium , reaching the low percentage of biological remove of the lead 95.2% at the treatment 50 mg / l and at the time period 10 days , whereas the biological remove of the high percentage 99.2% at the same treatment during the time period 40 days.As for the cobalt element , the results showing that , there were a gradual increases of the proportion of the removal with the increasing concentrations of cobalt that were added to the water aquarium , and reached to 94.2% at the treatment 50 mg / l at the time period 10 days , whereas the percent for the removal 98.56% at the time period 40 days at the same treatment , whereas the percentage of the vital removing of the element cadmium by the water plant Ceratophyllum demersum was increases in removing from the water aquarium that was 92.6% at the treatment 50 mg / l at the time period 10days , whereas it was 97.40% at the same treatment .As for the algae it had been isolated and diagnoses , the were four species of , blue - greens (Microcystis aeruginosa Kütz. , Nostoc linckia(Roth) Bornet and Thuret , Oscillatoria amoena(ktz.) Gomont and Hapalosiphon aureus West and West , samples were collected from the Euphrates river water on the studied locations . It was purified and propagation of these species on the laboratory for a single culture cell , unialgal culture and axenic culture to test their ability to remove and accumulation of the heavy metals from water. These species of algae were treated salt solution of heavy metals are lead , cobalt and cadmium both in privates and at different concentrations 0.10 , 0.25 , 0.50 , 1.00 and 2.00 mg / l for a period of two weeks . H.aureus was accumulated more of lead 1.724 μg / gm at the treatment 2.00 mg / l , followed by O.amoena which accumulated 1.638 μg / gm and N.linckia accumulatedc1.621 μg / gm and finally M.aeruginosa accumulated 1.579 μg / gm at the same treatment , but when adding the salt solution of cobalt nitrate , the alga O.amoena was accumulated more of cobalt element 1.726 μg / gm at the treatment is 2.00 mg / l , followed by H.aureus as accumulated 1.638 μg / gm , and was N.linckia accumulated 1.535 μg / gm , followed by M.aeruginosa 1.428 μg / gm at the same treatment . When are using the solution of the salt cadmium acetate , the N.linckia was accumulated more of cadmium 1.08 μg / gm , followed by H.aureus which was accumulated 0.63 μg / gm and finally O.amoena accumulated the percentage was reached 0.59 μg / gm at the same treatment .The study was included too the a limitation sites and accumulation of heavy metals within the plant cells and algae that were studied by using technology of scanning electron microscope - x - ray and the use of reagent X - ray EDX with SE2 .The results were showing that , The locations which accumulated heavy elements was in the cytoplasm of the cell . On the above of the foregoing the Ceratophyllum demersum L. showing high efficiency of accumulation of heavy elements inside the cells as compared with the studied algae , the efficiency and ability to increase of the accumulation increases by added of elements and by the increases period of exposure , also algae were revealed a capabilit

دراسة الطفرات الوراثية في جيني TPO وTSHR في محافظة البصرة

Author name: فله عبد الستار
Supervisor name: فائزة عبد الوهاب احمد | اسعد يحيى عايد
General topic: Biology
Specific topic: Plant - Genetics
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: Considered the thyroid glands task Deaf which produces important hormones are Tri iodothyrosine T3 and Thyroxin T4 and is responsible for their production a number of genes that encode the enzymes and proteins and the occurrence of any defect in this gene lead to the emergence of disorders of the thyroid work, including the case of palaces and fragments in hyperthyroid through the emergence of different pathological symptoms that indicate the occurrence of one of the cases studied in this research gland disorders at the level of molecular genetics .The study included only females were collected blood samples from 70 patients divided into 35 blood samples of the state of palaces and 35 blood samples for the case of the bulk in hyperthyroid deaf and diabetes endocrine centers of hospitals and ports Fayhaa year and Qurna, as well as from laboratory d. Nizar Mahfouz and represented a group of patients and 20 blood samples from healthy people represented as a set of control and that during the period from April to September 2013. But has been working on a sample of 70 patients (35 blood samples by the state of palaces and 35 blood samples for the case of the bulk gland) to add to the 20 blood samples of control and ages of the two groups and the healthy range (12 - 60 years).DNA was extracted DNA of two and three encoded amplified regions (8, 9 and 14) for the TPO gene and encoded region tenth TSHR gene PCR technology after it was diagnosed and analysis of mutations using the method for Sequences .The results showed the presence of two types of changes in the TPO and TSHR genes , two polymorphism (SNP) and Mutation, in gene156TPO study found hereditary forms c.1117G> T, A372S and c.1194G> C, S398T in the two groups of patients and healthy and not they relate to the occurrence patients palaces gland activity, as the study diagnosed 12 Novel Mutation in exon 8 in 21 patients hypothyroidism as compared to control (who did not appear to have any kind of mutations diagnosed) and that all mutations diagnosed are mutations bitmap compensatory (substitution) the type of guarantee or Transtion Transversion depending on the nature of the base mutant, five of the mutations are Missense Mutation in 11 infected condition limitations are as follows c.949A>G,M317V , c.1064G>A,R355H, c.1277C>G,A425G , c.1063C>A,R355S and c.1207C>A,L402M and seven silent mutation in 10 patients hypothyroidism c.1062G>A,A354A , c.1050C>A,L350L , c.843C>A,A281A , c.1101G>A,V367V, c.1143C>T,I381I , c.1071G>A,R357R and c.2406C>T,D802D , While the results did not show any difference in the analysis of the genetic sequence of the two exons 9 and 14 at comparable with the genetic sequence of the control group. In this study suggests that there may be a correlation between the occurrence of mutations in a gene TPO and the state hypothyroidism . The results of the current study showed that the gene TSHR has an impact in both cases, and shortcomings in fragments in the activity of the gland where the study found three types of polymorphism (SNP) of the two of them Non - Synonymous type c.2181G> C, E727D and c.1489G> C, A496P and shape The last of the silent type genetic c.1377G> A, A459A, as the results showed that the two forms hereditary c.2181G> C and c.1489G> A have no correlation to happen disorders and are globally registered the shape genetic c.1489G> C, A496P did not score previously has current study for the first time and may have a link to happen one of the disorders depending on the genetic predisposition of the individual . I found the157current study, seven Novel Mutation in exon 10 distributed to five mutations among patients hypothyroidism as compared to control (who did not appear to have any kind of mutations diagnosed) and that all the mutations diagnosed are mutations bitmap compensatory (substitutive Substitution) to ensure the kind of Transtion or Transversion depending on the nature of the base mutant 'three mutations are Missense Mutation in 3 people with the status of the palaces and the proportion of each mutation them (20%) are as follows c.1330 T>C , Y444H ; c.1424 T>C ,L475P and c.1435 T>C , S479P and two silent mutation in patients hypothyriodism c.1338 G>A, L446L and c.2300 G>A , Untranscrib , While the results recorded and there is only Tafrtin in the case of the bulk in hyperthyroid by (5.71%), one Missense mutation (c.1832 C> A, P610Q) and the other is silent (Silent) (c.2103 C> A, R701R). The present study indicated that the probability of the occurrence of the disease mutations link through the site mutations in specific areas to link hormone catalyst and the interaction between the Receptor and the unity of secondary alpha (G - protein). Results of the current study also showed that mutations identical and disparate factors have an impact on events in the case of deficiencies, genetic gland activity in the TPO and TSHR through defect events and constructed partially or wholly in the function of the protein encoded by genes TPO and TSHR

عزل وتشخيص مركب ايضي ثانوي جديد لكل من الفطرين Fusarium Trichoderma harzianum وsolani المعزولين من السواحل الرسوبية في محافظة البصرة وتقييم فعاليتهما الحياتية == Isolation and Identification of Novel Metabolic Compound From Both Fusarium solani and Trichoderma harzianum Isolated From Sedimentary Coast of Al - Basrah City and Estimate their Activity

Author name: فردوس نوري جعفر
Supervisor name: محمد لطيف علي | نيران جاسم الصالحي
General topic: Biology
Specific topic: Microbiology - Fungi
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: with the interest of medical and pharmaceutical uses of the natural products from marine fungi , thirty species of fungi belong to ninteen genus were isolated and identified from sea coast sediment of Al - Faw and Al - Seeba .The fungi Acremonium strictium , Geotricum candidum, Fusarium solani ,F.oxysporum , Penicilium sp. ,Trichoderma harzianum exhibited high inhibition activity toward growth of two reference strains of bacteria Escherichia coli (ATCC25922) and Staphylococcus aureus (NCtC 6571). The six selected fungi were grown in liquid culture media PDB at 25°C for two weeks ethyl acetate was used to extract the active compounds from thefermentation liquid media while ethanol was used to extract the active compounds from fungal mycelia .The crud extracts (fermentation and mycelium ) showed different inhibition activity against the pathogenic bacteria , Proteus mirabilis , S. aureus, isolates E. coli, Pseudomonas aeruginosa Klebsella pneumoniae. and pathoginic yeastes Candida albicans, C.tropicals,Cryptococcus neoformans and dermatophytic fungi Trichophyton verrucosum and Microsporium canis . The results revealed that the fermental fungi extracts has more inhibition activity than mycelial fungal extracts.The minimal inhibitory concentration (MIC) of fungal crude extracts were determined against gram positive and gram negative bacteria and pathogenic yeasts and fungi . antagonisum between studied fungi were evaluated , and the fungus T.harzianum has been the more antagonistic effect against other fungi. The toxicity of the fungal crude extracts were tested by using of human RBC at different concentration the result of this experiment showed that all extracts are non toxic except F.oxysporum extract.From all the above results the both F.solni and T.harzianum extracts showed higher activities ,thus these two extracts chosen for further studies. The anticancer activity of both extracts were studied against Hela cell line and the anticancer activity appeared at 250 Mg/ml and 62.5Mg/ml respectivily. The antioxidant activity of extracts were examined by three different methods ,B - carotene ,hydrogen peroxide scavenger and ferrus ion reduction , the results of three methods showed that both fungal extracts have antioxidant behaviours and the T.harzianum extract had more antioxident activity than F.solani extract and the antioxidant activity of both fungal extracts were increased as the concentration of the extracts increase.An optimization of the fungal growth and bioactivity of both fungi were conducted, by using different Nitrogen sources ( Asparagine , Yeast extract , peptone , Ammonium chloride , Sodium nitrate , Ammonium sulphate ) and carbon sources ( Maltose , Galactose , Glucose , Dextrose , Sucrose ,xylose and Starch ) the results elucidated that yeast extract was the best for growth of both fungi on solid and liquid media and high inhibition activity appear with T.harzianum against bacteria isolates , the carbon source starchenriched the growth of F.solani with more activity in inhibition the bacterial growth while the sucrose give high enrichment to the growth of T.harzianum in solid and liquid media with high activity toward bacterial growth. The study also indicates that the beast temperature and pH which gives the higher activity and growth 25°C and pH6 . The effect of different concentration of salinity were studied as well (1%,2%,3%,4%,5%,6% NaCl)and 2% showed the best concentration .The activity of two studied fungal extracts were superior than commercial antibiotic toward bacterial isolates .Preliminary qualitative chemical tests were carried out on the extracts and their chemical nature were identified .TLC technique were used and the chemical analysis showed that F.solani extract consist of two components with constant Rf values, the components marked as A1 and A2 . A1 shows higher activity against bacterial strains while T.harzianum extract consist of one component.The chemical structures of the isolated compound were

دراسة تصنيفية وبيئية لبعض انواع عائلة ذباب الخيل Diptera : Tabanidae ودورها في نقل طفيلي Trypanosoma evansi في محافظة البصرة

Author name: علاء ناظم حاتم علي
Supervisor name: ضياء خليف كريم
General topic: Biology
Specific topic: Zoology - Insects
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:

التغيرات الكيميوحيوية المصاحبة للشد الملحي وتقييم دور مستخلص الطحلب الاخضر Cladophora crispata في نبات الرز Oryza sativa L. المستزرع نسيجيا

Author name: عبد الامير رحيم عبيد
Supervisor name: حسيي خلف زاير | لوى حسين عبد القادر
General topic: Biology
Specific topic: Plant - Physiology
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: This study was conducted at the tissue culture laboratory at the Dept. of biology, College of Education pure Sciences from 1/3/2012 - 1/12/2014.With the objective of studing the tolerance of the salt stress of two rice (Oryza sativa L.)cultivars namely Anber and Furat using the technology of tissue culture. . Mature seeds (mature embryo and endosperm) were used as bing parts of explants which were cultivated in a semi - sold( Murashige and Skoog 1962) nutrient medium and some additives such as vitamins and amino acids .The growth regulator Dichlorophenoxy acetic acid (2.4 - D)was used, about 8mg/l , sucrose at 30g.l - 1 . . The study ,also ,tested the effect maltose at 30g.l - 1, and the effect of 0.5g/l of casein hydrolest were tested.the study also included the different of sea water concentrations (0,20,40,60)%on the induction of growth and development of callus ,the effect of green algae extract at Cladophora crispate by adding 1g fresh weight to the nutrient medium with all sea water concentrations.All the features of the callus were tested as well as the effect of the interaction between sea water concentrations and algae extract , as well as interactions among rice cultivar x sea water concentration x algal extract.The study depended on some growth indicators to determine the degree of callus to tolerance towards salt stress .the resistance of callus to salt depended on regeneration through the required of time for the formation of embryos ,number of germinated embryos ,and number of plantlets .The concentration of the major metal ion : sodium, potassium, phosphorus, calcium ,magnesium, potassium/sodium percentage , and the minor metal ions : iron ,copper, manganese were also some chemical components such as protines and amino acid proline measured, were also measured .The randomized block design (C.R.D)and factorial experiments were used depending ten replicates per treatment .The results can be summarized as follows : 1 - The results showed that the addition of sugar di maltose as an energy source and Casein hydrolyses to the nutrient medium had appositive effect on significant decrease in the required time to mitiate the callus ,in the increase of callus induction percentage and in the increase of freshweight of initial callus. .2 - The effect of sea water and algae extract : . A - The current study shaued that the addidtion of 20 and 40 % sea water to the nutrient medium resulted in a significant increase in the required time to induce the callus ,and a significant decrease in the percentage of callus induction and weight of the mitial callus as compared with the control treatment .The concentration 60%0f sea water caused the mature seeds to lose their ability to germinate and induce the callus if no induction occurs at all . The effect of algae extract resulted in a significant decrease in the required time for callus induction ,and a significant increase in the percentage of callus induction ,the weight of the mitial callus and 0,20,40% of sea water as compared with free algae extract medium.B - The results showed that the addition of 20% of sea water to the nutrient medium that is prepared for the growth of the embryo callus led to a significant increase in the fresh weight as compared with the control treatment , whereas the two concentrations 40 and 60%sea water led to a significant decrease in the embryo callus weight .The effect of the algae extracted to a significant increase in the fresh weight of the embryo callus with sea water concentrations as compared with the free algae extract medium.C - The addition of 20,40 and 60%sea water cause a significant decrease in the number of the somatic embryos ,thir germination auerage ,number and germination of the formed plantlets . This addition also caused a significant increase in the required time to stare the germination of the somatic embryos as compared with the control treatment .The addition of the algae extract led to increase the number of formed embryos ,germination percentage ,and number and percentage of plantlets ,wher was the addition led to lower the required time to germination the embryos compared with the free algae extract medium.D - The addition of 20 ,40 and 60% sea water to the nutrient medium resulted in a significant increase in the concentration of sodium ,calcium ,and magnesium ion in the embryo callus ,while a significant decrease occurred in the concentration of potassium and phosphorus ion and thedpotassium/sodium percentage as compared with the control treatment .The abone mentioned concentrations 0f sea water led to significant increase in concentration of ion ,copper, and zinc ions ,and significant decrease in manganese ion ,The addition of the algae extract caused in lowering the concentration of sodium ion .This decrease was significant in the 60 % sea water medium. The ingrease of potassium ,calcium ,phosphorus, and magnesium ion in embryo callus tissue when compared with free algae extract medium and was significant with some sea water concentration.E - The results ,also ,showed that the addition on 20, 40 and 60% concentrations0f sea water resoled in a significant decrease in concentration of some chemical ingredients such as protein and amino acid proline of the embryo callus in comparison with the control treatment . as far as the effect of the algae extract is concerned ,the addition of this extract to the nutrient medium led to a significant increase in the concentration of the proteins and amino acid prolne as well as with all sea water concentrations.F - The results of study showed that the addition of 20,40,60% sea water led to a significant increase in the rate 0f effectiveness 0f the enzyme Super oxide dismutase (S.O.D) and enzyme Ascorbate peroxides (APX),reaching the highest rate of effectiveness of the enzyme at the concentration 0f 60% compared with the comparative treatment , whil the highest average of the effectiveness of enzyme Catalase (CAT)and glutathione piroxidase (GP)and polyphenoloxidase (ppo)was at the concentration 20%sea water then it started to decline when increasing the concentration of sea water from 40 to 60% As for the algae extract it has been shown from the results of the current study that the addition of algae extract to nutrient medium to a high effectiveness of enzyme SOD,CAT ,APX and GP and more significant with all concentration of sea water The impact of algae extract on the effectiveness of the enzyme PPO has led to increasing the effectiveness of this enzyme but did not amount to a significant level except with sea water nutrient medium .G - The results of the current study showed a significant increase of the Amber cutivar in the percentage of the callus induction and the required time of this induction as well as the Wight of the initial and embryo callus ,number and germination percentage of thesomatic embryo , number of plantlets ,as wall as the percentage of the accumulation of potassium ,phosphorus ,calcium, and manganese ions ,as will as in the potassium/sodim ratio focus histidine proline and the effectiveness of the enzyme SOD and CAT enzyme and enzyme GP. While the product was higher than in the accumulation of Firat magnesium ion ,zinc copper and in the effectiveness of the enzyme in APX & PPO . .

واقع التلوث بالمركبات الهيدروكابونية في المياة والرواسب وبعض الاحياء المائية في مهر الكحلاء محافظة ميسان / العراق == The Status of Hydrocarbon Compounds Pollution of Water, Sediments and Some Aquatic Biota in Al - Kahlaa River - Missan Province /Iraq

Author name: صالح حسن جازع
Supervisor name: عبد الحسن يوسف العضب | حامج طالب السعد
General topic: Biology
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: The present study was performed to have knowledge of hydrocarbon compounds pollution status in the water (dissolved and particulate fractions),sediments ,two species of aquatic plants (Ceratophyllum demersum and Paspalum pespaioides) ,two species of fishes(Liza abu and Carassius auratus) and one species of molluscs (Pseudodantopsis euphraticus) .The samples were collected monthly for the period November 2012 to October 2013 from four different stations ) Al - Magideh, Treatment unit, Al - Husaichi and Al - Zubair) distributed along Al - Kahlaa River in Missan province , in addition to Reference station lies on the Tigris River before entering Amara district about 25 Km .The sampling's months were divided into four typical seasons although this is incompatible with Iraq climate.As well as measures of some ecological parameters (water and air temperatures ,pH ,turbidity, electrical conductivity ,dissolved oxygen , biological oxygen demand BOD5 and total suspended solid) which ranged between 22 and 42 C˚ , 18 and 31 C˚ , 6.9 and 7.82 , 42 and 172 NTU , 12 and 118 μS/cm , 4.66 and 9.25 mg/l , 1.46 and 5.04mg/l ,33 and 108 mg/l respectively .In addition to that the Organic Matter(OM) and the texture were measured in the sediment samples. OM values ranged between 0.078 and 0.927% , whereas the percentage of the texture was ( 15 %clay, 71% silt and 14% sand),(31 %clay, 63% silt and 6% sand), (33 %clay, 57% silt and 10% sand) , (40 %clay, 47% silt and 13% sand) and (18 %clay, 55% silt and 27% sand) in Al - Magideh, Treatment unit , Al - Husaichi , Al - Zubair and Reference stations respectively .The concentrations of total petroleum hydrocarbons (TPHs)were measured by using spectrofluorometer. Concentrations of total petroleum hydrocarbons in dissolved fraction ranged between 1.36 μg/l in Reference station and 13.87 μg/l in Treatment unit station during summer and winter respectively ,and in particulate fraction between 2.69 μg/g dry weight in Reference station and 29.92 μg/g dry weight in Treatment unit station during summer and winter respectively ,while in sediments they ranged between 3.16μg/g dry weight in Reference station and 135.18 μg/g dry weight in Treatment unit station during summer and winter respectively. Concentrations of total petroleum hydrocarbons in C. demersum ranged between 5 μg/g dry weight during winter and 58.97 μg/g dry weight during summer , while in P. pespaioides between 3.18 μg/g dry weight during winter and 43.44 μg/g dry weight during summer. Concentrations of total petroleum hydrocarbons in L. abu ranged between 4.81 μg/g dry weight during spring and 37.3 μg/g dry weight during summer ,while in C. auratus between 2.51 μg/g dry weight during spring and 29.303 μg/g dry weight during autumn . Concentrations ofbtotal petroleum hydrocarbons in P. euphraticus ranged between 5.98 μg/g dry weight during spring and 119.75 μg/g dry weight during summer .The concentrations of Polycyclic Aromatic Hydrocarbons(PAHs) and n - alkanes were determined in the laboratories of Nihran Omer (South Oil Company in Basrah province ) ,using Gas Chromatography.Total concentrations of n - alkanes in dissolved fraction ranged between 0.027μg/l in Reference station and 0.192 μg/l in Al - Husiachi station during winter and between 0.016 μg/l in Reference station and 0.039 μg/l in Treatment unit during summer ,and for particulate fraction between 0.108 μg/g dry weight in Reference station and 2.096 μg/g dry weight in Treatment unit station during winter and between 0.101 μg/g dry weight in Reference station and 0.160 μg/g dry weight in Treatment unit station during summer ,while in sediments they ranged between 4.491 μg/g dry weight in Reference station and 51.32 μg/g dry weight Treatment unit station during winter and between 2.31 μg/g dry weight in Reference station and 19.31 μg/g dry weight in Treatment unit station during summer.The range of carbon chain length of n - alkanes in dissolved fraction ranged from C8 to C34 and in particulate fraction from C15 to C34 distributed in two patterns ,the first pattern included compounds between C8 and C25 with the abundance of C19,C21,C23 and C25 odd carbon number of and C18,C20,C22 and C24 for even carbon number ,while the second pattern included compounds with the range from C26 to C35 predominated by C27 and C29 odd carbon number and C26,C28 and C30 even carbon number.In sediments they ranged from C14 to C35 and distributed in two patterns, the first pattern included compounds between C8 and C25 with the abundance of C17,C19 and C21 odd carbon number and C18,C20 and C22 for even carbon number ,while the second pattern included compounds with the range from C24 to C35 with predominance of C31and C33 odd carbon number and from C24 to C34 even carbon number.Total concentrations of n - alkanes in C. demersum ranged between 6.467 μg/g dry weight during spring and 59.483 μg/g dry weight during summer ,whereas in P. pespaioides between 34.7 μg/g dry weight during winter and 166.6 μg/g dry weight during summer .The distribution of n - alkanes compounds in plants chain length ranged from C15 to C35 with bimodal from C15 to C27and from C28 to C35 with predominance of C17 to C25 odd carbon number and C18 to C24 even carbon number in the first one ,whereas in the second the dominance compounds were from C29 toC33 for odd carbon number and from C26 to C32 even carbon number.cTotal concentrations of n - alkanes in muscles of L. abu ranged between 14.60 μg/g dry weight during winter and 73.15 μg/g dry weight during summer and C. auratus between 34.76 μg/g dry weight during winter and 166.61 μg/g dry weight during summer . The distribution of n - alkanes compounds in fish muscles chain length ranged from C16 to C35 with bimodal from C16 to C25 and C26 to C35 with predominance of C17 to C25 and C18 to C24 for the first one ,and from C27 to C33 and from C26 to C34 for the second. These reflected nutrition nature for these kinds of fishes which depend on algae ,phytoplankton ,zooplankton ,diatoms ,insects and crustacean . While in the mollusc (P. euphraticus) ranged between 95.16μg/g dry weight during spring and 220.36 μg/g dry weight during summer. The distribution of n - alkanes compounds in P. euphraticus chain length ranged from C14 to C35 with bimodal from C14 to C27 and from C28 to C35 with predominance of C17 to C21 and from C18 to C24 for the first one ,and from C29 to C33 and from C30 to C34 for the second.The values of Carbon Preference Index (CPI) and pristane to phytane ratio was calculated to know the hydrocarbon compounds source in water ,sediments and biota of Al - Kahlaa River ,since the CPI value ranged between 0.142 and 1.314 in dissolved fraction and between 0.045 and 2.193 in particulate fraction , 0.160 and 1.872 in sediments,1.075 and 8.638 in plants , 0.285 and 1.537 in fishes and between 0.354 and 4.457 in mollusc .Whereas the values of pristane to phytane ranged between not detected and 1.579 in dissolved fraction , not detected and 0.601 in particulate fraction , 0.447 and 3.008 in sediments, not detected and 0.821 in plants , not detected and 2.176 in fishes and between 0.822 and 1.347 in mollusc .These indicate that there are two sources of hydrocarbon compound in water ,sediments and biota ,biogenic from living organisms and anthropogenic from domestic ,industrial and petroleum pollutants except in plants .Total concentrations of PAHs in dissolved fraction varied from 0.739 ng/l in Reference station to1.974 ng/l in Treatment unit during winter ,and from 0.300 ng/l in Reference station to1.125 ng/l in Treatment unit during summer ,and in the particulate fraction they varied from 0.79 ng/g dry weight in Reference station to 24.42 ng/g dry weight in Treatment unit during winter ,and from 4.369 ng/g dry weight in Reference station to10.545 ng/g dry weight in Al - Husaich during summer ,while in sediments they varied from 4.906 ng/g dry weight in Reference station to 35.479 ng/g dry weight in Treatment unit during winter ,and from 2.391 ng/g dry weight in Reference station to 25.886 ng/g dry weight in Treatment unit during summer.It had been noticed that there were a predominance of high molecular weight PAHs on low molecular weight PAHs ,while Benzo(a)dAnthracene/(Benzo(a)Anthracene+ Chrysene) BaA/(BaA+Chr) ratio ranged from 0.218 to 0.804 in water and 0.520 to 0.66 in sediments. The Indeno (1,2,3 - cd)pyrene /(Indeno (1,2,3 - cd)pyrene + Benzo(ghi)perylene) InP/(InP+BghiP) ratio ranged between not detected and 0.578 in water and between not detected and 0.681 in sediments .The Fluoranthene/ Pyrene (Fl/Py)ratio ranged between 0.150 and 2.47 in water and between 0.10 and 8.490 in sediments ,this give an indication of the source of PAHs compounds in water and sediments which were mainly pyrogenic and few from them petrogenic .Total concentrations of PAHs in C. demersum ranged between 24.124 ng/g dry weight during winter and 87.289 ng/g dry weight during summer ,whereas in P. pespaioides between 1.616 ng/g dry weight durig winter and 16.661 ng/g dry weight during summer .The Lower Polycyclic Aromatic Hydrocarbons to Higher Polycyclic Aromatic Hydrocarbons ratio ranged between 0.006 and 0.009 in C. demersum and between 0.008 and 0.103 in P. pespaioides. TheBaA/(BaA+Chr)ratio ranged from 0.995 to 0.997 in C. demersum and 0.756 to 0.995 in P. pespaioides. The InP/(InP+BghiP) ratio ranged between 0.342 and 0.807 in C. demersum and between 0.19 and 0.645 in P. paspaloides . The Fl/Py ratio ranged between 0.096 and 0.988 in C. demersum and between 0.018 and 5.018 in P. pespaioides. These indicate that the sources of PAHs in these plants were both pyrogenic and petrogenic .Total concentrations of PAHs in muscles of L. abu ranged between 2.301 and 16.661 ng/g dry weight during winter and summer respectively and in C. auratus between 1.095 and 8.675 ng/g dry weight during winter and summer respectively ,whereas in mollusc (P. euphraticus) ranged between 1.86 and 6.88 ng/g dry weight during spring and summer respectively. According to ratios of Low Polycyclic Aromatic Hydrocarbons(LPAHs) to High Polycyclic Aromatic Hydrocarbons (HPAHs), BaA/(BaA+Chr), InP/(InP+BghiP) and Fl/Py ,they certainly reflected that the PAHs sources in fishes and mollusk are pyrogenic as a main sources and petrogenic as a small part .Also results of this study revealed the presence of seasonal and spatial variations in concentrations of TPHs ,n - alkanes and PAHs in water ,sediments and aquatic biota from Al - Kahlaa River ,the highest concentrations were recorded during winter whereas the lowest during summer ,also the highest values of these compounds were recorded in Treatment unit station in comparison with other stations.

تقييم تلوث الهواء باستعمال دليل نوعية الهواء AQI ودليل التحول APTI لبعض المواقع المختارة في محافظة البصرة == Assessment of air pollution using AQI and APTI indices in selected locations of Basra governorate

Author name: شيماء هشام شهاب الدين
Supervisor name: نايف محسن عزيز
General topic: Biology
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: The current study has been done for period from December to January 2015 including five station in three replicate for each station distributed in Basra Province (Al - Qurna district ,city center - Ashar ,Altenuma, and Zubair as well as region which is called Abu Al Khaseb , it is chosen as a control station for being agricultural area. The samples have been collected monthly for evaluating the parentage of gas pollution concentration (CO2,CO,NOx,SO2 and TSP) . The concentration of gas is measured by using gas analyzer device and the mount of particles in the air is measured by PDR - 1200. And black carbon ( BC) was measured by using Aethalometer . AQI was using for air quality for knowing the quality of surrounding air . Maps are drawn which show the spreading pollutants in Basra Province during the season by using GIS program . it is clear that there was differences concentration rates of pollutant gases in Basra province, the seasonally difference for gases pollutant proved that in Winter recorded high value for gases CO2, CO which reached 258.62 ppm for CO2 and 7.19 ppm for CO while in summer it is register the high value for NOx and SO2 which reached 0.406ppm for NOx and 0.319 for SO2 while TSP recorded difference reach high concentration 323.54 μg/m3 during Spring .While ,there is no difference has been recorded for black carbon in Autumn and Winter where as high concentration reached 25000 ng/m3 .The yearly difference in Al ashar shows that the highest for CO2 and CO during the period of studying followed by Al - Qurna recorded the highest concentration for NOx and SO2 while al - Zubair station recorded the highest concentration for TSP . Abu al Khaseb station recorded the lowest concentration for all gases and TSP because nature of the region which is formed from farms with lack of human activity .according to AQI which is use to measuringBthe air quality which shows the status of air and the degree of pollution , seasonally it is the highest rang for moderate in yellow color in Abu Khaseb station to unhealthy for sensitive groups in orange color in both al Zubair and Altenuma station where as al Qurna station recorded red color for unhealthy and in Al Ashar station they are record very unhealthy in purple color .while AQI for annually difference for the stations of study for unhealthy for sensitive groups in orange color for all stations except Abu Khaseb station , these groups are considered by negative affection human being health .Biochemical analysis has been done for leaves of plants that are spreading in the study area for knowing the effect of pollutants on biochemical indicators .The study included three kinds of plants which are phoenix dactylifera , ziziphus sp. And conocarpus lancifolius . Biochemical analysis test included total chlorophyll , water content, ascorbic acid and pH .the total chlorophyll estimated by using UV - spectrophotometer ,while ascorbic acid was estimated by using gas chromatography . The results shows significant different among leaves for different plants species in different study stations , the Date palm trees phoenix dactylifera recorded the highest concentration for total chlorophyll with the comparison with other plants. The seasonally differences show that lowest concentration of total chlorophyll in Winter reached 2.11 mg/g .The ascorbic acid recorded highest value in Winter reached 1.41 mg/ g and the water content rate of less recorded value in Spring reached %59.26 with no differences are recorded in the rest of the seasons . pH was recorded the highest rang in Winter reached 7.53.Ziziphus sp. recorded the lowest content of total chlorophyll for Winter reached 1.87 mg/ g and ascorbic acid recorded the highest value in Winter 1.31 mg/ g . whereas there was no significant different in water content in all seasons .pH recorded the high rang 6.64 in Winter , there were no significant in the rest of the season .Conocarpus lancifolius recorded the lowest value of total chlorophyll comparison with the other plants .while the lowest value for total chlorophyll recorded 1.42 mg/g in Winter . Ascorbic acid reached the highest concentration 1.31 mg/ g in Winter , while the water content recorded the lowest value in Winter 36 .88 % . While pH recorded 5.80 the lowest value in Winter.According to the biochemical analysis for plants for getting the value APTI for knowing the ability of tolerance of plants for air pollution which reflects the capability of the plants to tolerance of air pollution . The result of the study shows that Phoenix dactylifera recorded the highest value 7.36 in Al ashar station where as there are no significant recorded among the other station . Ziziphus sp. recorded the highest value 6.41 in al - Qurna station followed by al - Ashar station 6.07 whereas the other station did not recorded any significant . It has been noticed that Conocarpus lancifolius shows that lowest value of APTI which reached 3.91 in Al Zubair station and there were significant differences among the other stations.APTI was used for getting the value of Anticipated Pollution Index (API) which estimating biological characteristic and the economic value for plants. The results of API showed that the plants in Basra province Phoenix dactylifera recorded the value 6 and it was in excellent category. Ziziphus sp. recorded as poor plants recorded the value 2 . while Conocarpus lancifolius recorded the value 1 category as very poor plants.it has been noticed from values of APTI and API for phoenix dactylifera makes it typical plants as bioindicator and reducing the pollution .It is concluded for the current study that there are variation quantity and quality for gases and obvious spread for it is concentration of polluted gases and particles in air of the study stations in Basra. It was found that Phoenix dactylifera is a typical plants for using as bioindicator and reducing the air pollution .

خصائص خمائر البيئة النهرية لمحافظة البصرة وقابلية بعضها على المعالجة الحيوية للعناصر الثقيلة والهيدروكربونات النفطية == Characterization of yeasts in river habitat in Basrah Province and an ability of some of them for Bioremediation of the heavy metals and oil hydro carbonate

Author name: سناء قاسم بدر
Supervisor name: باسل عبد الزهرة عباس
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:

تاثير هرمون الثايروكسين على بعض المعايير الوظيفية للدم وبعض الجينات المنظمة لتمايز النسيج العظمي في الفئران المختبريةmusculus L. Mus. == Effect of Thyroxine hormone on some of physiological parameters of blood and some regular genes of bone differentiation in Laboratory Mice Mus musculus L.

Author name: سلمى سعيد عباس
Supervisor name: سامي جبر المالكي | علي عبد اللطيف العلي
General topic: Biology
Specific topic: Zoology - Physiology
Degree: Doctorate
Language: Arabic
University location: Basrah
First pages:
Abstract: اجريت الدراسة الحالية لمعرفة تاثير هرمون الثايروكسين على تمايز العظم وبعض المعايير الفسلجية والتي شملت المعايير الدموية والهرمونات المحرضة للقند واوزان واطوال الاجنة واوزان المواليد في الفئران المختبرية البيضاء Mus musculus L.,اذ قسمت اناث الفئران المختبرية في الدراسة الحالية على مجموعتين هما : المجموعة الاولى الرئيسية : لدراسة تاثير هرمون الثايروكسين L.Thyroxine hormone على المعايير الدموية للاناث الحوامل وغير الحوامل وعلى تمايز العظم في الاجنة(باستخدام طريقة تحضير المقاطع النسجية الاعتيادية للاجنة والطريقة الجزيئية باستخلاص المادة الوراثية (RNA) من الاجنة وباستخدام تقنية النسخ العكسي RT - PCR والبلمرة الكمية qRT - PCR ومعرفة تاثيره على اوزان المواليد والاجنة, وتالفت من 90 انثى بالغة بعمر(10 - 12)اسبوع وقسمت على مجموعتين ثانوية ,و هي مجموعة السيطرة والتي حقنت حيواناتها بـ 0.1 مل من المحلول الفسيولوجي0.9% ولمدة 10 ايام متتالية.بينما المجموعة المعاملة حقنت حيواناتها بـ0.1 مل من هرمون الثايروكسين وبجرعة مقدارها 0.5 ملغم /كغم/يوم ولمدة 10 ايام يوميا بعدها شرحت 5 اناث من كلا المجموعتين ,و زوجت 40 انثى المتبقية ولكلا المجموعتين مع الاستمرار بالحقن لحين تشريح الاناث واستخراج الاجنة خلال فترات عمرية متباينة (9و10و11و12و13و14و15) يوم.اما المجموعة الثانية الرئيسية خصصت لدراسة تاثير هرمون الثايروكسين على الهرمونات المحرضة للقند وهرمونات الدرقية وانزيم Alkaline phosphatase.وتتالف من 15 انثى وقسمت على ثلاث مجاميع ثانوية تضم كل منها (5) اناث, وهذه المجاميع هي : مجموعة السيطرة وحقنت بـ0.1 مل من المحلول الفسيولوجي 0.9%.ومجموعة المعاملة الاولى وحقنت بـ0.1 مل من محلول هرمون الثايروكسين وبجرعة 0.5 ملغ/كغم/يوميا ولمدة 15 يوم للاناث العذارى قبل التزاوج.ومجموعة المعاملة الثانية حقنت بـ0.1 مل من محلول هرمون الثايروكسين وبجرعة 0.5 ملغ/كغم/يوميا ولمدة 30 يوم . اظهرت نتائج الدراسة الحالية ان المعايير الدموية قد تباينت قيمها خلال الفترات الزمنية وللمجموعات ضمن المدى الطبيعي عدا في حالات قليلة ,اذ وجد هناك انخفاض معنوي في اعداد خلايا الدم البيض والخلايا الحبيبية والخلايا الوحيدة والخلايا اللمفية والنسب المئوية للخلايا الحبيبية والوحيدة واللمفية واعداد كريات الدم الحمر,وكذلك قيم مستوى كمية الهيموكلوبينHb والنسب المئوية لحجم الدم المضغوط PCV(HCT)% ومعدل كمية الهيموكلوبين MCHومعدل تركيز الهيموكلوبينMCHC ومعدل حجم كريات الدم الحمرMCV والصفيحات الدموية PLT في فترات متباينة من الحمل للمجموعة المعاملة مقارنة مع مجموعة السيطرة. وبينت النتائج وجود زيادة معنوية في خلايا الدم البيض والخلايا الحبيبية والخلايا الوحيدة والخلايا اللمفية والنسب المئوية للخلايا الحبيبية والوحيدة واللمفية, ومعدل تركيز الهيموكلوبينMCHC والنسبة المئوية لحجم الدم المضغوط %HCT ومعدل حجم كريات الدم الحمر MCVو الصفيحات الدميةPLT في مدد متباينة من الحمل للمجموعة المعاملة مقارنة مع مجموعة السيطرة. وسجلت نتائج الدراسة الحالية حصول ارتفاع معنوي في قيم هرموني T4,T3في الحيوانات المعاملة مع انخفاض معنوي في تركيز هرمون TSHفي الاناث المعاملة مقارنة مع السيطرة,و اوضحت النتائج ايضا انخفاضا معنويا في مستوى الهرمون اللوتيني LH وهرمون الحليب وللمجموعتين(15و30) يوم وزيادة معنوية في الهرمون المحفز للجريبات FSHللمجموعة الثانية(30 يوما) ,مقارنة مع مجموعة السيطرة, ولايوجد تاثير معنوي لهرمون الثايروكسين على هرمون الشحمون الخصوي ولنفس الفترتين مقارنة مع مجموعة السيطرة, وحصلت زيادة معنوية في مستوى انزيم الفوسفاتيز القاعدي بعد 30 يوما من الحقن بهرمون الثايروكسين مقارنة مع مجموعة السيطرة ,وحصول انخفاض في اوزان الاجنة بعمر 15يوما والمواليد للاناث المعاملة مقارنة مع مجموعة السيطرة , وبينت الدراسة زيادة معنوية في اطوال الاجنة المعاملة بعمر 9 و10و11و15يوما مقارنة مع مجموعة السيطرة. اما الدراسة النسجية فقد بينت ان الهيكل العظمي في الاجنة بعمر 9و10و11 يوما عبارة عن بداءات اعضاء تتكون من نسيج ميزنكيمي,ولم تسجل الدراسة النسجية وجود فرق بين مجموعة السيطرة والمعاملة في تمايز العظم .وظهرت بداية التعظم الغشائي والغضروفي في الاجنة بعمر12يوما ,اذ لوحظ بداية تمايز الخلايا الميزنكيمية الى ارومات عظمية,مع وجود القليل من المادة البينية الشبيهة بالعظم بين الارومات العظمية في منطقة الفك السفلي قرب غضروف ميكل ,والفك العلوي والعظم الحنكي واللامي وغضاريف الاضلاع ,اما في الاجنة بعمر13 و14و15يوما فقد ازدادت عمليات تمايز العظم بنوعية ,فاضافة الى النمو الذي حصل في العظام السابقة في تكوينها فقد ظهرت عظام جديدة في مناطق اخرى من هيكل الجنين تمثلت بعظام الصفيحة القاعدية والفخذ وحزام الكتف وحزام الحوض والاضلاع ,اما النتائج الجزيئية الخاصة بتمايز النسيج العظمي في اجنة الفئران المختبرية فقد اشارت الى التعبير الجيني لبعض جينات النسيج العظمي وتشمل Runx2وOSX وOsteo(OSC) وSialo(BSP) والتي بلغت ذروتها في مرحلة (13) يوم. ان لهرمون الثايروكسين تاثير على التعبير الجيني لبعض الجينات التي ترتبط مع التمايز النسجي للعظم اذ يؤدي هذا الى التغير في التعبير الجيني زيادة احيانا وانخفاضا خلال المدد العمرية المختلفة للاجنة .نستنتج من الدراسة الحالية ان زيادة مستوى هرمون الثايروكسين يسبب اضطراب في المعايير الدموية والتعبير الجيني لجينات العظم وانخفاض مستوى الهرمونات المحرضة للقند (LH وProlactin) وزيادة مستوى الهرمون المحفز للجريبات, وتعد هذه الدراسة الاولى على مستوى جامعة البصرة | the present study was performed to know the effect of thyroxine hormone on differentiation of bone tissue and some of physiological parameters, which included blood parameters and Gonadotropine hormones and Weights and Lengths and birth weight of mus musculus L.the females are divided into two groups ;the main first group which included 90 adult females (10 - 12)week, that subjected to study effect of thyroxine hormone on blood parameters of pregnant , nonpregnant females ,and bone differentiation of embryos (by using tissue sections method and molecular technique by RT PCR , and qRT PCR), and also known it is effect on weight of fetus and newborns; this group was also subdivided into two secondary subgroup : - control group ; was injected with 0.1 ml of normal saline (0.9%) for 10 consecutive days ,and treated group; was injected with 0.1 ml of thyroxine hormone (0.5mg/kg/day) for 10 consecutive days ,after that, 5 females from both groups were anatomized,while 40 females were mated of the both groups with continuous of injection until the females were subjected to anatomical practices and then the the embryo were taken during varied peroids (9,10,11,12,13,14,15) day. The main second group which included 15 females ,was selected to study the effect of thyroxine hormone on ;sexual hormone ,thyroid hormone and alkaline phosphatase . this group was divided into another 3 subgroups,one regarded as control group which ; was injected with 0.1 ml of normal saline (0.9%) for 15 consecutive days.and second the first treated group (T1) ; was injected with 0.1 ml of thyroxine hormone (0.5mg/kg/day) for 15 consecutive days ,and without mating of the females,and the second treated group ; (T2);was injected with 0.1 ml of thyroxine hormone (0.5mg/kg/day) for 30 consecutive days and also without mating of the females. Results of the present study were shown that the blood parameters were varied in value between periods and groups (decreasing and increasing among normal value ) with exception in few cases , significant decrease of W.B.C , the granular cells ,monocytes, lymphocytes ,lymphocytes percentage ,granulocytes percentage and monocytes percentage during different periods of pregnancy in the treated animals compared with control , and was decreased RBC ,Hb ,HCT percentage ,MCH ,MHCH ,MCV, and PLT in varied periods , and we noticed a significant increase in WBC ,granular cells ,monocytes ,lymphocytes , granulocytes percentage , monocytes percentage , MCHC ,HCT percentage,MCV, and PLT in varied periods of pregnancy in the treated animals compared with control. Our study was exhibited significant increase in levels of T3 and T4 hormones of the treated animals compared with control, with significant decrease in TSH of treated animals , also significant decrease in LH and prolactin H and for groups(15 and 30 days) ,and significant increasing in FSH of second group (30 day) ,when compared with the control , and there was no effect of thyroxine on TEST H level and for 2 periods(15 and 30) , significant increasing in alkaline pho after 30 days from injection with TH H , decreased of body weight of embryos (15 days) and newborns of the treated females ,the current study showed significant increase of lengths of treated embryos (9,10,11,15 days). The histological study was explained the skeletal tissue ossification of embryos during (9,10,11)day post gestation was primitive organs of mesenchymal tissue and The histological study was not show asignificant differences of bone differentiation between treated and control groups,and intramemberaneous ossification was appeared of embryos at 12 days ,in this stage the begining of differentiation of mesenchyme cells was appeared into osteoblast , with a little of matrix like bone between osteoblasts in Mandible near the meckle cartilage , Maxilla, Palatine,and Hyoid, and endochondral ossification as in Ribs, where in embryos (13,14,and 15) The bone differentiation processes were increased of bone (the intramembranous ossification and endochondral ossification),in addition to the growth of previously formed bones,also new bones were appeared in different areas in embryo skeleton like Basal plate,femur,Scapula girdle , pelvis girdle and the Ribs . In other hand, the molecular results of bone differentiation in embryo ,were exhibited peak of expression of some of the genes of bone tissue (Runx2 ,OSX, Osteo(OSC) ,and Sialo(BSP) ) at 13 days of embryo age, also the thyroxine hormone was effected in expression of some the bone genes that included disturbanceas like increasing of expression during peroids and decreasing in other peroids of embryos life. We concluded from the present study that the increase of thyroxine hormone level caused disturbances of blood parameters and gene expression of the bone genes & decreasing of the level of LH & prolactin hormones and increase the level of FSH. This is the first study on the Basrah University
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