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التوصيف المظهري والجزيئي للانواع البكتيرية المصاحبة لحالات الحروق في محافظة ذي قار == Phenotypic and Genotypic Charactrization of Bacterial species Assocuated with burn infections in ThiQar province

Author name: عبير هادي فرهود الحبيب
Supervisor name: رحمن لعيبي جلاب
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Dhi Qar
First pages:
Abstract: هدفت الدراسة الحالية الى تشخيص الانواع البكتيرية المصاحبة لحالات الحروق والكشف الجزيئي عن الموروثه 16SrRNA في الانواع البكتيرية المشخصة واستخدام تقنية DNA Sequencing . تناولت الدراسة الحالية فحص ومعاينة 107 مريضا تم اختيارهم بشكل عشوائي (ذكور واناث) تراوحت اعمارهم بين 1 - 45 سنة من الراقدين في مستشفى الحسين التعليمي للمدة من حزيران - 2015 تشرين الاول 2016 اذ اجري الفحص السريري من قبل الطبيب المختص وتشخيص الاصابة على انها حالة حروق مرضية ناتجة عن اسباب مختلفة. جمعت 107 عينة مسحات قطنية Cotton swabs وزرعت على وسط اكار المكونكي ((MacConkey agar واكار الدم ((Blood agar والاكار المغذي ((Nutrient agar. شخصت العزلات عن طريق الاختبارات المظهرية والبايوكيمائية وعامل التشخيص API20E ونظام الفايتك ( (Vitek 2compactفضلا عن التشخيص الجزيئي باستخدام جين.16S rRNA واظهرت نتائج الدراسة الحالية وجود 117 عزلة بكتيرية تفوقت فيها العزلات السالبة لصبغة كرام ((Gram negative بنسبة 93.16% على العزلات الموجبة لصبغة كرام (Gram positive)بنسبة 6,83 وكانت نسب توزيع العزلات البكتيرية المشخصة Pseudomonas aeroginosa 32.47% , Klabseilla pneumonia 21.36% واقل نسبــة عزل كانـت لبكتريا Staphylococcus epidermidis بنسبة عزل 1.7% , في حين كانت نسب العزلات البكتيرية التالية Acinetobacter baumannii , Escherishia coli , . Enterobacter claocae ,Staphylococcus aureus , Burkholderia cepacia, Pruteus mirabillis, , Pantoea agglomerans بنسبة عزل. 12.36% , 11.1% , 5.12% , % 5.12 , 3.41% , 2.56 على التوالي.تناولت الدراسة الحالية بعض الجوانب الوبائية للحالات المصابة التي شملت معلومات عن المرضى المصابين بالحروق التي تضمنت الجنس , العمر , موقع السكن ونوع الحرق. وبينت النتائج ان عدد الحالات المشخصة كاصابات حروق للذكور كانت بنسبة 42.9% بينما كانت نسبة اصابة الاناث 57.%, تم تقسم المرضى الى عدد من المجاميع حسب الفئات العمرية. اعلى نسبة اصابة كانت في الفئة العمرية 9 - 1سنة بنسبة 54.2% وهي الفئة الخاصة بالاطفال تليها الفئة العمرية erishi29 - 20 بنسبة 20.56% واقل نسبة اصابة كانت في الفئة العمرية 49 - 40 بنسبة 4.67% وكانت نسب الفئات العمرية الاتية 19 - 10 , 39 - 30 بنسبة 11.21 , 9.34 على التوالي. اشارت النتائج الى ان حالات الاصابات المشخصة توزعت بنسب متفاوتة فيما يتعلق بنوع الحرق اذ كانت اعلى نسبة اصابة بالحروق بواسطة الماء المغلي Boiled water 38% تليها اصابة الحرق بواسطة لهيب الغاز Fire by gas flame بنسبة 28.9% واقل نسبة اصابة كانت لحروق الصدمة الكهربائية بنسبة 4.67%.اما فيما يتعلق بطبيعة ومكان السكن فقد اظهرت الدراسة ان اعلى نسبة اصابة كانت بين الافراد الذين يسكنون المناطق الريفية بنسبة 84.1% في حين كانت اصابات المركز بنسبة 15.88% . وجدت الدراسة الحالية ان نسبة الاصابة بالحوادث غير المقصودة كانت 86.9% في حين كانت الاصابات المقصودة 13% , لوحظ في الدراسة الحالية ان اعلى الاصابات بالحروق كانت تحدث في فصل الشتاء بنسبة 75.7% مقارنة باصابات الحروق في فصل الصيف 24.29% .اما بالنسبة الى اختبار فحص الحساسية فقد بينت نتائج الدراسة الحالية ان اكثر المضادات الحيوية فعالية ضد كل من البكتريا السالبة لصبغة كرامBacteria Gram negative والموجبة لصبغة كرام Gram positive هي Ceftazidin , Ciprofloxacin,Amicacin .واظهرت الدراسة ان اكثر العزلات مقاومة هي بكتريا P.aeruginosa التي اظهرت مقاومة لكل المضادات الحيوية بنسب متفاوتة. اكدت نتائج الدراسة الجزيئية لتضخيم جين 16SrRNA ان كل العزلات اعطت نتيجة موجبة لهذا الجين وان حجم الجين لكل الانواع البكتيرية كان 1500pb كذلك اكدت النتائج ان الحصول على500Pb من DNA Sequencing للجين 16SrRNA كافية لتشخيص الانواع البكتيرية كلا على حدة . ايضا تم مقارنة جميــــع نتائج DNA Sequencing للانواع البكتيرية (Pseudomonas aeruginosa ,Escherishi coli, Enterobacter cloaca , Proteus mirabillis, , Klebsiella pneumonia Staphylococcus.heamolyticus ,) التي اكدت تشابه نسب تتابع القواعد النيتروجينية مع نسب القواعد النيتروجينية المخزونة في البنك الجيني باستخدام برنامج MEGA6 Moleculas Evolutionary Genetics Analysis)) اكدت نتائج الدراسة الحالية على وجود 21 سلاله جديدة قيد التسجيل واعطيت الرمز TQU1 الى TQU12. | The present study addressed the examination and preview the 107 patients. who were randomly selected (males and females) and who ranged in age from 1 - 45 years old and have fallen asleep at the Hussein Teaching Hospital of the, period from Jon 2015 to November 2016. where he conducted clinical examination by a specialist doctor and diagnosed as a case of burns satisfactory result for different reasons. specimens were cultured on appropriated culture MacConkey agar, Blood agar and Nutrient agar, diagnosed isolates by phenotypic tests, Biochemical test, diagnosis factor API20E system Vitek 2 compact, as well as to molecular diagnostics, During this study, In total 117 bacterial isolates.109 isolates were Gram - negative bacilli and 8 were Gram - positive cocci. he distribution of bacterial isolates diagnosed Pseudomonas aeroginosa 32.47%, Klabseilla pneumonia 21.36% and the lowest rate was to isolate the bacteria by isolating Staph.epedermidis 1.7%, while the following bacterial isolates Acinetobacter baumennii, Escherishia coli, Enterobacter claocae, Staphylococcus .aueus, Burkholderia cepesa, Pruteus mirabillsi, Pantoea agglomerans by isolating : 12 : 82% , 11.1% , 5.12% 5.12% 3.41% 2.56 respectively. The present study addressed some of the epidemiological aspect of infected cases burns,which included information on patients with with burns, which included sex, age, residence location (place), burning type. The results showed that (42.9%) isolates were males and (57.%) were female.The most frequent patient were belonged to the 0 - 9 years old (54.2%) which is for children. 29 - 20 followed by isolation of 22 20.56% and less isolating rate was in the 49 - 40 age group. Created results also cases of infections diagnosed were distributed to varying degrees with respect to the type of cremation, where the highest rate of injury burns Boiled water 38%, followed by the burning by flames gas Fire 28.9%,Fire by gasoline flames (19.6%),Hot liquids (8.41%) and Electrical Shock(4.67%). As for the nature and place of residence have study found that the highest proportion of cases were among individuals who live in rural areas increased by 90 injured 84.1% while the injuries the center has reached 17 cases of burn injury by 10.88% ,Frequency of the manners of burning based on intention or accidentally was as follow : (86.95) of patients were burned accidentally and (13%) were intenion. Present results showed that the most frequent burning (75.7%)was occurred during winter. The lowest frequency (24.2%)was belonged to summer .So the most common time of burning of present was during winter. As for the screening test sensitivity was shown the results of the current study that the most effective antibiotics against both Gram - negative bacilli bacteria and Gram - positive cocci were Ceftazidin, Ciprofloxacin, Amicacin while most of isolates showed high resistance to Ticarkcillin, Gentamicin, Impenem. Where the highest proportion of resistant bacteria P.aeruginosa which showed high resistance to all antibiotics in different proportions. It showed the results of the molecular study to amplify the gene 16SrRNA that all isolates gave a positive result and it's within the range 1400pb - 1500 pb. Also it has been compared to the results of all the DNA Squencing bacterial species (P.aeruginosa, E.coli, E.cloaca, A.baumennii, P.mirabili), which confirmed its similarity ratios nitrogenous bases relay with nitrogenous bases ratios stored in the gene bank

تنقية جزئية وتوصيف Biosurfactant من بكتريا Bacillus subtilis وتاثيرها على نمو بعض عزلات البكتريا والفطريات

Author name: غـفـران فـلـيـح عـبد الـحـسـن عـزيـز الجـبـوري
Supervisor name: فاطمة عبد الحسين مجبل التميمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: تم الحصول على 102عزلة من العزلات البكتيرية من 40 عينة من عينات الترب الملوثة بالنفط من مختلف المناطق ورشة عمل السيارات، محطات وقود السيارات، مصافي النفط ولخمسة مناطق مختلفة في العراق . خضعت كل هذه العزلات الى الفحص المجهري والخصائص الزرعية ووجد ان 80 عزلة منها تنتمي الى جنس Bacillus ، هذه العزلات خضعت ايضا لاختبارات بايوكيميائية وشخصت بناءا على دراسة rDNA 16S من قبل مجموعتين من البرايمرات (andB16SF B16SR) و(1492R and 27 F) اذ وجد ان 51 عزلة منها تعود الى Bacillus subtilis . تم فحص جميع هذه العزلات من حيث قدرتها على انتاج biosurfactant عن طريق فحص النشاط انحلال الدم على وسط دم الاغنام حيث وجد ان جميع العزلات كانت من النوع تحلل الدم بيتا حيث تم فحصها اعتمادا على قياس الشد السطحي بعد زراعتها في Jacques medium اظهرت النتائج ان 46 عزلة من 51 عزلة كانت منتجة biosurfactant , وقد تم اختيار ثمانية منها تميزت بانتاجها لهذا المركب وهي (S1,S2,S3 S4,S5,S6,S7,S8) حيث كانت العزلة B. subtilis S4 هي الاكفا في الانتاج لذلك اختيرت في الدراسات اللاحقة . تم استخلاص Biosurfactant الخام من العزلات المختارة بواسطة وتنقيته جزئيا باستخدام طريقة Ion exchange chromatography باستخدام DEAE - Cellulose تلاها طريقة Gel filtration chromatography باستخدام Sepharose - 6B . تمت دراسة خصائص المركبات المنقاة واظهرت النتائج ان الوزن الجزيئي biosurfactant التي تنتجهاB.subtilis S4 تراوح بين (1036 - 1058دالتون) من خلال جهاز HPLC - TOF - MS . اظهرت النتائج ان الحد الاقصى لانتاج biosurfactant من العزلة تم بطريقة استخدام زيت الزيتون (3٪) وكبريتات الامونيوم (0.3٪) وKH2PO4 (1.5) غم / لتر، وبدرجة حرارة 30 مº والاس الهايدروجيني (7) وفترة الحضانة لمدة 72 ساعة. وقد تحققت اعلى نسبة للـ biosurfactant بعد مكملات الظروف المثلى الى 0.3 غرام / لتر من الوسط الزرعي . تم اختبارالنشاط البكتيري والفطري للعزلات الثمانية ضد بعض الجراثيم المسببة للامراض، وهي Staphylococcus aureus,Streptococcus pneumonia, Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis, Candida albicans , Candida tropicalis , Candida krusei , Rhizopus oryzae , Aspergillus niger وكانت العزلة الاكثر فعالية هي B.subtilis S4 التي اظهرت وجود نشاط ضد كل مسببات الامراض ماعدا S.pneumonia ,P.aeruginosa ,C.krusei . كما بينت النتائج ان مستخلص العزلة B.subtilis S4 اظهر اعلى تثبيط نموعند التركيز 1500 مايكروغرام / مل وصل الى 24 ملم ضد E.coli، 23 ملم ضد K.aerogenes، 21 ملم ضد S.aureus، 15 ملم ضدC.albicans، 14 ملم ضد P.mirabilis، 11 ملم ضد C.tropicalis، وتثبيط نمو الفطريات، حيث وصل معدل النمو الشعاعي الى 31.9 ملم ضد A.niger و9.7 ملم ضد R.oryzae عند التركيز 2 ملغم / مل. كذلك اظهرت النتائج ان سمية المستخلص B.subtilis خارج الجسم الحي على ذكور الجرذان البيض بلغت حوالي 922 ملغم / كغم وتشير اذ ان الاعطاء اليومي biosurfactant لم تظهراي حالة وفاة في اي جرعة ، ولم تلاحظ اي تغييرات غير عادية في السلوك اوتاثيرات سمية خلال فترة 28 يوما من العلاج. واثبت التحاليل انه ليس هناك اي تاثير سلبي على معايير الدم الفسلجية وهذا يؤكد صحة هذه المستحضرات الحيوية للاستخدام . | About 102 bacterial isolates were obtained from 40 oil contaminated soil samples from various automobile work shop ,cars fuel stations ,oil refineries of five different areas in Iraq. Microscopic examination and cultural characteristics for all isolated were investigated , 80 isolates were found to be related to the genus Bacillus , Bacillus isolates were subjected to the biochemical tests and molecular identification based on the 16S rDNA by two sets of primers (B16SF and B16SR) , (27F and 1492R) of these 80 isolates revealed that 51 of the identified isolates belonged to Bacillus subtilis.All these isolates were screened for their ability for biosurfactant production through blood haemolysis activity on sheep blood agar indicated that all isolates were β - hemolysis while screening depended on measuring the lowering surface tension of cell free supernatant after cultivation in jacques medium which referred that 46 of 51 isolates were biosurfactant producers. Eight isolates were selected for the best biosurfactant producer isolatesCrude biosurfactants produced by the selected isolates were extracted by acid precipitation followed by partially purified with dichloromethane followed by purification and characteristics, the results showed that the molecular weight of biosurfactant produced by B.subtilis S4 ranging between 1036 - 1058 Da . Optimum conditions for biosurfactants production from B. subtilis S4 were determined. Results showed that maximum biosurfactant production from this isolate was achieved by using 3% olive oil , 0.3 % ammonium sulfate and 1.5 g / l Potassium dihydrogen phosphate ,at pH7,30 ºC and incubation period for 72 hrs. Maximum biosurfactant production was achieved after the supplementation of the optimum conditions was 0.3 g/l of culture medium .All of the eight isolates were tested for antimicrobial activity against twelve pathogenic microorganisms : Staphylococcus aureus ,Streptococcus pneumonia,Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis Klebsiella aerogenes,Candida albicans,C.tropicalis,C. krusei , Rhizopus oryzae , Aspergillus niger and Penicillium notatum.The most effective isolates were B.subtilis S4 which showed antimicrobial activity against some tested pathogens except S.pneumonia ,P. aeruginosa ,C.krusei and P.notatum.The results indicated that S4 culture extract showed high growth inhibition zone in concentration 1500 µg /ml reached to 24 , 23, 21, 15, 14 and 11 mm against E.coli , K.aerogenes , S.aureus , C.albicans, P.mirabilis,C.tropicalis respectively and high reduction in of radial growth of the fungi reached to 31.9 and 9.7 mm in A.niger and R.oryzae respectively at 2 mg /ml concentration .Study in vivo potential toxicity of B.subtilis lipopeptide biosurfactant towards male rat was evaluated. An LD50 value was determined to be about 922 mg / kg. Results show that daily administration of biosurfactant did not show any death cases at any dose. Also, no unusual changes in behavior and no intoxication were observed during the 28 days period of treatment. Analysis proved that there were no significant adverse effect on hematological parameters and this confirms the validity of those biopharmaceuticals on body of mammals.

دراسة لتكوين الغشاء الحيوي لبكتريا Escherichia coli وProteus mirabilis المعزلة من اصابات المسالك البولية في محافظة النجف الاشرف == Study of Biofilm formation of Escherichia coli and Proteus mirabilis isolated from urinary tract infection in AL - Najaf Al - Ashraf governorate

Author name: رسل عيدان محسن
Supervisor name: سهام جاسم محسن
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Najaf
First pages:
Abstract: The aim of this study is to inferring the ability of biofilm production and virulence factors which has helped to form it into two types of bacteria P.mirabilis and E.coli. Two hundred and fifty samples have been collected from patients who are suffering Urinary tract infection (UTI) in Teaching Hospital at Al - Najaf Al - Ashraf during the period ( 1/10/2014 - 1/1/ 2015). The samples have has identified by diagnostic methods : culturing , microscopic , biochemical and using VITEK - 2 compact system more sensitively and specifically method.The results have been showed that the isolation ratio was 30 (37.5%) of E.coli, while P.mirabilis was 14(17.5%) also, a five isolates (6.5%) wereEnterobacter cloacae ssp cloacae and only two isolates (2.5%) were Raoultella ornithinolytica from the total number of specimens. The virulence factors and antibiotic sensitivity test of two bacteria : P.mirabilis and E.coli were determined and the more virulence and multidrug resistance were selected.The hemagglutination properties of P.mirabilis which isolated from clinical samples were determined , the reaction with red blood cells of human group O+ was explored. The ratio of Hemagglutination was reached 42.86%, 50%, 7.14% to MSHA, MRHA and NOHA respectively. However, E.coli has been a different results that was reached 30 % , 26.67% and 43.33% from type MSHA, MRHA and NOHA as well. On the other hand, the thin - film production (pellicle) has been formed by 13 isolates of bacteria P.mirabilis and 21 isolates of bacteria E.coli, when it was growth on the nutrient broth in a temperature 37˚C for 24 - 18 hours. Moreover, it has been shown that there is high affinity for adhesion with the epithelium cell in the urinary tract. In addition, the E.coli has proved the higher efficiency than P.mirabilis in adhesion. It was detected ability of bacteria to biofilm production in three methods. The bacteria E.coli have showed their ability on biofilm production where by the rate was (43.3, 52 and60)% on the different growth ways which was the Congo Red, the tube and the plate respectively.The gel electrophoresis has been done on all isolates which was to analyzed on adhesive factors genetically whereby the bacteria P.mirabilis, E.coli have shown ability to gene expression (fimH and afaB) with a rate of (42.86 and 28.57)% and (30 and 20)%, respectively.Also, it has been clarified that the antibiotics ( Ciprofloxacin, Amikacin and Ceftazidime) have an effect on the most virulent bacteria to prevent the formation of biofilm when it is taken a half of minimum inhibitory concentrations. It was found that the minimum inhibitory concentrations were the most efficient in the prevent a biofilm formation in both types of bacteria.It appears to be found that the minimum inhibitory concentrations of these antibiotics were the most efficient in the prevent the formation of biofilm in both types of bacteria. Ciprofloxacin has the high efficiency to prevent the biofilm formation in E.coli while this concentration has no effective on biofilm production from others. It has been found that there is a clear positive relationship between the presence of adhesion gene (fimH , afaB) and the ability to adhesion on the epithelial .The conjugation process was conducted successfully to transfer the adhesion genes between (E.coli and P.mirabilis) which have been considered a donor strains to transfer the genes to the standard strain E.coli HB101 which have been considered a receipt strains whereby have shown ability to adhesion and biofilm formation.

دراسة مسحية للبكتريا المرتبطة بالتهاب الزائدة الدودية وتحديد الحالة النسجية للمصابين في محافظة البصرة == Survey of bacteria associated with appendicitis and determination of Histological patient state in the province of Basrah

Author name: هدى عبد الرحيم مذكور
Supervisor name: محمد عبد الامام احمد | نوري حنون جاسم
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Basrah
First pages:
Abstract: The current study has been done to determined pathogenic bacteria that associated with appendicitis .This study includes ninety samples of removal appendix taken form patients who cleared diagnosed as appendicitis infection by specialised doctors in general Basrah hospital and Al - Sadir teaching hospital for the period between September - 2013 and June - 2014.Distribution of appendicitis appear in all age groups, 10 - 20 year and 20 - 30 year were the most infected, as well as the infection appear in both gender, but rate of infection in male was relatively higher than female 68(59%), 47(41%) respectively. The ratio of the city's population has overcome the rural population 96(83.5%),19 (16.5%) respectively. The percentage of samples that gave positive culture was 80( 88.9%), while 10 (11.1%) of these samples negative culture. The study reveals 15 different bacterial isolation, the most common bacteria was Escherichia coli 80(44.9%) while other species was appears in less percentage Shigella dysenteria 14(7.9%), Salmonella enterica typhi 10( 6.5 %), Pseudomonas aeruginosa 8( 5.6 %) , Klebseilla Pneumonia 6(4.3%) , Klebseilla oxytoca 3(1.7%), Morganella morganai 7 ( 9.3 %) Neisseria spp. 6 ( 9.5%) , Enterobacter cloaca 4 ( 2.2 %) ,Serreatia spp. 3 )7.1 %(, Citrobacter ferundii 2 (7.7%) Proteus vulgaris 7) 6.5 %( Staphylococcus spp. 14(1.3%), Streptococcus spp. 72(5.1 %) and Bacillus subtilis 8)5.6 %(. Laboratory diagnosis for blood samples included estimated of total WBCs and found that (31%) of patients have natural WBCs values while the other patients have high values.Antibiotic sensitivity test to E.coli isolates towards 20 antibiotics because she is the most common bacteria showed that all isolates were resisted for most antibiotics which used in test especially for β - lactam group, and the isolates of E.coli were multi resistance for antibiotics.Identified minimum inhibitory concentrations MIC for some antibiotics The results showed that E.coli bacterial isolates's 30 isolation have shown resistance to anti AMO as MIC values ranged from 128 - 1024 Mcgm / ml while the MIC for Anti AMP values between 4 - 128 Mcgm / ml, As for antibiotics and Cefixim , Ceftriaxone, Cefotaxime, and it was her MIC values ranging between (1 - 128) Mcgm / ml Plasmid profile of E.coli isolates investigated to study the correlation between plasmid profile and antibiotic resisitant marker and results from agarose gel electrophoresis revealed that all E.coli isolates contain one plasmid band.This study includes the detection of some genes that encode to beta - lactamase enzymes in E.coli which were responsible about multi antibiotic resistanc and these genes loaded on plasmid DNA for ten isolaes and found that 5(50%) from isolates have blaTEM gene and 5 )40%( have blaCTX gene and 1(10%) have blaSHV gene. This study also considered note the general appearance of appendix samples , some of them are enlarged and surrounded by vesicles, some with fibrous walls and ulcerated with mixed colors, then examined the histological changes it, the study showed changes in histological structure of the excess was extensively congestion of blood vessels, veins in serosa and subserosal layers and increased the amount of diffuse lymphoid tissue in the layers of the appendix walls.

دراسة وبائية وجزيئية للجرثومة Escherichia coli O157 : H7 المعزولة من عينات سريرية وبيئية في محافظة البصرة - العراق == Epidemiological and molecular study of the bacterium Escherichia coli O157 : H7 isolated from clinical and environmental samples Basra Governorate / Iraq

Author name: عباس ضرب شعبان
Supervisor name: ميثم ايوب عبد القادر الحمداني
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Basrah
First pages:
Abstract: A total of 464 clinical and environmental samples attempt to isolate Escherechia coli O157 : H7 serotype were collected, of which 183 stool samples from diarrheal children at Al - Qurna hospital and Al - Medaina Hospital of children during the period between October 2013 - August 2014. Environmental samples (281) : 121 samples of drinking ( tap) water , 80 samples of river water , and 80 samples of sewage water (collected from different regions of Basra Governorate) . All samples was tested and detected the presence of Escherichia coli serotype O157 : H7 using chromogen agar and ( CT - SMA ) as selective media and using direct immunological testing for direct identification of the pathogen (Certeste) for clinical samples.The study revealed the isolation of 56 isolates of E.coli O157 : H7 at a rate of (12.06%) : 16 clinical isolates at a rate of (8.7%), 40 environmental isolates at a rate of (14.23) : 9 isolates from drinking water at a rate of (7.4%), 18 isolation from sewage at a rate of (22.5), and 13 river isolates at a rate of (16.25).Antibiotic susceptibility testing toward 20 antibiotic of E.coli O157 : H7 isolates showed that all isolates from all sources resistant to the antibiotics Ampicillin, Amoxacilllin, , Rifampin and Piperacillin while showed high sensitivity to antibiotics amikacin, Kanamcin, ciprofloxacin and norfloxacin.The clinical isolates of E.coli O157 : H7 showed multiple high antibiotic resistance index Muliple Antibiotics Resistance (MAR index) ranged between (0.25 - 0.8), Where two isolates showed a resistance to sixteen antibiotics, Two isolates showed resistance to twelve antibiotics, Two isolates showed a resistance to eleven antibiotics, one isolate showed a resistance to ten antibiotics,Three isolates showed a resistant to nine antibiotics and two isolates showed aresistance to eight antibiotics, One isolate showed a resistant to six antibiotics and two isolates showed resistance to five antibiotics.The environmental isolates of E.coli O157 : H7 showed less resistance ranged between (0.25 - 0.75) for samples of sewage and (0.35 - 0.50)rivers samples , and (0.30 - 0.55)tap water samples . As shown, one isolate resistant to fifteen antibiotics, one isolate showed a resistance to thirteen antibiotics and four isolates showed a resistance to ten antibiotics from sewage. As for rivers Tow isolates showed a resistance to ten antibiotics, three isolates showed a resistant to nine antibiotics while a one isolate of tap water showed a resistance to eleven antibiotics, three isolates showed a resistance to ten antibiotics and an one isolates showed a resistance to nine antibiotics and two isolates resistant to eight antibiotics.Investigating about the content of plasmid in isolates E.coli O157 : H7 to study the relationship between the plasmid content as an indicator of antibiotic resistance, as the results showed that most of the isolates E.coli O157 : H7 four clinical isolates containing the plasmid including one molecular weight > 10kbp with a Patterns of multiple different resistance,also two isolates contain three plasmids of a molecular weight > 10kb. And one isolate containing four plasmids with molecular weights ranging from (4 - 10Kb) and one isolate containing five plasmids resistant to sixteen antibiotics with molecule weights ranged between >(2 - 10Kb).The isolates E.coli O157 : H7 isolated from the environment , sixteen isolates showed that they contain plasmids of molecular weights> 10kb , one isolate contains two plasmids of molecular weights ranging between (4 - 10Kb), five isolates containing three plasmids of molecular weights ranging from (2.9 - 10) Kb and two isolates containing four plasmids of molecular weights ranging between( 2 - 10 Kb

انتاج وتوصيف متعدد السكريات الخارج خلوي Lactobacillus plantarum من بكتريا Exopolysaccharide المعزولة محليا ودراسة فعاليته البيولوجية == Production And Characterization of Exopolysaccharide (EPS) From Locally Isolated Lactobacillus Plantarum And Studying Its Biological Activity

Author name: بيداء مهدي عباس الغانمي
Supervisor name: ناجح هاشم كاظم الظويهري
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Karbala
First pages:
Abstract: Twenty - five isolates of Bacillus spp. Were isolated from 15 soil samples collected from different places in the Holly city of Kerbala, 13 isolates lactobacillus spp. Were isolated from 15 milk products and 7 isolates pseudomonas spp. The isolates were screened for their ability to produce Exopolysaccharide.The results showed that isolate number 3 (Lactobacillus lac 3) was found to give the highest production of the polymer, the isolate has been identified as lactobacillus plantarum. The optimal cultural and environmental conditions for EPS production were been identified which include using the production medium (simplified synthetic medium) containing date juice (5%) as a carbon source and yeast extract (0.2%) as a nitrogen source, the media was enhanced with a total concentration 0.9% of magnesium sulphate and potassium phosphate as mineral salts. The primary pH was adjusted to 6.5 and the inoculum size was 3%(v/v), isolates were grown under anaerobic condition at 35 Co for 24 h and the EPS extracted with ethanol 95%. Two steps were used for partial purification of the polymer as follows, the first step by using TriChloroAcitic acid (TCA) solvent and the second step by dialysis. The yields were (77.4 and 63.8)% for the two purification steps respectively. The biological activity of the EPS extraction from L. plantarum has been tested against some species of G+ve and G - ve bacteria and some fungal. The results showed that EPS extrac exhibits an inhibitory activity against Stenotrophomonas, Bacillus cereus and Proteus bacteria with an inhibition zone diameter of 23, 21, 19 mm respectively. While, there was no inhibitory effect against fungi. Antioxidant activity has also been tested, where IC50 value against ABTS free radical at 100 Mg / ml. The characterization of partially purified EPS is investigated by using Fourier Transform Infrared Spectroscopy (F.T.I.R). The molecular weight of the polymer was also measured by using viscometer and the molecular weight obtained by this technique was 2.3 *105 Dalton. The EPS extraction from selected isolate showed two spots when separated by Thin Layer Chromatography (TLC) which is analyzed as a glucose and galacto

تحضير لقاح مضاد للبكتريا المرضية المسببة لالتهاب القــدم السكري باستخدام التشعيع بالليـزر واطئ الطاقة == Preparation of Vaccine Against Diabetic Foot Pathogenic Bacteria Using Low Level Diode Laser

Author name: زينب عواد راضي محمد
Supervisor name: احسان فتح الله رستم محمد
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: English
University location: Muthanna
First pages:
Abstract: تهدف الدراسة الحالية الى تحضير نوعين من اللقاح (الحي المضعف، والمقتول) ضد البكتريا المسببة لحالات داء القدم السكري في الانسان، وذلك باستخدام اشعة الليزر ثنائي الصمام. تم جمع العينات من (40) شخص يعانون من التهاب القدم السكري، باستخدام مسحة قطنية معقمة Sw | The objective of this study is to prepare two types of vaccine (Live attenuated and killed vaccines) against pathogenic bacteria of diabetic foot infection in humans, using laser irradiation. Samples collected from forty patients suffered from diabetic foot infection, using sterile cotton tinge (Swab), the samples diagnosed depending on a number of morphological examinations, biochemical tests and culturing on selective media, as well as to use of the API system. The bacterial isolates obtained including the followings : Staphylococcus aureus (24.59 %), Klebsiella pneumoniae (22.95 %), Escherichia coli (21.31 %), S. epidermidis (9.84 %), Pseudomonas aeruginosa (9.84 %), Proteus mirabilis (8.20 %), and other species (3.28 %). The sensitivity of the bacterial isolates before irradiation to a number of antibiotics were examined, they all gave high resistance to the antibiotics, except two types (Amikacin & Ciprofloxacin), which the bacterial isolates were sensitive to. The bacterial isolates irradiated with laser using wavelengths (660, 820, and 915nm) to increase their sensitivity reaching to a step of attenuating or killing the bacteria with increasing exposure times. Then the attenuated and killed bacteria from each isolate used to prepare a mixed vaccine. Laser effect on the bacterial isolates showed a significant decrease in the viability of the bacteria of all species when the dose was increased, where occur killing the bacteria after 20 min and more of laser dose. The efficiency of the vaccine was tested by using laboratory animals, fifteen rabbits were used in the current study, they were divided into three groups with five rabbits each, one group for live attenuated vaccine inoculation, and the other one for the killed vaccine while the third group used as a control group. One month after the completion of the vaccination, the concentrations of the immunoglobulins (IgG, IgA, IgM C3, and C4) in the rabbit serum measured using Radial Immunodiffusion (RID) method.The results showed very high significant differences P < 0.001 for the level of IgG between the live attenuated vaccine group when compared with the control one, high significant differences P < 0.01 for the level of killed vaccine group compared with the control one.The results of IgA concentrations for the three groups were highly significant, P < 0.01, when comparing the attenuated with control group, while were significant, P < 0.05 between the killed vaccine group and the control one, it was also significant for the level of IgM, C3, and C4, when compared both the live attenuated and killed vaccine groups with the control one respectively. There were no significant differences between the live attenuated and the killed vaccine groups of all measured concentrations.Subsequently the animals inoculated again with a live dose of the bacterial isolates and the levels of (IgM, IgA, IgG, C3, and C4) were measured, the same results as in the vaccinations readings were obtained.Finally the animals were inoculated with the challenge dose of all the isolated live bacteria. The animals of the control group died, while the immunized animals remained healthy revealing the efficacy of the vaccine and the vaccination program.

انتشار بكتريا Escherichia coli في المرضى في المرضى المصابين بالتهاب المرارة الحصوي في محافظة الديوانية == Dissemination of Escherichia Coli In Patients With Cholecystitis Calculus In Al - Diwanyia Governorate

Author name: احمد رزاق واجد الداوودي
Supervisor name: سيوف خومان علوان الرماحي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Qadisiyah
First pages:
Abstract: The study aims to identify Escherichia coli bacteria, which causes calculus cholecystitis of molecular perspective. The study samples were gathered from 110 patients who undergone cholecystectomy in Diwaniya general hospital for the period October 2013 to April 2014. The sample included bile sap, gall bladder tissues and stone if available. The samples were cultured to identify their culture specifications.The results showed that chronic cholecystitis is the most common one, which has 55.5% then acute cholecystitis by 44.5%. The study results showed that age and sex have an influence on cholecystitis. The highest percentage of infection is the ages 36 - 45 for the two sexes. If the cases distributed according to the patient sex, there is a difference in cholecystitis between male and female, where females infections are 88.2% and males are 11.8%. The total isolated bacteria were 125 bacterial isolates of 52% of gall bladder tissues, 26.4% of bile and 21.6% of the stone. Escherichia coli had 34.4% of the total samples of 51.1%, 36.6% and 29.6% respectively of the above mentioned samples.As far as susceptibility for all Escherichia coli isolates towards 15 types of antibiotics by using disc diffusion for Kerby - Bauer method, bacteria had high susceptibility against ? - lactamases antibiotics where they had susceptibility against Ampicillin+ Clavulanic acid by 38.7% and 79% for Ampicillin. The least susceptibility was for Amoxicillin by 69.7%. Bacteria had no resistance for Imipenem where their susceptibility was 100%. Bacteria had weak susceptibility against Aztreonam by 13.9%. While with cephalosporins, susceptibility for Ceftazidime by 27.9% and for Cefotaxime by 20.9%. With Aminoglycosides, resistance to Gentamicin antibiotics was 34.8% and 30.2% for Amikacin. The results showed that resistance to Quinolones was 16.2 for Nalidixic acid while for fluoroquinolones resistance was 25.5% for Ciprofloxacin and 18.6% for Norfloxacin. Isolates ability to produce CTX - M, SHV, TEM and AMPC extended spectrum ? - lactamases enzymes was tested by investigating the existence of blaTem, blaAMC, blaCTX - M and blaSHV genes in these isolates through Polymerase chain reaction (PCR). There were 23/26 isolates (88.4%) showed their ability to contain blaAmpC gene, and 7/26 isolates (26.9%) contained blaSHV gene. There are 18/26 isolates(69.2%) contained blaTEM gene while 20/26 isolates (76.9%) contained blaCTX - M.Through using Quantitative Real Time - Polymerase chain Reaction (qRT - PCR), gene expression measurement for blaCTX - M, blaTEM and blaAmpC was measured by relative numbers. The results showed that gene expression measurement for ? - lactamases enzymes type AmpC produce by Escherichia coli was the highest if compared with ? - lactamases enzymes type TEM and CTX - M with different periods of incubation, which is T4h for 4 hours, T24h for 24 hours and T48h hours of incubation respectively. It is noticed that genes responsible for producing ? - lactamase enzymes type TEM, CTX - M and AmpC are changed during different periods of incubation through using Real Time - Polymerase chain Reaction (RT - PCR).

التحري عن عوامل الضراوة لبكتيريا اشيريشيا القولون المعزولة من المرضى المصابين بالتهاب المجاري البولية وقياس نمط بعض الحركيات الخلوية لديهم == Detection of Virulence Factors of Escherichia Coli Bacteria Which Isolated From Patient With Urinary Tract Infection And Measuring Some Cytokines In Them

Author name: رواء ماجد محمد البو صالح
Supervisor name: ميثم غالي يوسف
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Qadisiyah
First pages:
Abstract: تضمنت هذه الدراسة جمع 100 عينة من اعمار مختلفة للمرضى المصابين بالتهاب المجاري البولية الذين راجعوا مستشفى الديوانية التعليمي ومستشفى الولادة والاطفال في مدينة الديوانية , خلال المدة من تشرين الثاني 2012 الى نيسان 2013 للتحري عن بكتيريا Escherichia coli ا | groups of patient with pyelonephritis, whose visited Al - Dewaniya teaching and Woman s and children hospital in Al - Dewaniya city during the period from November 2012 to April 2013 for detection the isolates of Escherichia coli. The results showed that 56% of bacterial isolates were E.coli and 44% isolates belonged to others bacterial types. These results indicated that the females were more infected 67.86%(38\56) with pyelonephritis than the males 32.41(18\56). Always our result were pointed that the age of 30 - 39 old years have beeninfected with pyelonephritis and present the high percentage infection 30.36% comparison with others age groups (1 - 9, 10 - 19, 20 - 29, 30 - 39, 40 - 49, 50 - 59, 60 - 69, 70 - 79) , with percentage of (1.79%, 7.14%, 14.29%, 30.36%, 19.64%, 10.71%, 12.50%, 3.57%) respectively. The resistance of E.coli isolates to the four generation of Cephalosporin antibiotics were showed the following state : - The first generation of Cephalosporin antibiotic were indicated to Cephalothin 76.6%, Cefazolin 71.4%, Cephlexin 69.7% and Cephadroxil 66.1%. - The second generation of Cephalosporin antibiotic were indicated to Cefaclor 59.0%, Cefonicid 60.8%, Cefprozil 50.0%, Cefoxitin 64.2% and Cefmetazole 55.3%. - The third generation of Cephalosporin antibiotic were indicated to Ceftriaxone 32.2%, Cefotaxim 35.7%, Ceftazidim 37.5%, Cefixim 42.9%, Cefdinir 35.7% and Ceftizoxim 30.4%. - The fourth generation of Cephalosporin antibiotic were consisting of one antibiotic only like Cefepime with percentage of 39.3% The results concerned the virulence factors genes showed that the gene irp2 witch responsible for taking the iron from the blood, whereas the gene pap responsible for the production of P - type Pilli, afa gene responsible for the production fimbriae, iha gene responsible for production of capsule and the gene tst responsible for toxic shock. The result of PCR for the E.coli DNA showed that all the thirty isolates of this bacteria contain the gene irp2, while the others genes pap, afa, hly, and iha were presented the following percentage 36.6%, 30.0%, 96.6% and 10.0%respectively, whereas the gene tst didn’t recorded any isolates concerting. So in this study was to measure immune factors related to the urinary tract infection is in general and pyelonephritis in specially, has been measure some of cytokines which (Interleukin - 8, Interleukin - 6, Tumor necrosis factor - ?), they found increase in these factors in sera of patients with pyelonephritis compared to healthy persons.

دراسة مقارنة لعزلات بكتريا Staphylococcus aureus المعزولة من مياه النهر ومن حالات سريرية == A Comparative Study of Staphylosossus Aureus Bacteria Isolated From River Water And From Clinical Cases

Author name: بنين مدلول امانة الزيادي
Supervisor name: علي عبد رحيم الناشي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Higher Diploma
Language: Arabic
University location: Qadisiyah
First pages:
Abstract: شملت الدراسة جمع 120 عينة اخذت من مصدرين مختلفين, 60 عينة منها جمعت من بيئة مائية هي نهر الديوانية, بينما كانت 60 عينة سريرية جمعت من الاشخاص الراقدين والمراجعين لمستشفى الديوانية ومن الاصابات الجلدية المختلفة التي شملت الدمامل, الحصف, التقشر الجلدي, الخر | The study included assemble 120 samples which had been taken from two different sources, 60 samples collected from An aqueous environment which is Al diwaniya river, where the rest 60 samples have been collected from those people who were admitted to the Al diwaniya hospital and from of different ages from male and female. Where the environment examples collected from different places of riverbed Al diwaniya. The duration of collection samples has lasted for 3 months, started One handrad isolated had been diagnosed that proved its belong to a bacteria Staphylococcus aureus, 50 isolated where taken from environment isolate and the other 50 taken from clinical isolate depending on the diagnostic methods which included tests of farm, microscopic and biochemical, It was also confirm the diagnosis of bacterial using accurate diagnosis that uses device VITEK System tested sensitivity of bacteria isolate of S. aureus, against 12 selected antibiotic, environment and clinical cases has shown resistance and sensitivity of different varied by source isolate, the nature of the antibiotic and the resistance and sensitivity have been determined by measuring diameters of areas inhibition around tablets of antibiotics it used.All the clinical isolates showed a complete resistance for the antibiotic Lincomycin with 100% percentage, where it's resisted Pnicillin G with 92%, Nalidixic acid with 42%, while the highest resistance of environment isolates was 97% for Lincomycin. The clinical isolates showed a sensitively against the two antibiotics which are Cefamandol and Cephalothin, where their percentages reached 98% and 89%, respectively. Where the percentage of environment isolates reached for the same antibiotics 100% and 97% respectively. In general, the clinical isolates were more resisted for the antibiotics than environment isolates in overall rate.differed values of minimum inhibitory concentrationsmic MIC and the minimum bactericidal concentration MBC among each other with variation of clinical isolates from side and differed with environment isolates from another side while the values differed with environment and clinical isolates from third side, where the highest value reached of MIC against Polymyxin B is (20 - 120) and (100 - 240) mg/ml for environment and clinical isolates respectively, while the highest value of MIC that also was against Polymyxin B reached (40 - 140) and (130 - 250) mg/ml for environment and clinical isolates respectively. Where the value of MIC against Cephalothin reached (0.01 - 0.6) and (0.8 - 2.0) mg/ml for environment and clinical isolates respectively. Finally, the highest value of MBC also was against Cephalothin reached (0.08 - 0.9) and (0.9 - 3.0) mg/ml respectively. In general, the bactericidal and inhibitory concentrations of the clinical isolates are higher concentrations from those bactericidal and inhibitory concentrations for environment isolates.I studied the virulence factors that come from strains of S. aureus bacteria environment and clinical which included Capsula, enzymes of Coagulase that are associated and free, , Lipase, Hyaloronidase and B - Lactamase in addition to Haemolysin clinical isolates and Leucocidin and all the environment isolates are the highest percenage in the ability to form and possess virulence factors compared with environment isolates, where the highest percentage to produce virulence factors is belongs to the Haemolysin which reached 94% percentage in the clinical isolates where in the environment isolates reached 64% percentage followed by Leucocidin that reached 84% percentage in the clinical samples and 40% percentage in the In environmental samples.Also the percentage of blood Coagulation enzyme the associated and free is the highest percentage in the clinical isolates which reached percentage 42% and 38% for the associated and free respectively, where the percentage in environment reached 20% and 36% respectively and the virulence factors was the least presence in the environmental and clinical isolates is the portfolio that reached percentage of presence 22% and 12% respectively.

دراسة مقارنة لتاثير بعض المستخلصات النباتية وبعض الاحماض الكاربوكسيلية في البكتريا المسببة لالتهابات الحروق == Comparative Study of The Effect of Some Plants Extract And Carboxylic Acids On Contaminating Bacteria In Burns Infection

Author name: سـعاد خليـل ابراهيـم
Supervisor name: مهدي ضمد القيسي | جنان مجيد العقيدي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: Arabic
University location: Baghdad
First pages:
Abstract: جمعت (500) عينة من المرضى المصابين بالحروق من ثلاث مستشفيات في مدينة بغداد للمدة من 1/6/2007 ولغاية 1/11/2007. زرعت هذه المسحات على الاوساط الزرعية للعزل الاولى وتم تشخيصها بالفحوصات المظهرية والبايوكيميائية. اظهرت (489) عينة ملوثة بالبكتريا وبنسبة | • Five hundreds swabs were collected from patients suffered from burns in three hospitals of Baghdad city, for the period from 1st June 2006 to 1st November 2007. The swabs were implanted in order to be isolated and diagnosed by morphological and biochemical tests. • The results showed that 489 swabs were contaminated with bacteria (97.8%), while 11 swabs were not (2.2%). The identification and prevalence of the bacteria was as follow Pseudomonas aeruginosa was found in 148 swabs (30.27%), Klebsiella pneumoniae in 102 (20.26%), Staphylococcus aureus in 79 (16.16%), Escherichia coli in 70 (14.31%), Proteus mirabilis in 52 (10.63%) and Enterobacter cloacae in 38 (7.77%). • Information card for each patient was assigned included age, sex, time of suffering from burns, social status and address.• The degrees of suffering were as follow : - First degree of burns, 201 cases (40.2%). - Second degree, 187 cases (37.4%). - Third degree, 112 cases (22.4). Sensivity test to antibiotic and was done for all the isolated bacteria, and it was found, that, they were sensitive to Vancomycin, Ciprofloxacin, Amikacin, Tetracyclin and Fusidic acid within the percentage ratio of 0.0, 59.1, 3.7, 58.5 and 11.6%, respectively. Also it was found that the investigated bacteria showed high Vesistance to Penicillin G (87.9%), Erythromycin (93.9%), Trimethoprim (100%), Carbencillin (83.9), Cefotaxime (63.4%), Ampicillin (75.9%), Gentamycin (67.9%), Streptomycin (83.6%), Nalidix acid (89.4%) and Linomycin (83.2%). o Searching for the active compounds in the extracts of investigated plants (Linum usitatissimum, Nigella sativa and Eruca sativa) was conducted. It was found, that, the seeds of the three plants contained Glycosides, Alkalis, Flavonoids, Soapiness and Resins, which are not water soluble, but could be detected by the alcoholic extraction. Cumarin was noticed in the seeds of N. sativa and E. sativa only. o Different concentrations of water and alcohol extracts were prepared in addition to the isolation of oils, soapiness and Flavonids. The effectiveness of the extracts was tested at the concentration of 16, 32, 64, 128, 256 mg/ml for all the plants, against the bacteria.o The Phenol, water and alcohol extracts of L. usitatissimum and E. sativa showed high effect against the bacterial species, while that of N. sativa was less affective.o The Minimum inhibition concentration (MIC), was found to be different according to the type of extract and the species of bacteria.o The effects of the organic acids (Acetic, Citric, and Lactic) were tested at concentrations of 0.5, 1, 1.5, 2, 3 and 4% of each acid. An increase in the diameter of inhibition area, related with the increase in the acid concentrations, was detected. It was found that the acetic acid was more affective against the microorganisms, followed by the Citric acid and then the Lactic acid.o on the base of ratios of inhibition area diameters (in vitro), the results illustrated that E. coli was more affected by Acetic acid when the diameters reached 18.75, 21.75, 30.75, 38.25, 40.00 and 44.75 mm, respectively. The concentration of 1.5% was the effective enough against E. coli as diameters rates for P. mirabilis were 19.25, 18.25, 18.0, 22.56, 27.75 and 31.0 mm, respectively, followed by Ps. aeruginosa, S. aurues and En. cloacae when exposed to the optimum concentrations of Acetic, Citric, Lactic acids. The diameters at concentration of 4% were 23.50 and 23.66 mm. o The water extracts from all the involved plants, in addition to the organic acids showed good levels of effectiveness against the different studied bacterial species, when suffered by burns rats were exposed to them. A clear decrease in bacteria numbers in these rats in comparison with non - treated animals, in the swabs removed from the treated and non - treated rats, in addition to the absence of any histophathalogical changes in livers and skins of the treated animals. o Biochemical tests of serums from animals treated with the water extracts and organic acids at concentration of 16 mg/Kg and 18 mg/Kg for seven days and the microscope investigation, proved that these compounds were not toxic.o The effects of the water extracts and the organic acids were studied too from the point of the immunity point of view. An increase in the Levels of IgG and IgA of the supplementary systems C3 and C4 was noticed in the suffered from burns in general. The levels of IgG and IgA tended to be normal after the treatments with the water extract from the studied plants and with the organic acids.o The L D50 of N. sativa and E. sativa was 18 mg/kg while it was 16 mg/Kg of L. usitatissimum.

دراسة وراثية جزيئية لبكتريا المكورات المعوية البرازية Enterococcus faecalis المعزولة من جذور الاسنان الملتهبة للانسان في بغداد == Molecular Genetics Study of Enterococcus Faecalis Isolated From Root Canal Infection of Human In Bagdad

Author name: سوزان علي كاظم
Supervisor name: عذراء حميد حسون
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Baghdad
First pages:
Abstract: تم التحري عن نسبة وجود بكتريا المكورات المعوية البرازية Enterococcus faecalis في (100) عينة معزولة من اشخاص مصابين بالتهاب قناة جذر السن, اذ تم جمع (70) عينة من الاصابات الابتدائية لقناة الجذر، و(30) عينة من الاصابات الثانوية لقناة الجذر (اعادة العلاج) وم | To detection Enterococcus faecalis in (100) root canal sample were collected from primary and secondary root canal infection patient`s from all the ages (10 - 50) during the period of (August 2013) till (January 2014). Detection depending on cultural & microscobial characteristics of bacterial cell was done to find (45) 0f E. faecalis species & Biochemical tests & Serological diagnosis by Lancefield method done to find (24) isolates of this species & Diagnosis by Vitek2 was done to find (20) isolates of E. faecalis. When the Molecular genetics Diagnosis was done the result showed find (32) isolates belong to E. faecalis. The antibiotic sensitivity test was done by using (14) antibiotics, (5) isolates showed resistant against all antibiotics & the isolates showed multiresistant against for some antibiotics. All the isolates were resistant by (100 %) against (5) antibiotics. To detection of the isolates ability of production of protease enzyme, lipase enzyme, hemolysin enzyme & gelatinase enzyme.The results showed that (24 isolate) (75 %) were protease producer, & (8 isolates) (25 %) were lipase producer, & (16 isolate) (50 %) were hemolysin producer, & (5 isolates) (15.6 %) were gelatin producer. To detection the presence efa A gene of the isolates by used specific primer to this gene, and all isolates

تشخيص بعض النواتج الحيوية لانواع من السيانوبكتريا المعزولة من مياه وترب مدينة تكريت ودراسة فعاليتها على بعض انواع البكتريا المرضية والحيوانات المختبرية == Identification of Some Bioproducts From Some Species of Cyanobacteria Isolated From Water And Soil From Tikrit City And Study Their Biological Effects On Some Pathogenic Bacteria And Laboratory Animals

Author name: ايمن عوني سليم جاسم
Supervisor name: حميد سلمان خميس المهداوي | احسان محمود عبد الله
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: Arabic
University location: Salahaddin
First pages:
Abstract: تضمنت الدراسة الحالية عزل وتشخيص (19) نوع من السيانوبكتريا من عينات مياه وتربة طينية ومن الصخور من (5) خمسة مواقع في مدينة تكريت ضمن محافظة صلاح الدين، وقد تم اختيار ثلاثة انواع من هذه السيانوبكتريا وهي : Anabaena oryzae, Nostoc linckia, Anabaena laxa اعتم | The current study included Isolation and Identification of (19) species of cyanobacteria from water, clay soil and rocks samples, collected from (5) sites in Tikrit, salah Al - den province. Three species were chosen each species represent the environment which collected from it. These species were Anabaena oryzae, Nostoc linckia, Anabaena laxa. The effects of some environment factors on growth and biological products quantity has been studied in the three species above. The effects of the temperature showed that 26°C was the best for growth and biological products quantity than 16°C and 36°C. While the pH effects showed that pH 7.6 was the best for growth and biological products quantity than pH 6.6, 8.6. Three light intensities were used 1250, 2500, 5000 lux were used. The results showed that the light intensity of 2500 lux was the best for daily growth and quantity of extracted biological products. While the study of the effects of addition of macronutrient and micronutrient to Asm - 1 media which used for culturing of the three species of cyanobacteria by replacement of NaCl by NaNO3 in the medium, showed that there is an increase in daily growth and quantity of extracts of biological extracts, also the addition of FeSO4.7H2O and NaNO3 together showed further increase of daily growth and biological extracts quantity. The biological products has been identificated by HPLC - MS, IR and NMR. The results showed the presence of the neurotoxin Anatoxin - a and the hepatic toxin Microcystin in its various forms MCYST - LAba, MCYST - YM(O), [D - Asp3, Dha7]MCYST - LR and MCYST - YA in the biological products of Anabaena oryzae. The results also showed the presence of the hepatic toxin MCYST - YM(O) and [D - Asp3, Dha7]MCYST - LR in the extracts of the two spices of cyanobacteria Nostoc linckia and Anabaena laxa.The results also showed that the Muller Hinton Agar media is better than the Blood Agar media in testing the activity of these extracts in inhibition of the pathogenic bacteria, the method of holes is better than saturated discs, and the solvent DMSO (Di - Methyl Sulpho Oxide) is the better in testing of biological activities, while the filtrate of cyanobacteria did not shown any activity for inhibition of the pathogenic bacteria which include : Escherichia coli, Streptococcus pyogenes, Pseudomonas aeruginosa, Klebsiella pneumonia, Proteus Vulgaris, Staphylococcus aureus. The results showed the high capability of inhibition in concentrations of 1000, 2000, 3000 µg/ml of the extracts of the cyanobacteria Anabaena oryzae, Nostoc linckia and Anabaena laxa on the above pathogenic bacteria and some times more efficient than antibiotics used for comparison, and the concentration 3000 µg/ml was the most effective.The effects of biological extracts of the three species in concentrations of (1000, 2000, 3000) µg/kg of body weight on tested albino mice, using injection and feeding methods, was studied. The results showed poisoning nervous symptom for the first few hours, while the results showed hepatic poisoning symptom on the dissecting animals. The anatomic symptoms included changes the colour of the liver to darkening and appearance of necrosis, in addition to becoming lobbed and swollen some times with bleeding.While the poisoning effects on dissecting tissues of livers of the animals showed a simple swollen and some times assured in all of the liver accompanying with increase in growth and cell division, as well as increases in lymphatic cells inside the tissue and in general in liver tissue. The lymphocyte seemed bigger than for normal cell with multi - nuclei in white blood and increase in cell size and destruction of liver tissue. Nostoc linckia was the greater urging for cell division consequently probably more induce of cancer in the liver of the animals, while the biological product of Anabaena laxa showed more poisonous for liver cell than the biological products of Anabaena oryzae, the least effective in cytotoxic and urging cancer cell in liver of the animals.

العلاقة بين انتاج الانزيم المحلل للكولاجين وتكوين الغشاء الحياتي بوساطة بكتريا Pseudomonas aeruginosae == The Relationship Between Collagenase Production And Biofilm Formation By Pseudomonas Aeuroginosa

Author name: امال عزيز كريم السعدي
Supervisor name: شذى سلمان الطحان
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: A total of 359 samples divided as 228 clinical and 131 non clinical specimens were collected during 2012 from four hospitals in Baghdad city including : Al - Kadhymia Teaching hospital, Baghdad Teaching hospital, The Burn Specialist Hospital and Al - Imam Ali hospital, for isolation of P.aeruginosa to study the correlation between collagenase production and biofilm formation. Eighty two Pseudomonas isolates were screened for biofilm formation, 28 isolates were classified as strong biofilm formers, 25 as moderate and 27 as weak biofilm former. The 28 isolates were identifid by VITEk - 2 Compact system which confirmed that the isolates were P.aeruginosa. Collagenase production assay was used to screen 28 isolates that were strong biofilm formers inorder to detect the ability of these isolates to produce collagenase, the substrate of collagenase (collagen) was purified localy from bovin tendon and the results showed that just 8 isolates could grow in mineral salt media with collagen after 4 days of incubation. The factors affecting biofilm formation and collagenase production were studied to determine the optimual conditions for their production, those factors included : 1 - Nitrogen sources represented higher influence on collagenase production specialy (yeast extract) in media containing collagen than other media without collagen as a substrate. The specific activity differed between the 8 isolates, biofilm formation also became more pronounced with (yeast extract), while NH4Cl and NaNO3 depressed biofilm formation at the same conditions. The statistical analysis between the two parameters (biofilm and collagenase) according to different nitrogen sources demonstrated highly significance at p?0.01 with yeast extract and casein. 2 - pH, results showed that the best pH for production was 7 for both collagenase and biofilm.The statistical analysis for determination the relationshipe between the two parameters showed highly significance at p ?0.01 for different pH. 3 - The maximum production of the two parameters was at 35?C temperature which gave highly significance at p?0.01 with defferent temperature. 4 - Long incubation periods revealed increasing in collagenase production and biofilm formation which represented highly significance detween them when incubation periods were prolonged at p?0.01. Results of this study showed that collagenase production increases when bacteria switch from a planktonic to biofilm phenotype. This indicates that biofilms and collagenase are more virulent and have a greater ability to cause tissue destruction. The REP - PCR analysis using BOX - primer, showed a clusters genetic relatedness among the isolates. The isolates were grouped according to the REP - PCR in 9 different genotypes, named cluster 1 to 3 which included C1, C2, C3 with relatedness : 8 (80%), 8 (86%), 3 (80%) respectively. A19 and A20 both of them were not included in any cluster, they have 78% similarity.The REP - PCR analysis showed that the genotypic relatedness is consistently high between the 8 producer isolates and non producer isolates (13), showed similarity reached 86

تاثير اشعة الفا على التصاقية بعض انواع البكتريا == Study The Effect of The Alpha Ray On The Adhesion Some Type of Bacteria

Author name: فردوس غضبان كاظم
Supervisor name: زياد متعب الخزاعي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Higher Diploma
Language: Arabic
University location: Qadisiyah
First pages:
Abstract: تضمنت الدراسة الحالية جمع 37 مسحة من المرضى المصابين باخماج العيون في مدينة الديوانية ومن كلا الجنسين حيث تضمنت الدراسة سيادة نوعين من المسببات البكتيرية لاصابات العيون ودراسة قابلية التصاق هذه البكتريا على العدسات اللاصقة وهي المكورات العنقوديـــــــــــ | The current study included (37) samples were collected from sicks of Eyes infection in Al - Diwaniya city from two kinds that the study included two type dominant of Bacteria causes for Eyes infection and study this Bacteria adhesion ability on the Lenses, that the Staphylococcus aureus and Pseudomonas aeruginosa as well as the impact of exposure to (Radiology Alpha and Gamma rays) on adhesion ability, As well as the search included the application of a mathematical model to adhesion formula. The current study results are showed the Staphylococcus aureus for percent (45.94)% and then the Pseudomonas aeruginosa for percent (32.43)%. The results were obtained being clear impact of irradiation on Bacteria adhesion ability to Lenses. The results were obtained the higher level adhesion reaching its, the Staphylococcus aureus in the natural case to (cfu/mm2 10 - 6×292) that in three hours whereas the Alpha ray exposure more than adhesion level that range six hours to (cfu/mm2 10 - 6×302) and when the Gamma ray exposure the higher adhesion level reaching that range (cfu/mm2 10 - 6×233) during exposure period that reach to four and half hour. About the Pseudomonas aeruginosa the adhesion higher level in the natural case to (cfu/mm2 10 - 6×204) during two hours and half hour whereas when exposure its, to Alpha ray that reaching to higher level adhesion range (cfu/mm2 10 - 6×298) during six hours as well as when exposure to Gamma ray the higher level adhesion reaching range (cfu/mm2 10 - 6×250) during four and half hour. Application the mathematical adhesion sample, the result obtained that the disengagement coefficient, the valuable impact its, so that the valuable increased as well as temporal to be late in approach stage of zero who mathematically certain the lenses importance that the important dangerous effective for Eye infection distribution. As well as the results were certain the Alpha and Gamma rays were irradiation, that have impact of where decreasing the adhesion bacteria numbers for lenses, that decreasing from Eyes infection

دراسة مظهرية ووراثية عن بكتريا Enterococcus faecalis المعزولة من مصادر سريرية مختلفة في مدينة الديوانية == Phenotypic And Genotypic Study On Enterococcus Faecalis Isolated From Different Clinical Sources In Al - Diwaniyah City

Author name: حيدر سعود مايح الكرعاوي
Supervisor name: ازهار نوري حسين الموسوي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Qadisiyah
First pages:
Abstract: جمعت 280 عينة من حالات سريرية مختلفة من مستشفى الديوانية التعليمي ومستشفى الولادة والاطفال في مدينة الديوانية للفترة من 20/11/2012 لغاية 12/4/2013، لغرض عزل وتشخيص المكورات المعوية البرازية Enterococcus faecalis ودراستها مظهريا ووراثيا. اذ عزلت وشخصت 20 ع | Two hundred eighty samples were collected from different clinical cases of Diwaniyah Educational Hospital and Maternity and Children Hospital in the city of Diwaniyah, during the period from 20/11/2012 till 12/04/2013. 20 isolates of Enterococcus faecalis were isolated and identified.This isolates distributed on : 10 isolates from urinary tract infections and 10 isolates from cases of diarrhea while not isolated from wound and burn infections. The results of morphological cultures and microscopic study, biochemical tests, In addition to the use of diagnostic system Histrep and then the final diagnosis by a Vitek 2. Molecular diagnosis showed that all isolates contained 16S rRNA gene. Susceptibility test was done for all bacterial isolates against (9) antibiotics. The results showed that all isolates were complete resistance (100%) against Erythromycin, Tetracycline, Rifampin and Ciprofloxacin. While its resistance for other antibiotics was varied. The resistance isolates for Chloramphenicol, Nitrofurantoin, Penicillin, Gentamycin and Vancomycin were 50 %, 85%, 60 %, 70 % and 35 %, respectively. The results showed that the total resistance for E.faecalis isolates was higher than the sensitivity (more than 70% of these antibiotics). Polymerase chain reaction was used for detecting some genes for antibiotics resistance. The results showed that 7 bacterial isolates had van gene which were resistance to Vancomycin. 6 isolates of these bacteria contained vanB gene while one isolate contained vanA gene. Also the results showed that the bacterial isolates had antibiotics resistance genes as follow : aac (6) - aph (2) gene responsible for resistance to Gentamycin, cat gene responsible for resistance to Chloramphenicol, erm (A)gene responsible for resistance to Erythromycin, and tet (M) gene responsible for resistance to Tetracycline were 70%, 50%, 45%, 100% respectively. Some virulence factors had been detected for bacterial isolates including the ability of isolates of haemolysin production, protease production, gelatinase production and the ability to capsule formation. The results showed that 5 isolates (25 %) its ability of producing was type beta, and 15 isolates(75%) its ability of producing protease, 8 (40%) its ability of producing the gelatinase , and 5 isolates (25%) had the ability on capsule formation. The investigation for these virulence factors in genotypic method, the results showed that bacterial isolates had cylA gene responsible for the production of haemolysin, asal gene responsible for the production of aggregation substance, esp gene responsible for the production of Surface proteins for Enterococcus faecalis and hyl gene responsible for the production of hyaluronidase the percentage 25%, 90%, 55% and 5% respectively.

دراسة لتشخيص بكتريا الملوية البوابية Helicobacter pylori المعزولة من الخزع النسيجية والغائط == Study For Diagnosis Helicopacter Pylori Isolated From Biopsy And Stool

Author name: ابرار علي حسين
Supervisor name: هيام عبد الرضا كريم العواد | ياسمين خضير الغانمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Karbala
First pages:
Abstract: تناولت الدراسة الحالية عزل وتشخيص بكتريا (Helicobacter pylori) من الخزع النسيجية وعينات البرازالماخوذة من المرضى المراجعين مستشفى الحسين التعليمي حيث جمعت 122 عينة من الخزع النسيجية من وحدة الناظور من 61 مريض بواقع عينتين للمريض الواحد, كما تم جمع 228 عين | The present study addressed isolate and diagnose the bacteria (Helicobacter pylori) from biopsy and stool, samples taken from AL - Hussein Teaching Hospital where collected 122 samples of biopsy from the endoscopy. From 61 patients by two samples per patient, also were collected 228 samples of stool from the laboratory of the Department of parasites by two samples of 114 patients for the period from January 2014 to January 2015. Where shown on biopsy results which were subject to examination by the rapid urease test (RUT) the presence of 60 (98.4%) cases, while there were 23 (37.7%) case of those bacteria being positive related to biopsy was not significant differences between the two tests performed. When the distribution of test results (RUT) and culture according to age group, it appear that the highest percentage of infection was in 50 - 41 age group that which showed the highest percentage on examination (RUT) of the number of infected at 16 (26.23%) cases, either in the culture technique number of infected at 9 (14.75%) cases. But when the results of each of the examination (RUT) and culture were distribution according to the sex of the patient's infection was the higher in the females than males reaching males 28 (45.90%) cases in females of 32 (52.46%) cases for examination (RUT). No significant differences appear between the sexes in terms of infected. While the males in 8 (13.11%) and in the case of females was 15 (24.59%) case for the culture technique it did not show significant differences between the sexes in terms of the patients. While taking stool samples to check the stool antigens, it was found that there are 76 (66.7%) cases diagnosed while the technology for the polymerase chain reaction gene cagA to 49 (43%) cases have significant differences between the tests performed. When distribution the results of each of the stool antigens and polymerase chain reaction technique by age group category the highest infected was in 46 - 55 the age group with the number of 23 (20.18%) people case for screening stool antigens. The test results of the technology polymerase chain reaction showed that highest rate of infection was in the 35 - 26 age group where the number of patients was at 15 (13.16%) case.The results of the stool antigens examination also showed that the infection rate among males was higher than females, 39 males (34.21%) and in the case of females has reached the number of 37 cases (32.46%) casesThat did not show significant differences between the sexes patient. The technical results of the polymerase chain reaction by sex has been the injury was higher in females than males reaching 22 in males (19.30%) cases, while in females was 27 (23.68%) cases did not show significant differences between the sexes in terms of the infected. The results of the study conclude that (RUT) and stool antigen test is the fastest in the detection of infection from the bacteria H. pylori and then comes beyond culture technique for biopsy sample and then polymerase chain reaction for stool samples

عزل وتشخيص بكتريا Streptomyces المنتجة للمضادات الميكروبية من ترب بعض اقضية محافظة صلاح الدين == Isolation And Identification of Antimicrobial Producing “Streptomyces” From Soils of Some Districts In Salahaddin Province

Author name: هيام عزيز عباس البدري
Supervisor name: عبد الكريم فتاح عمر
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Salahaddin
First pages:
Abstract: تضمنت الدراسة عزل وتشخيص انواع تابعة للجنس Streptomyces، اذ جمعت 50 عينة من ترب اقضية تابعة لمحافظة صلاح الدين. شخصت?11 نوع من بكتريا Streptomyces باستخدام الاختبارات الشكلية والمزرعية والكيموحيوية حيث ظهر كل من الانواع (Streptomyces antibioticus, Strep | The Study involved ; isolation and characterization of species related to Streptomyces. Fifty samples of soil has been taken from different districts of Salah aldden province. The isolates were identified by the morphological, biochemical tests and classified to nine species, The following species were found : (Streptomyces antibioticus, Streptomyces coelicolor , Streptomyces distalicus and Streptomyces fluvissimus ) in Tikrit district, ( Streptomyces cyaneus ) in Ballad and beiji districs, ( Streptomyces exofolicus) in Ballad and Aldor districts (Streptomyces lavendulea ) in Samarra and Aldor districts , (Streptomyces purpureus ) in Samarra and Beiji districts and (Streptomyces violaceus ) in Samarra and Tikrit districts. The sensitivity of these bacterial isolates were tested toward the following : (Azithromycin, Cefotaxime, Cephatexin, Doxycycline, Erythromycin , Gentamicin, Neomycin, Penicillin, Tobramycin and Vancomycin).All species showed high resistance to cefotaxime. But all species were sensitive to neomycin and doxycycline. The isolated species of Streptomyces were tested for their ability of antibiotic production. It was found that (Klebsiella) was sensitive to all the species except species Streptomyces coelicolor. Streptomyces coelicolor showed an effect against Proteus. While Staphylococcus aureus was sensitive to the following species (Streptomyces antibioticus, Streptomyces cyaneus and Streptomyces purpureus). The Scanning Electron Microscopy was used to study the surface of spores. The species of (Streptomyces antibioticus) was found to has warty surface while spores of ( Streptomyces coelicolor) has smooth surface.

الاصابة ببكتريا Helicobacter pylori وعلاقتها بمرض تصلب الشرايين القلبية == Correlation Between Helicobacter Pylori Infection And Atherosclerotic Heart Disease

Author name: رواء سعدي سلمان
Supervisor name: مي خليل اسماعيل
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: مرض قصور الشرايين التاجية هو النتيجة النهائية لتراكم اللويحات العصيدية ضمن جدران الشرايين التاجية مسببة نقص الاوكسجين وبالتالي حدوث مرض القلب الاقفاري. ويعتبر من الامراض الشائعة واحد الاسباب الرئيسية لحالات الوفاة في العالم. اضافة الى عوامل الخطورة التقلي | Coronary artery disease (CAD) is the end result of the accumulation of atheromatous plaque within the walls of the coronary arteries resulting in shortage of oxygen supply and ischemic heart disease (IHD). It was consider as one of the most common diseases and major causes of worldwide morbidity and mortality. In addition to traditional risk factors for cardiovascular disease, nowadays, accumulating evidence indicates that a variety of infectious agents may contribute to pathogenesis of CAD. The present study evaluated the anti - Helicobacter pylori IgG and IgA and the role of virulence factor of H. pylori cytotoxin associated gene (Cag A) and vacuolating associated cytotoxin (Vac A) as a risk factors for CAD.Eighty patients were divided into 2 groups : first group was 70 patients with CAD, the other group contained 10 patients with another coronary artery disease; they were admitted to Ibn Al - Bitar Specialist Center for Cardiac Surgery in Baghdad between October 2013 and January 2014. Ten individuals used as a healthy control group. All blood samples were tested biochemically such as glucose test, urea test, creatinine test and lipid profile test(cholesterol, triglyceride, LDL and HDL) and all of them showed normal results. The present study revealed that males were affected more than females (3 : 1); with no relation between their ages and bacterial infection.Serum IgG and IgA was Estimated by indirect immunofluorescent (IIF) whereas Cag A, Vac A and high sensitive C - reactive protein (hs - CRP) measured by enzyme linked immunosorbent assay (ELISA) and compared to control group results.The incidence of the anti - H.pylori IgG was highly significantly prevalent in CAD patients 78.57% (55/70), than in control group 0% (0/10), also a high significant difference in another CAD patient group 100%(10/10) as compared to control group 0% (0/10) (P? 0.01).Similarly anti - H. pylori IgA in CAD patients and another CAD patient groups showed highly significant increase when compared to control group 37.14% (26/70), 30% (3/10) and 0% (0/10) respectively (P? 0.01).The incidence of the CagA - positivity was significantly prevalent in mean value (2.74±0.19) in patients with CAD and another CAD patient group(2.72±0.31) than in control group (1.64± 0.16) (P? 0.05). Same result was observed with Vac A antigen; mean value of patient group showed significant increase (1.299 ± 0.04) when compared to controls group (1.41±0.13) (P? 0.05). Also significant increase found between another CAD patient group(1.79±0.17) and control group (1.41±0.13) (P? 0.05). Furthermore; the present study revealed significant differences of concentration levels between hs - CRP in CAD patient group (4.95 ± 0.38 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml), as well as a significant differences found between another CAD patient group (3.96 ± 0.96 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml) (P? 0.05).

دراسة بكتريولوجية لبعض الاجناس البكتيرية السالبة لصبغة غرام المقاومة لمضادات البيتالاكتام والمعزولة من اخماج المجاري البولية في محافظة ديالى == Bacteriological Study of Some Genus For Bacterial Gram - Negative Resistant To ? - Lactam, Isolated From Urinary Tract Infections In Diyala Province

Author name: محمد خضير عباس النعيمي
Supervisor name: عباس عبود فرحان الدليمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: Arabic
University location: Diyala
First pages:
Abstract: شملت الدراسة 300عينة جمعت من مرضى مصابين باخماج المجاري البولية وتم جمع العينات في مدينة بعقوبة من مستشفى البتول للولادة والاطفال ومستشفى بعقوبة التعليمي، للمدة بين 1/9/2013ولغاية1/1/2014.اظهرت نتائج الزرع البكتيري على اوساط اكار الماكونكي واكار الدم ووس | Three hundred urine from patients suffering from urinary tract infection from Baaquba Teaching Hospital and Al - Batool Hospital in Baaquba city for the period from 1/09/2013 to 1/01/2014. The results reved that 66 isolates are belonging to bacteria of Gram negative (57.4%), 25 (37.78 %) Escherichia coli, 22(33.33%) Proteus mirabilis, 9(6.06%)Klebsiella pneumonia, 5(7.57%) Enterobacter spp for 4 (25%) Enterobacter cloacae and 1(5.51%) Enterobacter aerogenes and5(7.57%) Pseudomonas aeruginosa by using diagnostic phenotypic, biochemical tests and confirm the diagnosis using regular aPI20E. Investigation of some virulence factors showed that both Escherichia coli and Proteus mirabilis produced haemolysin 52% and 90.9% respectively. The production of biofilm by local isolates was detected in Congo - red way, Isolates of Escherichia coli and Proteus mirabilis had been shown the ability to produce biofilm 92% and 90.9% respectively. The results showed that all isolates of Proteus mirabilis produced urease by 100%, while the results detect that the isolates of Escherichia coli not able to produce this enzyme. Proteus mirabilis showed ability to produce swarming with 100%. Siderophore production by Escherichia coli and Proteus mirabilis was 48%, 9% respectively. Eschrichia coli, and Proteus mirabilis produced bacteriocin with percentag of 32% and 50% respectively.The production of ? - lactamase by Eschrichia coli and Proteus mirabilis was 60% , 40.9% respectively, also the isolated had the ability to produce the Extendended spectrum ? - Lactamase enzyme by using disc Approximation, The production from each ofEschrichia coli and Proteus mirabilis 12%, 31.8 % respectively. Results of Metallo? - Lactamase by using the Imp - EDTA combination indicated that E.coli and P.mirabilis were 12% and 13.6% respectively. Isolates of E.coli showed highest resistance rate 92% for Augmentin while isolates of P.mirabilis showe higher resistant to cefotaxime 81.8%. The results showed that multiple resistance pattern for antibiotic 43 (91.5%) resistant to (2 - 5) antibiotics, Isolates of E.coli showed highest multiple resistance rate 92% while isolates of P.mirabilis rate 90.9%. The Minimal inhibitory concentration (MIC) for namely two antibiotics Cefotaxime, Ceftazidime were determined.MIC values of these antibiotics ranged between (2 - <1024), (4 - <1024) µg\ml E.coli and (2 - <1024), (8 - <1024) µg\ml P.mirabilis respectively. The results of molecular detection of ESBL genes (bla TEM and bla SHV) by using PCR technique, (9) samples from (10) total, divided into 3(100%) E.coli and 6(85.7%) P.mirabilis were harboring bla TEM gene based on the presence of 950 bp bands in 1% agarose gel. while results detect that the isolates of Escherichia coli and Proteus mirabilis not harboring bla SHV gene.

تحديد الصفات المظهرية والوراثية لانواع بكتريا المكورات المعوية المعزولة من المرضى في محافظة النجف الاشرف == Phenotypic And Genotypic Detection of Enterococcus Sp. Isolated From Patients In Al - Najaf Al - Ashraf Governorate

Author name: زهراء حميد عودة القريشي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: The study aimed to isolate and identify the Enterococcus spp. from different clinical specimens and study the virulence factors of predominant species, as well as detected the virulence factors encoding genes such as efaA (endocarditis - associated antigen), esp (enterococcal surface protein), eep (stimulating of pheromones expression) and enlA (enterolysin A) genes by PCR techniques.There were three hundred clinical specimens collected from patients suffering from different clinical infections during the period from September 2013 to January 2014 in AL - Sadder Medical City and AL - Hakem General Hospital. The identification of the Enterococcus spp. isolates were depended on colonial morphology, microscopic examination and biochemical tests as a primary identification. The final identification was performed with the automated VITEK - 2 compact system using Gram positive - Identification (GP - ID) cards.According to the results obtained by the VITEK tests forty two clinical isolates of Enterococcus were detected, which distributed into : (22) isolates from urine, (8) vaginal swabs, (6) seminal fluid, (4) throat swabs and two isolates from wound swabs with no isolates from cerebral spinal fluid, stool and blood specimens.This study revealed that the E. faecalis is more distributed with 25(59.52%), followed by E. faecium with 10 (23.80%), E.avium with 5 (11.90 %), E. durans and E. raffinosus with 1(2.39%) for each.The study investigated the virulence factors of E. faecalis, E.faecium and E.avium, which play a major role in enterococcus pathogenicity. E. faecalis and E.faecium had the ability to producecapsule, gelatinase, biofilm, adhesion, protease, bacteriocin, haemolysin and cytolysin except ? - lactamase produced only by E. faecalis while E.avium produced all these virulence factors except gelatinase, bacteriocin and cytolysin.The results revealed variation in the resistance of bacteria to antibiotics, E.faecalis express absolute resistance (100%) to Erythromycin, high resistance against Gentamycin, Tetracyclin and Vancomycin but high susceptibility to Ciproflaxacin and Penicillin and moderate susceptibility to Chloramphenicol. E.faecium exhibited absolute resistance (100%) to Erythromycin, Gentamycin and Tetracyclin, high resistance against Chloramphenicol, Penicillin and Vancomycin but high susceptibility to Ciproflaxacin while E.avium exhibited susceptibility (100%) to all these antibiotics except Tetracyclin showed absolute resistance.Then detected the virulence factors encoding genes : efaA, esp, eep and enlA genes by using PCR techniques and Electrophoresis Systems.Finally, The genotypic method. Regard to genotypic study the outcome showed that 21(84%) isolates of E.faecalis, 4(40%) of E.faecium and 5(100%) of E.avium were carrying efaA gene and 17(68%) of E.faecalis, 5(50%) of E.faecium, 5(100%) of E.avium were carrying esp gene while eep gene was carrying only by E.faecalis and E.faecium ; 12(48%) and 3(30%) respectively. Also the results revealed that only 1(4%) isolates of E.faecalis have enlA gene.

التحري الجزيئي للجزر الوراثية المسؤولة عن المقاومة للمضادات الحياتية في العزلة baumannii A92 Acinetobacter == Molecular Detection Of Genomic Islands Responsible For Antimicrobial Resistance In Acinetobacter Baumannii Strain A92

Author name: سهاد سعد محمود العجيلي
Supervisor name: اليس كريكور ملكونيان | علي حسين ادحيه
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
University: University of Baghdad
Language: English
University location: Baghdad
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مقارنة الطرائق التشخيصية الوسط اللوني Chromogenic mediumوالانتشار بالاقراص DisK Diffusion المتسلسل PCR للكشف عن المكورات العنقودية الذهبية المقاومة للمثيسيلين في الردهات الجراحية في مدينة الناصرية == Comparison Of Chromogenic Medium, Disk Diffusion Test And Pcr Methods Forthe Detection Of Methicillin Resistant Staphylococcus Aureus (MRSA) In The Surgical Wards Of Al - Nasiriyah City

Author name: جواد رشید هویدي الزیدي
Supervisor name: امین عبد الجبار السلمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Basrah
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دراسة فسلجية لبعض انواع من جنس Bacillus المقاومة للمعادن الثقيلة وتحسين قابليتها الاصحاحية == Physiological Study Of Some Bacillus Spp. Resistant To Heavy Metals And Improving Their Ability Of Bioremediation

Author name: ایمان عبعوب مخیفي
Supervisor name: امین عبد الجبار السلمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Basrah
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عزل وتشخيص جرثومة Helicobacter pylori من مياه الصرف الصحي في محافظة البصرة باستعمال الطريقة الزرعية وتقنية ال CR ( 16S rRNA ) == Isolation And Identification Of Helicobacter Pylori From Sewage In Basrah Province By Culture Method And PCR (16S Rrna)

Author name: الاء يعقوب الربيعي
Supervisor name: امين عبد الجبار السلمي | اسعد محمد رضا الطائي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Basrah
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