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تاثير الصبغات الحيوية في مكونات الجدران الخلوية للبكتيريا المعزولة من المرضى المصابين بالاكزما الجلدية

اسم المؤلف: زينب عويد شاطي
اسم المشرف: سوسن حسن عثمان كورجي
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: • جمعت 100 مسحة جلدية خلال الفترة من تشرين الاول 2013 لغاية اذار 2014 من المرضى الذين يعانون من الاكزما الجلدية من مستشفى الامام علي ومستشفى الشهيد الصدر في العاصمة بغداد والذين كانت تتراوح اعمارهم بين (5اشهر - 70 سنة) ,من مجموعهم كانت (72 %) موجبة الزرع البكتيري ,و( 38%) سالبة للنمو . وقد اظهرت النتائج التالي : • ان كلا الجنسين يتاثر بالاكزما ,مع ارتفاع النسبة لدى الاناث 57% على الذكور 43% ضمن الانواع المختلفة للاكزما .• ان اعلى ارتفاع للاكزما كان ضمن الفئة العمرية 5اشهر - 9 سنوات ( 45 %) ,متبوعة بالفئة العمرية 30 - 39سنة كانت( 14 %) بينما اقل نسبة (5%) كانت ضمن الفئة العمرية 20 - 29 سنة .• الاكزما التلامسية كانت اعلى نسبة للانتشار(57 %) , يليها الاكزما الولادية بنسبة ( 35 %) والاكزما القرصية( 5%) بينما الاكزما العصبية كانت (3%).• من مجموع 100 مريض يعاني من الاكزما في جميع مجاميع الدراسة ,ظهرت Staphylococcus aureusباعلى نسبة 20عزلة (57.14%) ,تليهاStaphylococcus haemolyticus بسبع عزلات ( 20%)Pseudomonas, fluorescens, خمس عزلات (14.28 %) ,وعزلتان لبكتريا Enterobacter aerogenes ( 5.7%) وعزلة واحدة لبكتريا Staphylococcus warneri (2.8%) .• اختبرت العزلات البكتيرية للمضادات الحيوية.• P. fluorescens كانت مقاومة 18 مضاد حيوي وحساسية لمضادي ( neomycin ,(nitrofurantoin, حيث اظهرت العزلات مقاومة 100 % لمضادات (lactams,erythromycin ,azithromycin ,oxacillin ,trimethoprimβ) ومقاومة 50 % لمضادات (levofloxacin ,rifampicin ,norfloxacin )• E. aerogenes قاومت مضادات البيتالاكتام بنسبة 100 % ,وكانت حساسة بنسبة 100 % لمضادات المجموعة الامينوكلايكوسيدية ((Amikacin ,gentamicin ,بينما اعطت مقاومة متوسطة لمضاد neomycin .• S.aureus قاومت 11 نوع من المضادات الحيوية وحساسة لثمانية انواع من المضادات ,بينما S.haemolyticus مقاومة 15 نوع من المضادات وحساسة لاربع انواع ومتوسطة لمضاد levofloxacin. وذلك يختلف عن S.warneri الحساسة 14 نوع من المضادات ومقاومة لخمسة انواع ومتوسطة لمضاد Oxacillin .• اختبرت قابلية البكتريا على النمو بوجود تراكيز مختلفة من الصبغات الحيوية (الصبغات الحيوية التي استخدمت الكرستال البنفسجية والمثيل الحمراء والمثيلين الزرقاء) مما سمح بتحديد التركيز المثبط الادنى للصبىغات ,فكان التركيز المثبط الادنى للمثيلين الزرقاء على S. haemolyticus , P.fluorescens بلغ 1ملغ\مل بينما على S .warneri , S .aureus 10 ملغ\مل ,بينما التركيز المثبط الادني للمثيل الحمراء كان 1 ملغ \مل لكل الانواع البكتيرية , التركيز المثبط الادنى للكرستال البنفسجية كان 0.1 ملغ\مل لكل الانواع ماعدا S.warneri التي كان التركيز المثبط لها 1ملغ\مل .• اظهرت البكتيريا السالبة لكرام اقل مقاومة للصبغات من البكتيريا الموجبة لكرام والصبغة المتعادلة ابدت تاثير اكثر من الصبغة الحامضية والقاعدية عند نفس التركيز , وسمحت الصبغة القاعدية بنمو البكتريا الموجبة لكرام بينما ثبطت السالبة لكرام .• اظهرت دراسة تاثير الصبغات على عوامل الضراوة للعزلات البكتيرية عدم تاثرانتاج الكبسولة ولكن تم تثبيط عوامل الالتصاق للعزلات البكتيرية بواسطة الصبغات , بينما استطاعت المعاملة بالصبغات اختزال قابلية العزلات البكتيرية على تكوين الغشاء الحيوي ,كذلك تناقصت القابلية العالية للعزلات البكتيرية على التلازن مع اللاكتين المستخلص من الخلايا الطلائية بعد المعاملة بالصبغات الحيوية .• استخدمت طريقة المطياف الضوئي لدراسة تاثير الصبغات على نفاذية غشاء الخلية فكانت الزيادة في امتصاص الاشعة فوق البنفسجية لعينات الخلايا دليل على تحلل الخلايا بتاثير الصبغات الحيوية.اذ كشفت النتائج ان الموقع الهدف لتاثيرالصبغات الحيوية هو غشاء الخلية .• استخلص عديد السكريد الدهني من بكتريا P.fluorescens ,وهو احد مكونات الجدار الخلوي ,وتمت دراسة تاثير الصبغة الحيوية على كمية الدهن والسكريد في عديد السكريد الدهني .اذ اظهرت النتائج مستوى عالي للدهن في النموذج غير المعامل بالصبغة 79.33 % ملغ\مل , بينما تناقص مستوى الدهن الى 45.8% ملغ\مل بعد المعاملة بالصبغة , اما كمية السكريد في عديد السكريد الدهني في النموذج غير المعامل بصبغة المثيل الحمراء كانت 123.4% ملغ\مل والتي انخفضت الى 74.2 % ملغ\مل في نموذج عديد السكريد الدهني المعامل بالصبغة . | • One hundred Skin swabs samples were collected during the period from November 2013 to March 2014 from patients suffering from eczema at Al - Sadder hospital and Al - Imam Ali hospital in Baghdad Province . A total of (72%) gave positive cultures ,while (28%) showed negative cultures and the results showed the following : • Both genders were suffering from eczema , with dominance in females (57%) comparable to males (43%) within variable type of eczema.• The highest incidence of eczema was found in age group five months to 9 years (45%) ,followed in the age group (30 - 39) years (14%) , while the lowest percentage (5%) is in age group (20 - 29) years .• Contact dermatitis is the highest percentage of incidence (57%) followed by Atopic dermatitis (35%) and Discoid dermatitis (5%) ,while the lowest percentage is for Neuro dermatitis (3%) .• Out of the one hundred patients with eczema in all study groups , results showed that Staphylococcus aureus isolated at a highest percentage 20 (57.14%), followed by Staphylococcus haemolyticus seven (20%), and Pseudomonas fluorescens five (14.28%) and two isolates of Enterobacter aerogenes (5.7%) ,and one isolate of Staphylococcus warneri(2.8%).• Pseudomonas fluorescens were resistance for 18 antibiotic ,and sensitive to only two antibiotics (Neomycin and Nitrofurantoin ) .The isolates were resistant 100% to β lactams antibiotics ,augmentin ,erythromycin, azithromycin ,oxacillin ,while resistance 50% to levofloxacin ,rifampicin, norfloxacin ,and ciprofloxacin .• Enterobacter aerogenes isolates were resistant to βLactam antibiotics (100%) and appeared sensitivite to Aminoglycosides Antibiotic (amikacin ,gentamicin) in 100% percentage ,but gave intermediate resistance to neomycin .• Staphylococcus aureus isolates were resistant to 11 type of antibiotics and sensitive for eight . While Staphylococcus haemolyticus isolates were resistant to 15 type of antibiotics and sensitive to four and intermediate to Levofloxacin .And that differ from Staphylococcus warneri isolates which sensitive to 14 type of Antibiotics ,while resistant to only five antibiotics ,and intermediate to only Oxacillin. • Testing ability of Bacterial isolates to growth in presence different concentration of biostains (the biostains used are Crystal violet , Methylene blue and Methyl red ) allowed to detecting the sub MIC. the MIC of the methylene blue against S. haemolyticus and P.fluorescens were (1) mg/ml, while against S .warneri and S.aureus were (10) mg/ml ,and the MIC of the methyl red was (1) mg/ml against all type of these isolates , while the MIC of crystal violet against all these isolates were (0.1) mg/ml except against S. warneri was (1) mg/ml .• Studying the effect of biostains on virulence factors for bacterial isolates appeared their were'nt any effect for these biostains on capsule production in these isolates ,and inhibition of adherence factor for these isolates by the stains ,while the treating of bacterial isolates with biostains could reduce the ability of these isolates for forming biofilm ,and the highly ability of these isolates which isolated from eczema patients to agglutinated with the lectin extracted from epithelial cells. But the percentage of agglutination decrased due to the treatment with biostains . • Spectrophotometric method is used to investigate the effect of biostains on cell permeability ,the results revealed that the target of biostains is the cell membrane.• Extracting lipopolysaccharide from Pseudomonas fluorescens which is one of the component of cell wall ,and studying the effect of biostain on the quantity of lipid and sugar, The results showed high level of lipid 79.33mg/ml in sample which not treated with biostain , while the lipid level decreases to 45.8 mg/ml when treated bacteria with the stain, as well as the quantity of sugar in lipopolysaccharide was high in sample not treated to biostain 123.4 mg/ml but decreased to 74.2 mg/ml when sample treated with methyl red stain.

التحليل لبعض عوامل الضراوة لبكتريا Pseudomonas aeruginosa المعزولة من مصادر التليف الحوصلي وغير التليف الحوصلي

اسم المؤلف: ايمان ثامر جار الله
اسم المشرف: سوسن ساجد محمد علي الجبوري
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: This study concerned with illustration the molecular pattern of virulence genes in P. aeruginosa isolated from cystic fibrosis (CF) and compared them with those of none CF isolates (different nosocomial infections). The study involves the following steps : · Twenty - six isolates of P. aeruginosa were obtained from patients submitted to Baghdad hospitals/Iraq during the period between July 2013 until December 2013. These isolates were distributed as 6 isolates from blood, 4 isolates from urinary tract infections andsputum (for each), 3 isolates from wounds and ear infections (for each), 2 isolates from bronchial wash of patients suffering respiratory tract infection beside 4 isolates from cystic fibrosis patients. · The isolates were initially identified by culturing on MacConkey agar and P. aeruginosa agar then diagnosed by performing some morphological and biochemical tests. The second diagnoses was done by api 20NE system followed by Genotypic diagnoses usingpolymerase chain reaction (PCR) depending on a housekeeping gene rpsl gene (amplified size was 201bp). The results revealed that all the 26 isolates were P. aeruginosa.· Genotypic detection of many virulence factors related to P. aeruginosa was performed using conventional PCR. They included : gene coded for exoenzyme S (exoS, 504bp), exotoxin A (toxA, 352bp), two phospholipases C encoded by (plcH, 307bp) and (plcN,466bp), alginate (algD, 1310bp), (lasB, 300bp), putative silidase (Pseudoaminidase, 1500bp) and Neuraminidase (nan1, 1316bp). · The results revealed that the most frequently gene was exoS when it was detected in 21/26 (80.7%) and distributed between 19 in different clinical source and 4 in CF samples. For toxA the rate was 19/26 (73%) and all CF isolates were positive to this gene as with exoS. The percentage of other genes were, plcH 13/26 (50%), plcN 18/26 (69.2%), algD17/26 (65.3%) {All CF isolates were positive}. For lasB gene it was detected in 8/26 (30.7%), sialidase (Pseudoaminidase) in 4/26 (15.38%) isolate, one of source was CF and the others distributed between bronchial wash and ear infections. The last gene was nan1 and only one CF isolate 1/26 (3.8%) harbored this gene.· DNA sequencing and phylogenic analysis for exoS, toxA, plcH, algD, nan1 and sialidase (Pseudoaminidase) genes were done using Pairwise alignment and Tamura - Nei genetic destine model, UPGMA (Un weighted Pair Group Method with Arithmetic Mean) tree build, respectively. Results of DNA sequencing for exoS and toxA genes revealed that most isolates display different point mutation as compared with the NCBI data. Point mutation type transversion was detected in residue no. 17 base 52 in P. aeruginosa exoSBW1 isolated from bronchial wash causes alteration of Thyamine to Adenine and conversion of Leucine residue to Glutamine. Another point mutation type transition occured in exoSB1, exoSU1 and exoSCyF1 in residue no. 18 base 55 when Guanine converted to Adenine cause conversion of Serine residue to Asparagine. P. aeruginosa exoSB3 and exoS CyF2 isolated from blood and cystic fibrosis, respectively, showed high similarity made them segregate within the same group or clone, while exoSU2 and U3 were within the same clone but neither with exoS U1 nor U4. · Another point mutation was detected in P. aeruginosa toxA CyF2, when nitrogen base Guanine no. 36 residue 12 was changed to Adenine causes conversion of Arginine to Histidin. Also mutation occur in toxA - CyF1, 2, 3, 4, toxA U1, 2, 3, 4 and toxA BI, BW1 whennitrogen base Adenine no. 132 residue 44 was converted to Guanine causes the conversion of Threonine to Alanine. Such difference may explain the diversity of virulence in some isolates.· DNA analysis for plcH was performed to amplified fragment related to CyF3. The identity of Pairwise alignment with the origin gene related to NCBI was 100% and no mutation was detected. · For algD, result revealed that a point mutations were detected in many residuse but the interest finding is that all of these mutations were silent specially in CyF2, since it didn’t change amino acid sequence, while the mutation that was delectated in P. aeruginosa algD Ear1 causes alteration in amino acid sequence when nitrogen base Guanine no. 388 residue 130 was converted to Adenine thus the conversion of Glycine to serine. The percentage of Pairwise identity was 95.4% which represent the percentage of identical residues in the alignment including gap and non gap residues .· For nan1 gene, many mutations were noticed in this amplified fragment but some of them were silent while others were defective cause alteration in frame translation in many residues. · DNA sequence for silidase (Pseudoaminidase) gene related to P. aeruginosa CyF3 and Pairwise alignment for this gene was performed (forward and reverse sequences data). The data was compared with control obtained from NCBI gene bank. The identity was 82% with some gaps occur in identity due to differences in base pair sequence as a result from changing some nitrogen bases. Most of these mutation were silent mutation after translated to amino acid. Others were not.· From all above results, it could be said that some isolates displayed highly virulence pattern specially in CF isolates as compared with non - CF isolates. P. aeruginosa was unique in harboring all the detected virulence genes and most of them were mutant.

دراسة لتكوين الغشاء الحيوي لبكتريا Escherichia coli وProteus mirabilis المعزلة من اصابات المسالك البولية في محافظة النجف الاشرف == Study of Biofilm formation of Escherichia coli and Proteus mirabilis isolated from urinary tract infection in AL - Najaf Al - Ashraf governorate

اسم المؤلف: رسل عيدان محسن
اسم المشرف: سهام جاسم محسن
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: النجف
الصفحات الاولى:
المستخلص: The aim of this study is to inferring the ability of biofilm production and virulence factors which has helped to form it into two types of bacteria P.mirabilis and E.coli. Two hundred and fifty samples have been collected from patients who are suffering Urinary tract infection (UTI) in Teaching Hospital at Al - Najaf Al - Ashraf during the period ( 1/10/2014 - 1/1/ 2015). The samples have has identified by diagnostic methods : culturing , microscopic , biochemical and using VITEK - 2 compact system more sensitively and specifically method.The results have been showed that the isolation ratio was 30 (37.5%) of E.coli, while P.mirabilis was 14(17.5%) also, a five isolates (6.5%) wereEnterobacter cloacae ssp cloacae and only two isolates (2.5%) were Raoultella ornithinolytica from the total number of specimens. The virulence factors and antibiotic sensitivity test of two bacteria : P.mirabilis and E.coli were determined and the more virulence and multidrug resistance were selected.The hemagglutination properties of P.mirabilis which isolated from clinical samples were determined , the reaction with red blood cells of human group O+ was explored. The ratio of Hemagglutination was reached 42.86%, 50%, 7.14% to MSHA, MRHA and NOHA respectively. However, E.coli has been a different results that was reached 30 % , 26.67% and 43.33% from type MSHA, MRHA and NOHA as well. On the other hand, the thin - film production (pellicle) has been formed by 13 isolates of bacteria P.mirabilis and 21 isolates of bacteria E.coli, when it was growth on the nutrient broth in a temperature 37˚C for 24 - 18 hours. Moreover, it has been shown that there is high affinity for adhesion with the epithelium cell in the urinary tract. In addition, the E.coli has proved the higher efficiency than P.mirabilis in adhesion. It was detected ability of bacteria to biofilm production in three methods. The bacteria E.coli have showed their ability on biofilm production where by the rate was (43.3, 52 and60)% on the different growth ways which was the Congo Red, the tube and the plate respectively.The gel electrophoresis has been done on all isolates which was to analyzed on adhesive factors genetically whereby the bacteria P.mirabilis, E.coli have shown ability to gene expression (fimH and afaB) with a rate of (42.86 and 28.57)% and (30 and 20)%, respectively.Also, it has been clarified that the antibiotics ( Ciprofloxacin, Amikacin and Ceftazidime) have an effect on the most virulent bacteria to prevent the formation of biofilm when it is taken a half of minimum inhibitory concentrations. It was found that the minimum inhibitory concentrations were the most efficient in the prevent a biofilm formation in both types of bacteria.It appears to be found that the minimum inhibitory concentrations of these antibiotics were the most efficient in the prevent the formation of biofilm in both types of bacteria. Ciprofloxacin has the high efficiency to prevent the biofilm formation in E.coli while this concentration has no effective on biofilm production from others. It has been found that there is a clear positive relationship between the presence of adhesion gene (fimH , afaB) and the ability to adhesion on the epithelial .The conjugation process was conducted successfully to transfer the adhesion genes between (E.coli and P.mirabilis) which have been considered a donor strains to transfer the genes to the standard strain E.coli HB101 which have been considered a receipt strains whereby have shown ability to adhesion and biofilm formation.

دراسة مسحية للبكتريا المرتبطة بالتهاب الزائدة الدودية وتحديد الحالة النسجية للمصابين في محافظة البصرة == Survey of bacteria associated with appendicitis and determination of Histological patient state in the province of Basrah

اسم المؤلف: هدى عبد الرحيم مذكور
اسم المشرف: محمد عبد الامام احمد | نوري حنون جاسم
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: البصرة
الصفحات الاولى:
المستخلص: The current study has been done to determined pathogenic bacteria that associated with appendicitis .This study includes ninety samples of removal appendix taken form patients who cleared diagnosed as appendicitis infection by specialised doctors in general Basrah hospital and Al - Sadir teaching hospital for the period between September - 2013 and June - 2014.Distribution of appendicitis appear in all age groups, 10 - 20 year and 20 - 30 year were the most infected, as well as the infection appear in both gender, but rate of infection in male was relatively higher than female 68(59%), 47(41%) respectively. The ratio of the city's population has overcome the rural population 96(83.5%),19 (16.5%) respectively. The percentage of samples that gave positive culture was 80( 88.9%), while 10 (11.1%) of these samples negative culture. The study reveals 15 different bacterial isolation, the most common bacteria was Escherichia coli 80(44.9%) while other species was appears in less percentage Shigella dysenteria 14(7.9%), Salmonella enterica typhi 10( 6.5 %), Pseudomonas aeruginosa 8( 5.6 %) , Klebseilla Pneumonia 6(4.3%) , Klebseilla oxytoca 3(1.7%), Morganella morganai 7 ( 9.3 %) Neisseria spp. 6 ( 9.5%) , Enterobacter cloaca 4 ( 2.2 %) ,Serreatia spp. 3 )7.1 %(, Citrobacter ferundii 2 (7.7%) Proteus vulgaris 7) 6.5 %( Staphylococcus spp. 14(1.3%), Streptococcus spp. 72(5.1 %) and Bacillus subtilis 8)5.6 %(. Laboratory diagnosis for blood samples included estimated of total WBCs and found that (31%) of patients have natural WBCs values while the other patients have high values.Antibiotic sensitivity test to E.coli isolates towards 20 antibiotics because she is the most common bacteria showed that all isolates were resisted for most antibiotics which used in test especially for β - lactam group, and the isolates of E.coli were multi resistance for antibiotics.Identified minimum inhibitory concentrations MIC for some antibiotics The results showed that E.coli bacterial isolates's 30 isolation have shown resistance to anti AMO as MIC values ranged from 128 - 1024 Mcgm / ml while the MIC for Anti AMP values between 4 - 128 Mcgm / ml, As for antibiotics and Cefixim , Ceftriaxone, Cefotaxime, and it was her MIC values ranging between (1 - 128) Mcgm / ml Plasmid profile of E.coli isolates investigated to study the correlation between plasmid profile and antibiotic resisitant marker and results from agarose gel electrophoresis revealed that all E.coli isolates contain one plasmid band.This study includes the detection of some genes that encode to beta - lactamase enzymes in E.coli which were responsible about multi antibiotic resistanc and these genes loaded on plasmid DNA for ten isolaes and found that 5(50%) from isolates have blaTEM gene and 5 )40%( have blaCTX gene and 1(10%) have blaSHV gene. This study also considered note the general appearance of appendix samples , some of them are enlarged and surrounded by vesicles, some with fibrous walls and ulcerated with mixed colors, then examined the histological changes it, the study showed changes in histological structure of the excess was extensively congestion of blood vessels, veins in serosa and subserosal layers and increased the amount of diffuse lymphoid tissue in the layers of the appendix walls.

دراسة وبائية وجزيئية للجرثومة Escherichia coli O157 : H7 المعزولة من عينات سريرية وبيئية في محافظة البصرة - العراق == Epidemiological and molecular study of the bacterium Escherichia coli O157 : H7 isolated from clinical and environmental samples Basra Governorate / Iraq

اسم المؤلف: عباس ضرب شعبان
اسم المشرف: ميثم ايوب عبد القادر الحمداني
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: البصرة
الصفحات الاولى:
المستخلص: A total of 464 clinical and environmental samples attempt to isolate Escherechia coli O157 : H7 serotype were collected, of which 183 stool samples from diarrheal children at Al - Qurna hospital and Al - Medaina Hospital of children during the period between October 2013 - August 2014. Environmental samples (281) : 121 samples of drinking ( tap) water , 80 samples of river water , and 80 samples of sewage water (collected from different regions of Basra Governorate) . All samples was tested and detected the presence of Escherichia coli serotype O157 : H7 using chromogen agar and ( CT - SMA ) as selective media and using direct immunological testing for direct identification of the pathogen (Certeste) for clinical samples.The study revealed the isolation of 56 isolates of E.coli O157 : H7 at a rate of (12.06%) : 16 clinical isolates at a rate of (8.7%), 40 environmental isolates at a rate of (14.23) : 9 isolates from drinking water at a rate of (7.4%), 18 isolation from sewage at a rate of (22.5), and 13 river isolates at a rate of (16.25).Antibiotic susceptibility testing toward 20 antibiotic of E.coli O157 : H7 isolates showed that all isolates from all sources resistant to the antibiotics Ampicillin, Amoxacilllin, , Rifampin and Piperacillin while showed high sensitivity to antibiotics amikacin, Kanamcin, ciprofloxacin and norfloxacin.The clinical isolates of E.coli O157 : H7 showed multiple high antibiotic resistance index Muliple Antibiotics Resistance (MAR index) ranged between (0.25 - 0.8), Where two isolates showed a resistance to sixteen antibiotics, Two isolates showed resistance to twelve antibiotics, Two isolates showed a resistance to eleven antibiotics, one isolate showed a resistance to ten antibiotics,Three isolates showed a resistant to nine antibiotics and two isolates showed aresistance to eight antibiotics, One isolate showed a resistant to six antibiotics and two isolates showed resistance to five antibiotics.The environmental isolates of E.coli O157 : H7 showed less resistance ranged between (0.25 - 0.75) for samples of sewage and (0.35 - 0.50)rivers samples , and (0.30 - 0.55)tap water samples . As shown, one isolate resistant to fifteen antibiotics, one isolate showed a resistance to thirteen antibiotics and four isolates showed a resistance to ten antibiotics from sewage. As for rivers Tow isolates showed a resistance to ten antibiotics, three isolates showed a resistant to nine antibiotics while a one isolate of tap water showed a resistance to eleven antibiotics, three isolates showed a resistance to ten antibiotics and an one isolates showed a resistance to nine antibiotics and two isolates resistant to eight antibiotics.Investigating about the content of plasmid in isolates E.coli O157 : H7 to study the relationship between the plasmid content as an indicator of antibiotic resistance, as the results showed that most of the isolates E.coli O157 : H7 four clinical isolates containing the plasmid including one molecular weight > 10kbp with a Patterns of multiple different resistance,also two isolates contain three plasmids of a molecular weight > 10kb. And one isolate containing four plasmids with molecular weights ranging from (4 - 10Kb) and one isolate containing five plasmids resistant to sixteen antibiotics with molecule weights ranged between >(2 - 10Kb).The isolates E.coli O157 : H7 isolated from the environment , sixteen isolates showed that they contain plasmids of molecular weights> 10kb , one isolate contains two plasmids of molecular weights ranging between (4 - 10Kb), five isolates containing three plasmids of molecular weights ranging from (2.9 - 10) Kb and two isolates containing four plasmids of molecular weights ranging between( 2 - 10 Kb

انتاج وتوصيف متعدد السكريات الخارج خلوي Lactobacillus plantarum من بكتريا Exopolysaccharide المعزولة محليا ودراسة فعاليته البيولوجية == Production And Characterization of Exopolysaccharide (EPS) From Locally Isolated Lactobacillus Plantarum And Studying Its Biological Activity

اسم المؤلف: بيداء مهدي عباس الغانمي
اسم المشرف: ناجح هاشم كاظم الظويهري
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: كربلاء
الصفحات الاولى:
المستخلص: Twenty - five isolates of Bacillus spp. Were isolated from 15 soil samples collected from different places in the Holly city of Kerbala, 13 isolates lactobacillus spp. Were isolated from 15 milk products and 7 isolates pseudomonas spp. The isolates were screened for their ability to produce Exopolysaccharide.The results showed that isolate number 3 (Lactobacillus lac 3) was found to give the highest production of the polymer, the isolate has been identified as lactobacillus plantarum. The optimal cultural and environmental conditions for EPS production were been identified which include using the production medium (simplified synthetic medium) containing date juice (5%) as a carbon source and yeast extract (0.2%) as a nitrogen source, the media was enhanced with a total concentration 0.9% of magnesium sulphate and potassium phosphate as mineral salts. The primary pH was adjusted to 6.5 and the inoculum size was 3%(v/v), isolates were grown under anaerobic condition at 35 Co for 24 h and the EPS extracted with ethanol 95%. Two steps were used for partial purification of the polymer as follows, the first step by using TriChloroAcitic acid (TCA) solvent and the second step by dialysis. The yields were (77.4 and 63.8)% for the two purification steps respectively. The biological activity of the EPS extraction from L. plantarum has been tested against some species of G+ve and G - ve bacteria and some fungal. The results showed that EPS extrac exhibits an inhibitory activity against Stenotrophomonas, Bacillus cereus and Proteus bacteria with an inhibition zone diameter of 23, 21, 19 mm respectively. While, there was no inhibitory effect against fungi. Antioxidant activity has also been tested, where IC50 value against ABTS free radical at 100 Mg / ml. The characterization of partially purified EPS is investigated by using Fourier Transform Infrared Spectroscopy (F.T.I.R). The molecular weight of the polymer was also measured by using viscometer and the molecular weight obtained by this technique was 2.3 *105 Dalton. The EPS extraction from selected isolate showed two spots when separated by Thin Layer Chromatography (TLC) which is analyzed as a glucose and galacto

انتشار بكتريا Escherichia coli في المرضى في المرضى المصابين بالتهاب المرارة الحصوي في محافظة الديوانية == Dissemination of Escherichia Coli In Patients With Cholecystitis Calculus In Al - Diwanyia Governorate

اسم المؤلف: احمد رزاق واجد الداوودي
اسم المشرف: سيوف خومان علوان الرماحي
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: القادسية
الصفحات الاولى:
المستخلص: The study aims to identify Escherichia coli bacteria, which causes calculus cholecystitis of molecular perspective. The study samples were gathered from 110 patients who undergone cholecystectomy in Diwaniya general hospital for the period October 2013 to April 2014. The sample included bile sap, gall bladder tissues and stone if available. The samples were cultured to identify their culture specifications.The results showed that chronic cholecystitis is the most common one, which has 55.5% then acute cholecystitis by 44.5%. The study results showed that age and sex have an influence on cholecystitis. The highest percentage of infection is the ages 36 - 45 for the two sexes. If the cases distributed according to the patient sex, there is a difference in cholecystitis between male and female, where females infections are 88.2% and males are 11.8%. The total isolated bacteria were 125 bacterial isolates of 52% of gall bladder tissues, 26.4% of bile and 21.6% of the stone. Escherichia coli had 34.4% of the total samples of 51.1%, 36.6% and 29.6% respectively of the above mentioned samples.As far as susceptibility for all Escherichia coli isolates towards 15 types of antibiotics by using disc diffusion for Kerby - Bauer method, bacteria had high susceptibility against ? - lactamases antibiotics where they had susceptibility against Ampicillin+ Clavulanic acid by 38.7% and 79% for Ampicillin. The least susceptibility was for Amoxicillin by 69.7%. Bacteria had no resistance for Imipenem where their susceptibility was 100%. Bacteria had weak susceptibility against Aztreonam by 13.9%. While with cephalosporins, susceptibility for Ceftazidime by 27.9% and for Cefotaxime by 20.9%. With Aminoglycosides, resistance to Gentamicin antibiotics was 34.8% and 30.2% for Amikacin. The results showed that resistance to Quinolones was 16.2 for Nalidixic acid while for fluoroquinolones resistance was 25.5% for Ciprofloxacin and 18.6% for Norfloxacin. Isolates ability to produce CTX - M, SHV, TEM and AMPC extended spectrum ? - lactamases enzymes was tested by investigating the existence of blaTem, blaAMC, blaCTX - M and blaSHV genes in these isolates through Polymerase chain reaction (PCR). There were 23/26 isolates (88.4%) showed their ability to contain blaAmpC gene, and 7/26 isolates (26.9%) contained blaSHV gene. There are 18/26 isolates(69.2%) contained blaTEM gene while 20/26 isolates (76.9%) contained blaCTX - M.Through using Quantitative Real Time - Polymerase chain Reaction (qRT - PCR), gene expression measurement for blaCTX - M, blaTEM and blaAmpC was measured by relative numbers. The results showed that gene expression measurement for ? - lactamases enzymes type AmpC produce by Escherichia coli was the highest if compared with ? - lactamases enzymes type TEM and CTX - M with different periods of incubation, which is T4h for 4 hours, T24h for 24 hours and T48h hours of incubation respectively. It is noticed that genes responsible for producing ? - lactamase enzymes type TEM, CTX - M and AmpC are changed during different periods of incubation through using Real Time - Polymerase chain Reaction (RT - PCR).

دراسة وراثية جزيئية لبكتريا المكورات المعوية البرازية Enterococcus faecalis المعزولة من جذور الاسنان الملتهبة للانسان في بغداد == Molecular Genetics Study of Enterococcus Faecalis Isolated From Root Canal Infection of Human In Bagdad

اسم المؤلف: سوزان علي كاظم
اسم المشرف: عذراء حميد حسون
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
الجامعة: جامعة بغداد
اللغة: العربية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: تم التحري عن نسبة وجود بكتريا المكورات المعوية البرازية Enterococcus faecalis في (100) عينة معزولة من اشخاص مصابين بالتهاب قناة جذر السن, اذ تم جمع (70) عينة من الاصابات الابتدائية لقناة الجذر، و(30) عينة من الاصابات الثانوية لقناة الجذر (اعادة العلاج) وم | To detection Enterococcus faecalis in (100) root canal sample were collected from primary and secondary root canal infection patient`s from all the ages (10 - 50) during the period of (August 2013) till (January 2014). Detection depending on cultural & microscobial characteristics of bacterial cell was done to find (45) 0f E. faecalis species & Biochemical tests & Serological diagnosis by Lancefield method done to find (24) isolates of this species & Diagnosis by Vitek2 was done to find (20) isolates of E. faecalis. When the Molecular genetics Diagnosis was done the result showed find (32) isolates belong to E. faecalis. The antibiotic sensitivity test was done by using (14) antibiotics, (5) isolates showed resistant against all antibiotics & the isolates showed multiresistant against for some antibiotics. All the isolates were resistant by (100 %) against (5) antibiotics. To detection of the isolates ability of production of protease enzyme, lipase enzyme, hemolysin enzyme & gelatinase enzyme.The results showed that (24 isolate) (75 %) were protease producer, & (8 isolates) (25 %) were lipase producer, & (16 isolate) (50 %) were hemolysin producer, & (5 isolates) (15.6 %) were gelatin producer. To detection the presence efa A gene of the isolates by used specific primer to this gene, and all isolates

دراسة لتشخيص بكتريا الملوية البوابية Helicobacter pylori المعزولة من الخزع النسيجية والغائط == Study For Diagnosis Helicopacter Pylori Isolated From Biopsy And Stool

اسم المؤلف: ابرار علي حسين
اسم المشرف: هيام عبد الرضا كريم العواد | ياسمين خضير الغانمي
الموضوع العام: علوم الحياة
السنة: 2015
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: كربلاء
الصفحات الاولى:
المستخلص: تناولت الدراسة الحالية عزل وتشخيص بكتريا (Helicobacter pylori) من الخزع النسيجية وعينات البرازالماخوذة من المرضى المراجعين مستشفى الحسين التعليمي حيث جمعت 122 عينة من الخزع النسيجية من وحدة الناظور من 61 مريض بواقع عينتين للمريض الواحد, كما تم جمع 228 عين | The present study addressed isolate and diagnose the bacteria (Helicobacter pylori) from biopsy and stool, samples taken from AL - Hussein Teaching Hospital where collected 122 samples of biopsy from the endoscopy. From 61 patients by two samples per patient, also were collected 228 samples of stool from the laboratory of the Department of parasites by two samples of 114 patients for the period from January 2014 to January 2015. Where shown on biopsy results which were subject to examination by the rapid urease test (RUT) the presence of 60 (98.4%) cases, while there were 23 (37.7%) case of those bacteria being positive related to biopsy was not significant differences between the two tests performed. When the distribution of test results (RUT) and culture according to age group, it appear that the highest percentage of infection was in 50 - 41 age group that which showed the highest percentage on examination (RUT) of the number of infected at 16 (26.23%) cases, either in the culture technique number of infected at 9 (14.75%) cases. But when the results of each of the examination (RUT) and culture were distribution according to the sex of the patient's infection was the higher in the females than males reaching males 28 (45.90%) cases in females of 32 (52.46%) cases for examination (RUT). No significant differences appear between the sexes in terms of infected. While the males in 8 (13.11%) and in the case of females was 15 (24.59%) case for the culture technique it did not show significant differences between the sexes in terms of the patients. While taking stool samples to check the stool antigens, it was found that there are 76 (66.7%) cases diagnosed while the technology for the polymerase chain reaction gene cagA to 49 (43%) cases have significant differences between the tests performed. When distribution the results of each of the stool antigens and polymerase chain reaction technique by age group category the highest infected was in 46 - 55 the age group with the number of 23 (20.18%) people case for screening stool antigens. The test results of the technology polymerase chain reaction showed that highest rate of infection was in the 35 - 26 age group where the number of patients was at 15 (13.16%) case.The results of the stool antigens examination also showed that the infection rate among males was higher than females, 39 males (34.21%) and in the case of females has reached the number of 37 cases (32.46%) casesThat did not show significant differences between the sexes patient. The technical results of the polymerase chain reaction by sex has been the injury was higher in females than males reaching 22 in males (19.30%) cases, while in females was 27 (23.68%) cases did not show significant differences between the sexes in terms of the infected. The results of the study conclude that (RUT) and stool antigen test is the fastest in the detection of infection from the bacteria H. pylori and then comes beyond culture technique for biopsy sample and then polymerase chain reaction for stool samples

العلاقة بين مرض السكري المناعي الذاتي الكامن النمط الثاني للبالغين مع الخمج بالملوية البوابية == Association Between Latent Autoimmune Diabetes Of Adults In Type Ii Dm With Helicobacter Pylori Infection

اسم المؤلف: سيف علي مكلف
اسم المشرف: عروبة خالد عباس | مدين علي حسين
الموضوع العام: الطب
السنة: 2015
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: Latent Autoimmune Diabetes in Adults (LADA) is a form of diabetes which is less recognized and underdiagnosed type of diabetes which appears to have characteristics of both type 1 (autoimmune in nature) and type 2 diabetes (adult age at onset).Helicobacter pylori (H. pylori) infection has a worldwide distribution. The bacteria colonize more than half of the world population and consider the main cause of gastritis, peptic ulceration, gastric adenocarcinoma and gastric lymphoma. The host immune response is unable to clear the infection and may actually contribute to the associated pathogenesis, also the bacterial virulent factors had certain role in the pathogenicity of infection as it was stated by limited studies that the Cytotoxin associated gene A (CagA) protein and Vacuolating cytotoxin gene A (VacA) protein positive strains are possibly associated with severe infections.The present study was designed to find out the percent of LADA patients among group of type II Iraqi diabetic patients and the relation between LADA patients and H. pylori infection.The study was carried out on 350 type II patients attending the National Diabetes Center/ Al - Mustansirrhea University/ Baghdad Al - Yarmouk during the period May to October 2014 were recruited for this study. Diagnostic markers for LADA, namely, C - peptide levels by Radioimmunoassay and GAD autoantibodies by ELISA test were determined and other Various parameters such as, HbA1c levels, Anti - H.pylori IgG, Anti - CagA protein and Anti - VacA protein by ELISA test were evaluated and correlated with type 2 diabetes and 40 control, matched by age and gender were also included.57 patients of 350 of type II have low C - peptide level, from which, 40 patients have Anti - GAD65 positive and 17 patients have Anti - GAD65 negative.The percentage of LADA patients among type II diabetes was 11.4%.The mean serum levels of C - peptide of LADA patients, controls and type II diabetes (0.30 vs. 1.94 and 3.15ng/ml) were significantly lower in LADA patients as compared to controls and type II patients (p?0.05).Also the mean blood concentrations of HbA1c of LADA patients, type II and controls (8.5 vs. 7.5 and 5.2 %) were significantly higher in LADA patients as compared to type II patients and controls (p?0.05).The Higher frequency of anti - H. pylori IgG was in LADA patients when compared with patient's controls and healthy controls (59.6%, 21.3% and 19.1%) and the p - value (?0.05).In conclusion, Cytotoxic associated gene A protein (Cag A) protein is more frequency with H. pylori positive patients 36/47 (76.6%) indicate an important role of this virulence factor in the pathogenesis of H. pylori, so they could be considered as a good biomarker for discern the risk of developing serious gastroduodenal disease in the host, than Vacuolating cytotoxin A Protein (Vac A) which is less frequency than Cag A in H. pylori positive patients 16/47 (34%).