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تشخيص وتوصيف جزيئي للفايروس الغدي البشري من المرضى المصابين بالتهاب قرنية وملتحمة العين الوبائي في محافظة بابل == Isolation and Molecular Characterization of Human Adenovirus from Epidemic Keratoconjunctivitis Patients in Babylon Governorate

Author name: نيـران كاظم فرهـود الربيعي
Supervisor name: ازهار عمران الذهب | غانم عبود المولـى
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

تقيم بعض معايير الاكسدة ومضادات الاكسدة وجين Mitochondrial Cytochrome C - 1 oxidase لدى الرجال المدخنين والمصابين بفرط الكريات الحمر الثانوي == Evaluation of Some Oxidant - Antioxidant Parameter and Mitochondrial Cytochrome C - 1 Oxidase Gene in Smokers' Secondary Polycythemic Men

Author name: ميادة عبود محمود فرحان
Supervisor name: داخل غاني عمران الوطيفي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: ان الدراسة الجارية تضمنت بحث بعض معايير الاكسدة ومضادات الاكسدة oxidant - antioxidant parameters)) وعزل mt - DNA لغرض تعيين الجين المشفر للانزيم cytochrome - oxidase - C لدى الرجال المدخنين المصابين بفرط الكريات الحمر polycythemia)). كان العدد الكلي لا شخاص الدراسة120 رجلا , كان منهم 60 رجلا مدخنا مصابا بفرط الكريات الحمر اما العدد الباقي 60) رجلا( فقد كانوا اصحاء وغير مدخنين وقد استخدموا كمجموعة سيطرة (control). تراوحت جميع اعمار اشخاص الدراسة بين30 سنه الى 60 سنه تم تقسيم جميع اشخاص الدراسة(اصحاء ومرضى) الى ثلاثة مجاميع عمرية وكالاتي؛ المجموع الاولى (30 - 39 سنه) ؛المجموعة الثانية (40 - 49سنه) المجموعة الثالثة(50 - 59سنه). تميز جميع المرضى في هده الدراسة بارتفاع معنوي (p<0.05 ) في قيم حجم الخلايا المضغوط pcv)) عند مقارنتهم مع الاشخاص الاصحاء وقد لوحظ حصول ارتباط ايجابي (r=0.8) بين قيم pcv ومعدل العمر. اما بخصوص بروكسيدات الدهون lipid peroxidation)) فقد سجل مركب malondialdehyde ( وهو دليل واضح لا كسدة الدهون) ارتفاع واضح (p<0.05 ) لدى كل مجاميع المرضى عند مطابقتهم مع الاشخاص الاصحاء . وقد سجلت قيمه ارتباطا ايجابيا مع كل من العمر (r=0.4) ومستوى ال .(r=0.4) PCV وبشان معايير مضادات الاكسدة(Anti - oxidants) فقد اشرت قيم الكلوتاثيون المختزل (GSH) وهو مضاد اكسده غير انزيمي ) انخفاضا معنويا p<0.05) ) لدى المجاميع الثلاثة للاشخاص المدخنين عندما قورنوا مع الاشخاص الاصحاء. كدلك سجلت قيمة ارتباطا عكسيا مع كل من العمر (r= - 0.2 )و قيم ال PCV (r= - 0.9).اعطت قيم فعالية الكاتليز (catalase activity) انخفاضا معنويا p<0.05) ) لدى جميع الفئات العمرية للاشخاص المدخنين بالمقارنة مع الاشخاص الاصحاء. كدلك سجلت قيم فعالياته ارتباطا عكسيا مع كل من العمر (r= - 0.2)و قيم ال PCV (r= - 0.9).وبشان قيم فعاليات انزيم superoxide dismutase فقد تبين كدلك حصول انخفاضا ملحوظ p<0.05) ) لكل الفئات العمرية للاشخاص المدخنين المصابين بفرط الكريات الحمراء عندما مقارنتهم مع الاشخاص الاصحاء. وتبين حصول ارتباط عكسي بين فعاليات SOD وكل من العمر (r= - 0.5)و PCV (r= - 0.5).نتائج الدراسة الحالية اثبتت بان التدخين وفرط كريات الدم الحمراء ليس لها تاثيرات على الجين المشفر ل cytochrome oxidase c1و الموجودة على DNA المايتوكوندريا باستخدام تقنية الPCR ومن النتائج الموضحة في اعلاه؛ فان الايضاح المدون لهده التغيرات يمكن اعزاءه الى العدد الهائل من الكريات الدم الحمراء ونواتج التدخين السامة والتي يمكن ان تسبب انخفاض جميع فعاليات مضادات الاكسدة وزيادة بيروكسيد الدهون وعلاوة على دلك؛ يلعب العمر دورا كبيرا في خفض فعاليات مضادات الاكسدة وزيادة بيروكسيد الدهون. | The current study was involved to investigate some oxidant - antioxidants parameters and isolation of mt - DNA for cytochrome c - 1 oxidase gene of smoker men affected with polycythemia . One hundered twenty (120) men were recruited in this study ,of them, sixty (60) smoker men affected with polycythemia and the remaining number (60) men were healthy men and serves as control group in this study . all ages of the enrolled subjects were limited between 30 - 60 years old .According to their ages, they were classified into three groups, first group(30 - 39 years old),second group(40 - 49 years old), and third group(50 - 59 years old). All patients included in this study have packed cell volume (PCV) higher than of their healthy counter parts and showed significant increase (p<0.05) when compared with healthy control men. Moreover, levels of PCV have a positive correlation (r=0.8) with advanced ages. concerning lipid peroxidation, malondialdehyde (MDA)as markers of lipid peroxidation was used, an its results revealed a significant increase (p<0.05) in all groups of smokers' polycythemic men and also showed a positive correlation with age (r=0.4) and PCV(r=0.4) Regarding markers of antioxidants, results of reduced glutathione (GSH) non - enzymatic antioxidants, were significantly decreased (p<0.05) in all tested groups in compared with those control group. it was found that results of GSH proportionate inversely with age (r= - 0.2) and PCV(r= - 0.9). About catalase activity , results of its activity indicated a marked decrease (p<0.05) in three age groups of smokers' polycythemic men in a comparison with control groups . the activity of catalase pointed out a negative correlation with both age and PCV(r= - 0.3 ,r = - 0.6 respectively) Serum superoxide dismutase (SOD)activity were also significantly decrease (p<0.05) in all age groups of smokers' polycythemic men when compared with those control group .The SOD activities were inversely proportionated with age and PCV(r= - 0.5, r= - 0.5, respectively). results of the present study confirmed that the smoking and polycythemia have not effects on cytochrome oxidase C1 gene of mt - DNA by using PCR technique. Finally, according to correct study that mentioned above the possible explanation to these findings can be showed that high PCV and toxic materials produced by smoking can be implicated with drop of antioxidant activities with increase lipid peroxidation. Moreover, aging can be exert negative action on these anti - oxidants that associated with increase lipid peroxidation marker (MDA

تقييم تحديد عينات دم الانسان المخلوطه باستخدام تقنيه PCR == Forensic Molecular Study of Fungemia Using ITS Region

Author name: علي حميد مجيد الاسدي
Supervisor name: محمد جواد الجصاني
General topic: Biology
Specific topic: Criminal Evidence
Degree: Higher Diploma
Language: English
University location: Babylon
First pages:
Abstract: يمكن ان يكون لطريقه تفاعل البلمره المتسلسل دور فعال في المحكمه لابراز الادله الثبوتيه او النافيه خاصه بعد تحديد السلالات الفطريه التي تعطي معلومات عن المنطقه الجغرافيه ومصدر الاصابه سواء كان من مصادر حيوانيه او عمليه ارهابيه تستهدف المجتمع باستخدام عوامل ميكروبيه.اهداف الدراسهاهمية الدراسة الحالية هي لتقييم التحقيق الجزيئي للاصابة الفطرية بستخدام تقنيه تفاعل البلمره المتسلسل باستخدام البوادئ ITS1 ,ITS4 والتي تساعد في التفريق بين دم الانسان المخلوط ودورها في دور محتمل لتورط الشخص في القضية الجنائية. تحديد مدى الاصابة الفطرية في الحيوانات التي قد يكون لها دور باعتبارها مصدر لتفشي وباء والذي يتطلب اتخاذ اجراءات سريعه للحد من انتشار المرض وطمانه المجتمع بان الوباء تحت السيطره.طريقه العملتم جمع 70 عينه دم في انابيب حاويه على ماده EDTA تتظمن 20 عينة من اشخاص اصحاء لا تظهر عليهم اعراض مرضيه و20 خروف و20 دجاجه و10 اشخاص يعانون من سرطان الدم. تم فحص العينات من ناحيه احتوائها على اصابه فطريه باستخدام الطرق المزرعيه والجزيئيه. بعض عينات الدم تم خلطها لتقييم مدى دور التحري عن الاصابه الفطريه في تحديد وجود الشخص المصاب ضمن مسرح الجريمه.النتائجلم تظهرت اي نتيجه ايجابيه عند زراعة عينات الدم المختلفة على اطباق المزرعة الغنية حتى بعد حضنها لمدة اسبوع . اظهرت نتائج تحليل تفاعل البلمره المتسلسل لمنطقه ITS باستخدام بادئات خاصه بالفطريات, ان الاصابه الفطريه الجهازيه لدى الاشخاص الذين يعانون من سرطان الدم بلغت 70% بسبب ضعف المناعه لديهم بالمقارنه مع الاشخاص الاصحاء الذين بلغت لديهم نسبه الاصابه 30% مما يدل على احتمال حدوث حاله تفشي لمرض فطري من خلال التعامل المباشر مع الحيوانات مثل الدواجن او الخراف الذين ظرت نسبه الصابه بهم 40% و20% على التوالي او من مصادر اخرى خاصه مع زياده نسبه الصابه في العينات البشريه بالمقارنه مع العينات الحيوانيه.تظهر نتائج الترحيل الكهربائي في الهلام لنواتج تفاعل البلمره المتسلسل خليط من العينات الدم الانسان التي نستطيع التفريق بين الاجابية والسلبية , تشير هذه النتائج الى احتمال تورط الشخص مع الدم الملوث في حالة الجريمة يمكن استخدامها كعلامة داعمة في تحقيقات الطب العدلي الاستنتاجان تقنية تفاعل البلمره المتسلسل تعطي نتائج قيمة في التفريق بين عينات دم بشريه مختلطه من خلال الكشف العدوى الفطرية حسب المنطقة تضخيم ITS التي قد تكون بمثابة فكرة اساسية داعمة في تحقيقات الطب الشرعي. اضف الى ذلك، انه يعطي مؤشرا على وجود عدوى حيوانية المصدر و/ او عمل ارهابي محتمل.

دراسة جزيئية ومناعية كيميائية لانسجة عنق الرحم المصابه بفايروس الورم الحليمي البشري == Molecular and Immunohistochemical Study of Uterine Cervical Tissues Infected with Human Papilloma Virus

Author name: الهام جواد كاظم بلال
Supervisor name: ازهار عمران لطيف الذهب
General topic: Biology
Specific topic: Microbiology - Viruses
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: Human papillomavirus (HPV) is a DNA virus. It is the main etiological factor for progress of cervical precancerous and cancerous lesions. In order to develop a cancer from dysplasia to invasive carcinoma, a series of cellular changes should occur. As genital HPV carries oncogenes involving in these critical changes, currently HPV has been considered the most important risk factor of cervical cancer.This study was designed as case control study. In the retrospective part of these study a total number of (56) formalin - fixed, paraffin embedded cervical tissues was involved were submitted to ISH and IHC technique 27 with Cervical Carcinoma (CC) and 16 with benign cervical tumors. Thirteen (13) apparently healthy cervical tissues were used as a control group .The age of this individuals (patients and control groups) was ranged between 23 and 73 years. Samples collected from the pathological archives of different general hospital as well as many private laboratories. Specimens belong to the period from January 2009 to September 2015. After sectioning of these cervical biopsies and staining by hematoxyline and eosin, a final definitive histopathological diagnosis was done by a consultant histopathologist.In the cross - section part of this study seventy two female patients taken from different general hospitals. Cytological examinations were performed for their Pap - smeared and a final definitive cytopathological diagnosis was done by a consultant histopathologist. According to their main cytological finding cervical cellular scrapes were divided into three cytological groups : cervicitis with squamous intraepithelial lesions, cervicitis without squamous intraepithelial lesions and healthy group. The DNA isolated from a representative cytological specimen was investigated by real - tim PCR analysis for the detection and genotyping of high/risk HPV DNA.The obtained results are summarized as follows : - The age range distribution mostly in age group (23 - 73 years), the most affected age group in malignant and benign cervical tumor was (52 - 67) , (36 - 51) years which constituted 55.6%(15 out of 27 cases), 50% (8 out of 16 cases) with mean age (54 ± 11.22), (38.8 ± 9.85) respectively, while (20 - 35 years) is the most affected age group in control cases were constituting 53.8% (7 out of 13 cases) with mean age (35.5 ± 8.64 ) . - The most common histopathological type among all studied archived cervical tissues was squamous cell carcinoma (66.6%), followed by the adenocarcinoma (33.3%). - The well differentiated grade of CC constituted 52%, whereas those with moderately and poorly differentiated grades CC constituted 37%and 11% respectively. - The percentage of HrHPV31/33 DNA was detected as follows : in 55.6 % of tissues from cervical cancers, 43.7% in the tissues from benign cervical tumors, while, no HrHPV31/33 positive - ISH reaction was detected in healthy cervical tissues of the control group. - The percentage of LrHPV6/11 DNA was detected as follows : in 33.3 % of tissues from cervical cancers, 31.3% in the tissues from benign cervical tumors, while, the percentage of LrHPV6/11 show negative - ISH reaction in healthy control group of cervical tissues. - The highest positive result for ISH of HPV31/33 found in squamous cell carcinoma 72.2% and in adenocarcinoma was 22.2% while the percentage of HPV6/11detection according to cancer type was 50% found in squamous cell carcinoma while 0.0% in the type of adinocarcinoma. - The highest percentage of HPV31/33 detected in relation with tumor grade depending on the differentiated of cells was 70% (7 out of 10 cases) show in moderately differentiated, followed by 57.1% (8 out of 14 cases ) in well differentiated , and none of poorly differentiated showpositive signal . - The highest percentage of HPV6/11 detected in relation with tumor grade depending on the differentiated of cells was 42,9 % (6 out of 14 cases) show in well differentiated, followed by 30% (3 out of 10 cases ) in moderately differentiated , and none of poorly differentiated show positive signal . - The highest percentage of co - infection with High risk HPV31/33 and Low risk of HPV6/11 types was (22.2%) in malignant cervical tumor group. While in benign cervical tumor and healthy control was 18.8% and 0.0% respectively. - The highest percentage of HPV DNA detection by Rt - PCR was 80% (16 out of 20 cases) within group of cervicitis with SIL, 16.7% (5 out of 30 cases) in group of cervicitis without SIL, while none of control group shoes positive result. - Phylogenetic tree analysis image, results that local HPV amplicon(S1, 3, 5, 7, 9, 12, 14, 15, 16, 17, 18, 20) show closed related to NCBI - Blast HPV type 16 (KMO58666.1), the local HPV isolates (S2, 4, 6, 11 and 19) show closed related to NCBI - Blast HPV type 18 (KC470225.1), whereas the local HPV isolates (S10 and 13) show closed related to NCBI - blast HPV type 33 (EU918766.1), the local HPV isolates (S8) show closed related to NCBI - Blast HPV type 45 (KC470260.1). - Retinoblastoma protein overexpression was detected by IHC test in 59.3% of malignant cervical tumors, 43.8% of benign cervical tumors but no signal was reported in the tissues of control group. In the malignant cervical tumors group, 43.6% has strong score (score III), whereas 37.5% and 18.8% has moderate score (score II) and low score (score I) respectively. While, in benign cervical tumor group, 57.1% were found tohave moderate score (score II) , 28.6% and 14.3% have strong score (score III) and low score (score I) respectively. - P16 protein overexpression was detected by IHC test in 63% of malignant cervical tumors, 56.3% of benign cervical tumors while none of positive result was reported in the tissues of control group. - The highest positive result for IHC of Rb and P16 according to cancer type was found in squamous cell carcinoma 61.1% and 72.2%, respectively, while there percentage in adenocarcinoma was 55.6% and 44.5%, respectively. - The highest percentage of Rb protein expression was found within poorly differentiated that have 100% (3 out of 3 cases) .Followed by 70% (7 out of 10 cases) and 42.9 % (6 out of 14 cases) within moderately and well differentiated respectively. - The highest percentage was 100 % (3 out of 3 cases), 64.3%(9 out of 14 cases), 50% (5 out of 10 cases) of cervical cancer tissues that showed IHC reaction for P16 protein have poorly, well and moderately differentiated respectively. - Among 22 cervical cancer tissues that showed infection with high oncogenic risk - HPV31/33 genotypes 100% and 77.3% have additional impact by P16 and Rb protein expression respectively. - Immunohistochemical examination of cervical tumor tissues for CD8+,CD16+ and CD20+ cell surface markers, revealed that CD8+cells the percentage of detection was 66.7% in cervical cancer group, 62.5% in benign cervical tumor group and 23.1% in control group. Also, CD16+ was detected in 29.6% of cervical cancer group, 31.3% of benign cervical tumor group and in 15.4% of control group. The CD20+ cells were detected in 44.4 % of cancer group, 43.8% of benign tumor group, and in 15.4 % of control group. - Among 22 cervical cancer tissues that showed infection with high oncogenic risk - HPV31/33 genotypes 77.3% have additional impact by CD8+ protein expression. Whereas 45.5%, 54.5% have additional impact of CD16+, CD20+ protein expression respectively

ارتباط التغايرات الوراثية لجينات نظام الدوبامين مع السلوك الاجرامي العنيف للسجناء العراقيين == Association of Dopaminergic System Genes Polymorphisms with Violent Criminal Behavior in Iraqi Prisoners

Author name: سهاد رضا متعب الطائي
Supervisor name: محمد عبد الله جبر جاسم
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The violent criminal behavior is emerged from the interaction between several genetics and environmental factors. The present study reflect the role of polymorphisms in dopaminergic system genes (drd2 ,comt ,dat1 ,drd4, and maoa) on violent criminal behavior in Iraqi prisoners.This research was a case - control study , blood samples were collected from 200 prisoners (case group) who convicted with terrorism (150 sample), murder (30 sample) and drug trading (20 sample) Issues selected from Al - Hilla reformist central prison for men and women in Babylon city and from position and deporting division in Karbala .This sample included (160 male and 40 female). Additionally, 100 sample were collected as control group included (54 male and 46 female).DNA was extracted and the polymorphisms analysis achieved by Restriction Fragment Length Polymorphism (RFLP - PCR) for drd2 and comt genes ,while the dat1 ,drd4 and maoa polymorphisms was analyzed by Polymerase Chain Reaction (PCR).All polymorphisms (except drd4) were subjected to PCR - sequencing for confirming the presence of polymorphisms .The results showed that the percentage of the case group was 34.5 % with an age ranged between 20 - 39 years ,most of them were male 80% ,72.5% were married ,77.5% were from rural area ,84% were self - employed and 41.5% were illiterate .Genetic analysis of drd2 TaqIA polymorphism demonstrated that a significant increase in the genotype frequency of A1/A1 was observed in case group (p = 0.03; OR= 4.93 ; 95% CI=1.08 - 22.5) and the A1 allele frequency was significantly associated with criminal behavior (p=0.03 ;OR=1.51; 95% CI=1.04 - 2.21).The comt (Val 158 Met) polymorphism revealed that the homo - mutant genotype A/A had significant higher risk of criminal behavior (p= 0.001 ;OR= 3.98 ; 95% CI= 1.7 - 9.3) when compared with control group. and the A allele(met allele) frequency was significantly associated with case group (p=0.003; OR= 1.68; 95%CI= 1.19 - 2.37).On the other hand , the analysis of VNTR polymorphism in dat1 gene showed non - significant difference in 9/9 genotype and 9R allele frequency between the study groups (p>0.05).The VNTR polymorphism analysis for drd4 gene revealed that the criminal individual who carried 7/4 genotype was significant higher than in control group (p=0.03;OR= 2.6, 95%CI= 1.09 - 6.17), and the 7R allele frequency was significantly associated with case group (p=0.04;OR=2.06; 95%CI= 1.04 - 4.1).Finally, the maoa VNTR polymorphism was analyzed in male and female separately due to the gene location on X - chromosome .The results demonstrated that there was non - significant difference observed between all genotypes and alleles frequencies between case and control male (p> 0.05),whereas in female a significant association in 3.5/3.5 and 5.5/4.5 genotypes (p<0.01) ,additionally the 3.5 R alleles was associated with higher risk of violent criminal behavior in female (p= 0.004;OR=2.62; 95%CI=1.36 - 5.05).These results suggested that the drd2 ,comt ,drd4 and maoa in female polymorphism might increase the susceptibility of individual to engage in to crimes in the presence of certain environment risk factors.

الطريقة المثلى لاستخلاص الدنا من عينات الدم البشري == Optimization Method of DNA Extraction From Human Blood Samples

Author name: انتصار هادي طالب اليساري
Supervisor name: ذكرى عبد العالي الكعبي
General topic: Biology
Specific topic: Criminal Evidence
Degree: Higher Diploma
Language: English
University location: Babylon
Key words:
  • History of Forensic DNA
  • Sources of DNA (Evidence)
  • Bone and Teeth
  • Extraction of DNA
  • Other Method for Investigation Human DNA Profile
  • Instruments and Equipment
  • Solutions and Agarose Gel Preparation
  • Detection of β - Globin Gene by PCR Assay
  • I
First pages:
Abstract: his study was conducted to create an environment that mimic those samples collected from crime scenes Blood samples were collected from one hundred and twenty persons from Hila city. These samples were used to stimulate the different possible blood samples obtained for forensic medical purpose. The following simulations were created : 20 fresh blood samples, 20 frozen blood samples, 40 dried blood stain samples on carpet (20 samples collected after 2 hours & 20 samples collected after 3 hours), and 40 samples in the form of dried blood stains on soil(20 samples collected after 2 hours & 20 samples collected after 3 hours).Extraction of genomic DNA was attempted from the listed forms of blood samples by using four different methods : Promega purification kits, Favorgen purification kits, salting out methods, and two - step lysis assay.These methods were compared for the best extraction of DNA and were confirmed by molecular detection of β - globin gene using polymerase chain reaction (PCR) technique.After extraction of gDNA and electrophoresis by use agarose gel electrophoresis and measuring the concentration and purity of DNA by bio drop spectrophotometer. Purity was then confirmed by PCR. The results indicated that the best methods for genomic DNA isolation were from fresh, frozen ,and dried stains on carpet using Promega purification kits, whereas, from dried blood stain on soil ,none of the four methods was suitable for isolation the genomic DNA.

دراسة جزيئية ومناعية للمستقبلات TLRs المرتبطـــة بداء المــقوسات في محافظة القادسية == Molecular and immunological study of TLRs associated with Toxoplasmosis in Al - Qadisiyah province

Author name: هديل شاكرهادي التميمي
Supervisor name: رائد عباس كاظم | رحيم طعمة عبيس
General topic: Biology
Specific topic: Life Science
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: المقوسة الكوندية طفيليات داخل خلوية تصيب نسبة كبيرة من سكان العالم. وقد اظهرت العديد من الدراسات ان المستقبلات ((TLR تلعب دور مهم في الامراض الطفيلية المختلفة. وقد اجريت هذه الدراسة لتحديد الجينات TLR7 وTLR9 والسيتوكينات ذات الصلة في 125 امراة مجهضة كمجموعة بالمقارنة مع 15عينة من النساء الاصحاء (غير حوامل) و15عينة من النساء الحوامل كمجموعات سيطرة في مستشفى النسائية والاطفال في محافظة القادسية من كانون الثاني / 2015 وحتى اذار / 2016، وقد تم سحب 5 مل من عينات الدم الوريدي من النساء تحت ظروف معقمة. هناك ثلاثة جوانب في هذه الدراسة , وتضمن الجانب الاول قياس مستويات الاجسام المضادة (العدوى الكامنة والعدوى المكتسبة مؤخرا) في مصل النساء المجهضات والحوامل وغير الحوامل . الجانب الثاني تضمن تحديد مستويات السيتوكينات (IL - 12، IFN - γ) وproflin - 1 (PFN - 1) في مصل النساء المجهضات والحوامل وغير الحوامل. تم الكشف عن مستويات السيتوكينات (IL - 12، IFN - γ) وPFN - 1 في الدم باستخدام تقنية ELISA . ركز الجانب الثالث على تحديد الجينات TLR7) , (TLR9 واستخلاص الحمض النووي DNA من النساء عن طريق تفاعل البلمرة المتسلسل (PCR). واظهرت النتائج ان معدل الانتشار المصلي IgM (العدوى الكامنة) وIgG (العدوى المكتسبة مؤخرا) الاجسام المضادة للتوكسوبلازما كانت موجبة في 55/125 حالة بنسبة ((44% و5/125 حالة بنسبة (4%) على التوالي، والانتشار المصلي للاجسام المضادة لل T.gondii في النساء المجهضات .48% ولم تسجل مصليا بشكل مختلط في هذه الدراسة، في حين كانوا النساء الاصحاء بنسبة(0%) لجميع الاجسام المضادة . وجدت علاقة ذات اهمية احصائية (P<0.05) بين الانتشار المصلي للاصابة بداء المقوسات المزمنة والعمر للنساء المجهضات ، الامراض المزمنة ، ووقت الاجهاض ، وقد اظهرت النتائج عدم وجود علاقة ذات اهمية احصائية بين الاصابة بداء المقوسات وقدرة النساء على انجاب الاطفال وتكرار الاجهاض. اكدت النتائج ان النساء المجهضات الموجبات للاجسام المضادة IgG يزداد لديهم تركيز IL - 12 زيادة معنوية بالمقارنة مع مجاميع السيطرة ، في حين انه لاتوجد اي زيادة معنوية في تركيز الاجسام المضادة IgM بالمقارنة مع مجاميع السيطرة في قيمة LSD ((30.28. تركيز IFN - γ كان منخفض في النساء المجهضات الموجبات للاجسام المضادة IgM ، كلا المجموعتين من النساء المجهضات لديهم انخفاض في تركيز IFN - γ بالمقارنة مع مجموعة السيطرة (الحوامل وغير الحوامل) . كما ان النساء المجهضات السالبات للاجسام المضادة IgM لديهم انخفاض هام في بالمقارنة مع مجاميع السيطرة الاصحاء والحوامل في قيمة LSD (19.33).profilin - 1 البشري كان في مستوى منخفض في النساء المجهضات المصابات للاجسام المضادة IgM وIgG بالمقارنة مع مجاميع السيطرة الاصحاء والحوامل في قيمة LSD 230.14)). ان الصورة الجينية لجينات TLRs قد اوضح ان TLR7 وTLR9 كانا بنسبة 89.7%)), 84.1%)) على التوالي .كذلك النتائج وضحت وجود بعض التباين الوراثي (TLR7 وTLR9 الجينات) في النساء المجهضات مقارنة مع السيطرة، وهذا يعني وجود طفرات في الجينات للمرضى. | Toxoplasma gondii is an intracellular parasite infected large proportion of the world population. Many of studies have shown the critical part of TLRs in different parasitic diseases. The present study were performed to detect TLRs 7 and TLRs 9 genes and related cytokines in 125 aborted women as case group and 30 healthy women (15 non pregnant and 15 pregnant women) as control groups in the Maternity and children Hospital in the Al - Qadisiyah province from December 2015 till March 2016, Five milliliter of venous blood sample were obtained from each woman under sterile condition. Three aspects were involved in this study; the first aspect included the measurement of sera antibodies (IgG& IgM) in the aborted women and control and study epidemiological aspects for T. gondii infection. The second aspect determined the levels of cytokines (IL - 12 Pg./ml , IFN - γ Pg./ml) and human proflin - 1 (PFN - 1 Pg./ml) in the sera of aborted women and control. The levels of cytokines (IL - 12 , IFN - γ) and PFN - 1 in blood were detected by using ELISA principle. The third aspect focused on detection of TLR7 gene and TLR9 gene in extraction DNA of aborted women and control (non pregnant and pregnant women) by Polymerase Chain Reaction (PCR). The outcomes demonstrated the seroprevalence of IgG (latent infection) and IgM (recently acquired infection) anti - Toxoplasma antibodies were positive in 55/125 cases (44%) and 5/125 cases (4%) respectively, however the Overall Seroprevalence of anti - T.gondii antibodies in aborted women was 48%. Mixed seropositive for IgG and IgM were not recorded in the present study, whereas the control were 0% for all antibodies. Significant relationship (P< 0.05) was found between the seroprevalence of T.gondii as ( chronic infection , age groups of the aborted women, several chronic diseases and abortion time). The results showed no statistically significant association between Toxoplasma infection and the ability of women to have children and frequency of abortions. The results confirmed that the aborted women with positive IgG antibody have significant increase in IL - 12 concentration in comparison with control , while no significant increase in IgM in comparison with control groups at LSD value ( 30.28). The concentrations of IFN - γ were lower in positive IgM aborted women than IgG , both groups of aborted women have significant decreased in comparison with pregnant control. While IgM patients have significant decreased in comparison with pregnant and healthy control group at LSD value (19.33). The human profilin - 1 levels were lowered in infected aborted women with IgG and IgM antibodies in comparison with pregnant and healthy control at LSD value ( 230.14). The genetic profils of genes TLRs have explained that TLR7 and TLR9 were (89.1 %) , (84.7 %), Respectively in aborted women. The results illustrated the presence of some genetic variation (TLR7 and TLR9 gene) in aborted women compared with the control, and this means having mutations in the patients gene.

توصيف المركبات الفعالة في نبات الشويل Cressa cretica L. وتاثيرها في الفطريات المعزولة من التهاب الاذن الخارجية == Characterization of bioactive compounds in Cressa cretica L. and their effect on fungal otomycosis

Author name: اسيل محمد عمران الطائي
Supervisor name: نداء عدنان ابو سراج | ابتهال معز الحسيني
General topic: Biology
Specific topic: Plant
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: This study aimed to investigate the phytochemical components and antifungal activity of Cressa cretica L. using Gas chromatography - Mass spectrum (GC - MS) and Fourier transform infrared spectrophotometer (FTIR) techniques in addition to the characterization ( morphological and molecular) of fungal ear infection (otomycosis) and evaluate the antifungal activity (in vitro) of the C. cretica bioactive extracts. The secondary metabolites analysis of C.cretica extracts revealed the presence of phenols, alkaloids, terpenes, flavonoids, glycosides and tannins. The results of GC - MS reported 112 chemical compounds (30 in flowers, 34 in leaves, 23 in stems and 25 in roots). The results of the FTIR confirmed the presence of large numbers of functional groups in each part of the plant and these functional groups which varied according to the solvent type. More of these functional groups were alcohols, phenols, alkanes, alkyl halides, aldehydes, carboxylic acids, aromatics, nitro compounds and amines. The results were designed according to factorial experiments with complete randominal designed. Clinical diagnosis of otomycosis fungi revealed that there are 126 positive casesout of 185 cases included the filamentous fungi Aspergillus niger, A. flavus, A. terreuss, Penicilleum digitatium, either yeasts have included Candida parapsilosis, C. albicans, C. glabrata , C. Krusie. The percentage of Candida was 53.63% while the percentage of filamentous fungi was 46.36%, males was more infected than females, the age group 11 - 20 years old appear more affected than other age groups (19.8%), while the age group 31 - 40 years old and those who are older than 61 years were the least affected. Antifungal activity of C. cretica extracts revealed that each species of Candida had been affected by a part more than others, as well as a certain type of solvents, as follow : C. Parapsilosis largely affected by flowers extract when solvent hexane was used (the diameter of inhibition zone was 10.33 mm) at the concentration of 50%, while the C. albicans was most affected by whole plant when used ethyl acetate solvent (the diameter of inhibition zone was 10.92 mm). Stems extract by using hexane solvent was the most inhibitory growth effect on C. glabrata (the diameter of inhibition zone was 10.8 mm), while the roots extract by using methanol solvent showed largest inhibition on C. krusie growth (the diameter of inhibition zone was 8.56 mm). Minimum inhibitory concentration (MIC) reached to 25% on C. glabrata and C. krusie when using hexane stems extract and methanol roots extract respectively, while C. parapsilosis and C. albicans had reached the minimum inhibitory concentration to 30% when using hexane flowers extract and ethyl acetate whole plant extract.The results revealed that the alkaloids extract are the most effect against all species of Candida under study, the inhibition zone for C. parapsilosis was 4 mm diameters and 3.6 mm for C. albicans , 3.2 mm for C.glabrata and 5.2mm for C. krusie, followed by phenols extracts and terpens with the exception of C. albicans since terpenes extract had been more affected than phenols extracted, and this effect was increased with increasing the concentration of extract. When the C. cretica compared with the antifungal (Fluconazole) the results showed that the effect of extracts had greater inhibitory effect against otomycosis fungi, where the greatest impact of fluconazole was 8.23 mm at concentration 50% in the treatment of C. glabrata, and had the little inhibitory effect on the growth of C. krusie where the diameter of inhibition zone was 0.53 mm at the concentration 50%, and that the inhibitory effect increases with increasing concentration, while roots alkaloids gave inhibitory effect reached to 5.2 mm on C. krusie .

تجميع وتشخيص واستخدام الهائمات الحيوانية الدقيقة من نهر الحلة في تغذية يرقات اسماك الكارب الشائع (L., 1758) Cyprinus carpio

Author name: ازهار عبد الحميد عبد الحسن
Supervisor name: مؤيد جاسم ياس العماري | عدي جاسم عبد الرزاق
General topic: Biology
Specific topic: Environment
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: The present study was carried out in AL - Hilla River near Al mahaweel district in the middle of Iraq during autumn 2016 to summer 2017. The study included a collection of high density from microzooplankton by use special device then identified and used it as live food for early feeding common carp larva (Cyprinus carpio). The environmental factors of Hilla river tested for four seasons and ranged between 6 - 44 ˚C of air temperature, 9.5 - 30 ˚C of water temperature, 7.03 - 8.58 of pH, 921 - 1090 µm/cm of conductivity, 654.33 - 772.00 mg/l of total dissolved solids and 550.00 - 636.33 of salinity, 5.43 - 13.03 mg/l of total suspended solids, 7.5 - 10.31 mg/L of dissolved oxygen, 1.96 - 6.30 mg/l of BOD5, 1.61 - 2.49 m/s of water velocity, 5.17 - 16.80 µg/L of chloropyll - a - . The taxonomic and ecological study is done to the microzooplankton specially rotifer. There are few studies of rotifer in Hilla river, The result showed that the density of rotifera was ranged between 23ind. /L in the summer season to 65.66 ind. /L in winter season, included 65 rotifer taxa (62 species +2genera +1 class) were recorded in this study, 10 taxa (9 species + 1 genus) were recorded for the first time in Iraq and 14 taxa (13 species + 1 genus) were recorded for first time in Hilla River compared with available local studies. Keratella tropica showed the highest density of the rotifera, Lecane genus showed the highest species number (10 species). Canonical correspondence analysis showed Physico - chemical parameters of water affected on the density of rotifer both positively and negatively. There was positive significant correlation between density rotifer with electrical conductivity, total dissolved solids, and salinity, while pH showed the lowest effect on the density of rotifer than other environmental factors. Different species of rotifer showed some variations of the correlation with environmental factor, such as the density of Bdelloidea class correlated positive significant correlation with water temperature, while Keratella cochlearis species negative significant correlation with water temperature. Special system (multi - filtration system) designed and made by researchers in our study for collection high density of microzooplankton with size sample range between 50 - less 200 µm, with short time, less effort and low cost. The multi - filtration system that consists of three stages : pumping stage, multi - filtration stage and sample collection stage. The density of the samples was measured seasonally by comparing the density of the microzooplankton in Hilla river and the density of the microzooplankton sample obtained by the multi - filtration system. The highest density of multi - filtration system rotifer was 1023033 ind./L and the highest density of multi - filtration system total microzooplankton was 1052000 ind/L and measured chlorophyll - a - of sample multi - filtration system that ranged between 23.54 - 1931.09 µg/L. The density of rotifer and total microzooplankton that collect by the multi - filtration system were concentration up to 20222.22, 17558.81 times than what is in the river. After collection of the high density of microzooplankton by using the multi - filtration system, this microzooplankton was used as live food for early feeding fish larvae. A special experiment was designed to feed common carp of fish larvae (Cyprinus carpio) using three types of food : first live diet collected by the multi - filtration system that microplankton most rotifer, second soybean meal and third mixed food (rotifer and soybean meal). Some growth indicators for fish larvae were studied; the results showed that the highest growth rate and best survival rate were larvae fed on live food, highest increased weight and increased length, relative growth rate, specific growth rate and lowest survival rate (33.53 mg, 3.33mm, 87.78, 30.11, and32.38 % respectively) for larvae fish feeding on rotifera, while lowest increased weight and increased length, relative growth rate, specific growth rate and lowest survival rate (27.00mg, 1.43mm, 85.23, 27.39, and 61.90 % respectively) for fish larvae feeding on soybean meal.

دراسة جزيئية للجينات البيتا - لاكتاميز في بكتريا Acinetobacter baumannii المقاومة للمضادات الكاربابينيم == Molecular Study of ? - lactamase Genes in Carbapenem Resistant Acienetobacter baumannii (CRAB)

Author name: ربيع عبد الاله مجيد عبد علي الهنداوي
Supervisor name: ايمان محمد جار الله
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: During the period between April 2016 and January 2017, a total of 1100 clinical specimens (burns, wounds, throat, urine, blood) were collected from two hospitals in Babylon province Al - Hillah Teaching Hospital and Medical City of Mirjan Hospital. All specimens were cultured and 17 Acinetobacter baumannii isolates were obtained from clinical specimens in a percentage of (1.5%) distributed in burn 11 (2.8%), wound 1 (0.6%), throat 1 (2%), urine 3 (0.7%) and blood 1 (0.9%).This study was conducted to determine the presence of carbapenem resistance Acinetobacter baumannii (CRAB) isolates and the prevalence of β - lactamase genes responsible for carbapenem - resistance among clinical isolates of A. baumannii collected from two hospitals in Hillah City. Isolates were identified according to VITEK2 system. Antibiotics susceptibility was assayed by using disks diffusion method according to CLSI recommendations and it’s found 8 isolates was carbapenem resistant.The eight CRAB isolates were tested for biofilm formation by using the tube adherence test and the results showed that 5 of 8 tested isolates (62.5%) were strong for biofilm formation. Two genes related to biofilm formation was investigated (bap & blaPER - 1 genes). Six isolates were positive for the bap gene (75 %) and no isolates had positive for blaPER - 1 gene. The eight CRAB isolates were tested also for the presence of two virulence factor genes include espA (K1 capsular polysaccharide) and ompA (outer membrane protein A), this detection was performed by the conventional PCR technique. The positive result for espA and ompA genes was (62.5%) and (75%) respectively.IIPhenotypic detection of carbapenemase production was performed using the imipenem - EDTA disk and modified Hodge's test (MHT). Then isolates were subjected to monoplex PCR targeting blaCTX, blaTEM, BlaSHV, blaIMP, blaVIM, blaSPM, NDM - 1, NDM - 2, AmpC, OXA - 23, OXA - 24, OXA - 48, OXA - 51, OXA - 58 and OXA - 235 genes, all CRAB isolate gave positive result with MHT and (50%) of these isolates were positive to the imipenem - EDTA disk. PCR experiments showed ; all CRAB isolates were harbored blaOXA - 51 gene, six (75%) isolates were harbored blaCTX gene, four (100%) isolates were harbored blaTEM gene, four (50%) isolates were harbored blaVIM gene, four (50%) isolates were harbored blaSPM gene, seven (87.5%) isolates were harbored NDM - 2 gene, seven (87.5%) isolates were harbored ampC gene, six (75%) isolates were harbored OXA - 23 gene, one (12.5%) isolates were harbored OXA - 24 gene, two (25%) isolates were harbored OXA - 48 gene and one (12.5%) isolates were harbored OXA - 235 gene, while none of these isolates harbored BlaSHV, blaIMP, NDM - 1, NDM - 2 genes. All isolates of A. baumannii appear as MDR, while two isolates appear to be as XDR.These results revealed that CRAB isolates constitute 47% of all A. baumannii that had been isolated from Al - Hillah Teaching Hospital and Medical City of Mirjan Hospital in Babylon province and some of carbapenemase were detected in both phenotypic and genotypic methods (PCR). This underlies the importance of their accurate identifications and reporting to prevent the emergence of complete resistance to the most potent drugs against A. baumannii in Babylon province.

انتاج وتوصيف لنقي المنتجات الايضية لعزلة Streptomyces ودراسة تاثيراتها المضاد حيوية والسرطانية == Production and Characterization of Purified Metabolites from Streptomyces Isolate and Study

Author name: ليندا حميد تركي عطية الغزالي
Supervisor name: رباب عمران راضي الجيلاوي
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: شملت الدراسة الحالية جمع 100 عينة من الترب بواقع 50 عينة من ترب صحراوية جمعت من المناطق التي تبعد مسافة 3 كيلومترات من بحيرة الرزازة و50 عينة من ترب زراعية جمعت من مناطق مختلفة من محافظه كربلاء المقدسة. حيث عزلت 26 عزلة من البكتريا الخيطية من الترب الصحراوية و36 عزلة من البكتريا الخيطية من الترب الزراعية ودرست الفعالية التضادية لهذه العزلات ضد اربعة انواع من البكتريا المرضية ( بكتريا الموجبة لصبغة كرام Staphylococcus aureus and Streptococcus agalactiae وبكتريا السالبة لصبغة كرام (Escherichia coli and Pseudomonas aeru¬ginosa وبطريقة التخطيط العمودي, واظهرت النتائج ان جميع actinomycetes المعزولة من الترب الزراعية ليست لها اي فعالية مضادة للبكتريا المرضية بينما كانت لبكتريا actinomycetes المعزولة من الترب الصحراوية فعالية مضادة للبكترياالمرضية وبمديات مختلفة تبعا لنوع البكتريا المرضية المدروسة, وقد وجد ان لثمانية من عزلات actinomycetes الصحراوية فعالية مضادة للبكتريا المرضية السالبة والموجبة لصبغة كرام وتبعا لذلك المدى الواسع في التثبيط اختبرت فعاليتها المضادة بطريقة الانتشار بالحفر, واظهرت النتائج ان العزله LHR 9 actinomycetesلها فعالية مضادة للبكتريا المرضية اعلى من العزلات الاخرى المختبرة وباستخدام طريقة الانتشار بالحفر, لذلك اختيرت لاكمال محاور الدراسة المتقدمة. درست الصفات المظهرية والبايوكيمياوية والزرعية للبكتريا actinomycetes LHR 9 بعد زرعها على اوساط زرعية مختلفة من وسط استخلاص Streptomyces الدولي واعتمادا على الفحص المجهري باستخدام المجهر الضوئي المركب وتحت قوى تكبير 1000و400مره لدراسة شكل المايسليوم الهوائي والارضي, وقد تبين ان للعزلة مايسليوم هوائي متفرع له مظهر مفصص وغير مجزا وباستخدام المجهر الاليكتروني الماسح تبين ان المايسليوم يحمل ابواغا ملساء وغير متحركة, وبالاعتماد على مجمل الصفات الزرعية والفسيولوجية المدروسة تبين ان البكترياLHR 9 actinomycetes المعزولة تعود لجنس Streptomyces. درست عدد من الظروف الزرعية والغذائية المثلى لتحسين انتاج مواد الايض الثانوي من البكتريا في وسط التخمر وقد كان وسط فول الصويا الحاوي على الدكستروز كمصدر كاربوني والبيبتون كمصدر نتروجيني وK2HPO4 كمصدر فوسفاتي وبظروف تخمر : بدرجه حراره 35م0 , وحموضه 7 , وقوه اهتزاز 200دوره \ دقيقه ولمده 7 ايام كفتره حضن هو وسط الانتاج الامثل . استخدمت مذيبات عضوية مختلفة القطبيةn) - بروبانول وكلوروفورم وخلات الاثيل ووالاسيتون والميثانول والايثانول (في استخلاص مواد الايض الثانوي المنتجة من بكتريا Streptomyces sp. LHR 9 المضادة للبكترياالمرضية وقد كان المذيب العضوي خلات الاثيل افضل المذيبات العضوية في الاستخلاص اذ اعطى مستخلصه البكتيري اعلى قيم في التثبيط البكتيري . نقيت مواد الايض الثانوي بعد استخلاصها بخلات الاثيل بعمود الفصل : جيل السيليكا ذو الابعاد (1.6× 14) سم وباستخدام الميثانول والكلوروفورم بنسبه 8 : 2 حجم\حجم كمحلول الغسل لسم3 واحد من المستخلص البكتيري , وقد جمع 50 جزء من المحلول الناتج بعد الغسل واختبرت فعاليتهاالتثبيطية لنمو البكتريا المرضية , وقد اعتمدت الاجزاء الفعالة لقياس التركيز المثبط الادنى باستخدام طريقة الانتشار من القرص, وقد كانت التراكيز (4.5 , 5 , 2.5 ,3)مايكروغرام/مل هي التراكيز المثبطه الدنيا لبكتريا Escherichia coli , Pseudomonas aeruginosa, Staphylococcus aurues , Streptococcus agalactiae على التوالي. قيمت السمية الخلوية لمواد الايض الثانوي والمنقاة جزئيا لتحديد مدى فعاليتها المضاده للسرطان وبالاعتماد على فحص MTT (3 - (4, 5 - dimethylthiazol - 2 - yl) - 2 - 5 - diphenyl tetrazolium bromide) وباستخدام خطوط خلايا الثدي السرطانية وخطوط خلايا سليمة, وقد اظهرت النتائج بان التركيز 400مايكوغرام\ مل هو التركيز الامثل لتثبيط نمو الخلايا السرطانية بنسبه 60% مع المحافظة على 80% من الخلايا السليمة. اعتمدت الكروماتوغرافيا السائلة Liquid Chromatography - Mass Spectroscopy (LC - MS) في تنقية المركب الفعال وتوصيفة اذ اظهرت نتائج المخطط اللوني ان هنالك خمسة قمم وبالمقارنة مع الاطياف الكتلية للمركبات حسب المعهد الامريكي للمعايير والتقنية National Institute of Standards and Technology ان للمركب صيغة كيمياوية C18H32O2 ووزن جزيئي 282دلتن . درست الفعالية المضادة للاكسدة والمضادة للاورام لمستخلص Streptomyces sp. LHR 9 (المنقى جزئيا) في اناث الجرذان المختبرية المحفزة للاصابة بسرطان الثدي كيمياويا باستخدام مادة 7,12 dimethyl Benz (A) anthracene (DMBA) واظهرت النتائج ان لمستخلص LHR 9 Streptomyces sp. (المنقى جزئيا) القدره على المحافظة على تركيز الانزيمات المضادة للاكسدة في مصل الحيوانات المعاملة بمادة DMBA وبقيم مقاربة لما هي موجودة في مصل الحيوانات السليمة وقد تمثلت اثار ذلك بصغر وزن وحجم الورم فيى منطقة الثدي والتغيرات النسيجية الملحوظة, وعلى مستوى جزيئ ايضا اذ لوحظ وباستخدام تقنية Polymerase Chain Reaction - Single Strand Conformation Polymorphism(PCR - SSCP) التغيرات الوراثية الحاصلة للجينين ( Bcl - 2 وCaspase - 3) بفعل مادة DMBA ودور مستخلص Streptomyces sp. LHR 9 (المنقى جزئيا) في الحفاظ على الشكل الطبيعي للجينين اذ تبين ان هناك83.66% من الحيوانات السليمة و50% من الحيوانات المعاملة بالمستخلص البكتيري تمتلك جين Caspase - 3 بشكله الطبيعي بينما 66.66% من الحيوانات التي عوملت بماده DMBA فقط تمتلك جين Caspase - 3 من النوع الطافر وكذلك بالنسبة للجين Bcl - 2 اذ تبين ان هناك 78.66% من الحيوانات السليمة و60% من الحيوانات المعالجة بالمستخلص البكتيري تمتلك جين Bcl - 2من النوع الطبيعي بينما لوحظ وجود نفس الجين ولكن من النوع الطافر بنسبة 66.67% في الحيوانات المصابة بسرطان الثدي بتاثير مادة DMBA. | The present study included the collection of 100 soil samples from desert regions away from about 3 km from Al - Razzaza lake and agricultural regions at Karbala Province, Iraq. From these samples 26 and 36 actinomycetes isolates were obtained from desert and agricultural regions respectively . All actinomycetes isolates were tested for their antibacterial activity using primary screening against pathogenic bacteria by perpendicular streaking method .The results were showed that all the actinomycetes isolates were isolated from agricultural regions hadn't any antibacterial activity while the 26 isolates isolated from desert regions were had antibacterial activity in different spectra . Eight actinomycetes isolates from all the 26 desert regions isolates were selected for secondary screening due to their antibacterial activities with wide spectrum against pathogenic bacteria namely Gram positive (Staphylococ¬cus aureus and Streptococcus agalactiae) and Gram negative (Escherichia coli and Pseudomonas aeru¬ginosa) by the agar diffusion methods and the results revealed the selection of actinomycetes LHR 9 isolate for farther studies because it gave us the highest inhibition against the tested pathogenic bacteria growth. The active actinomycetes LHR 9 isolate was identified using several morphological and biochemical methods. The morphological characterization was involved the study of aerial and substrate mycelium on many International Streptomyces Project agar medium and using light microscopy at 1000X and 400X to study the mycelium morphology, as well as using the scanning electron microscope (SEM) to examine the spore surface. The results exhibited that the isolate had the aerial mycelium which formed unfragmented, branched, looped and rectus - flexibilis hyphae type bearing non - motile spores with smooth surface. In addition to results of biochemical tests we could revealed that the isolate was belong to Streptomyces genus . The active isolate Streptomyces sp. LHR 9 was selected for optimization critical cultural and nutritional parameters for increasing the antibiotic production titer in fermentation medium (Soybean broth medium), the results showed the dextrose as carbon source , peptone as nitrogenous source and K2HPO4 as a phosphate source with fermentation cultural condition included ; temperature of 35 °C, pH 7 with agitation rate 200 rpm for 7 days as incubation period gave high values in active secondary metabolites production. The antibacterial compound from fermentation medium was extracted using liquid - liquid extraction method with various organic solvents n - propanol, chloroform, ethyl acetate, acetone, methanol and ethanol) 1 : 1 (v/v) . the results was revealed the ethyl acetate the most efficient in extraction . The Streptomyces sp. LHR 9 crude extract was purified by using silica gel column (1.6 X 14) chromatography. Chloroform and methanol (4 : 1) (v/v), was used as an eluting solvent. The active fractions ( had the antibacterial activity ) were selected for determination the minimum inhibitory concentration and evaluation the cytotoxic activity using MTT (3 - (4, 5 - dimethylthiazol - 2 - yl) - 2 - 5 - diphenyl tetrazolium bromide) assay. The results of the MIC of partially purified Streptomyces sp. LHR 9 extract were 4.5 µg/ml for Escherichia coli, 5 µg/ml for Pseudomonas aeruginosa, 2.5µg/ml for Staphylococcus aurues and 3µg/ml for Streptococcus agalactiae . In vitro screening for cytotoxic activity was done by MTT assay for evaluation the anticancer activity of the partially purified antibacterial compounds produced by Streptomyces sp. LHR 9. The cytotoxic activity of the partially purified Streptomyces sp. LHR 9 extract was determined against established MCF - 7 cell line ( breast cancer cell lines ) and WRL cell as a representative of normal breast cell line, depending on their viability ratio. The viability of MCF - 7 cell line was decreased dramatically with the increasing in extract concentration in the same time the viability of WRL cell was decreased in slowly manner. The using of multiple purification methods Liquid Chromatography - Mass Spectroscopy (LC - MS) along with a sensitive measuring method and possibly isolation of these compounds should allow us to evaluate the entire potential of secondary metabolites production, the results from LC - MS chromatogram of the partially purified Streptomyces sp. LHR 9 extract showed five peaks, on comparison of the mass spectra of the constituents with the National Institute of Standards and Technology( NIST) library the compound was had the Formula : C18H34O2 and molecular weight : 282 D. The partially purified Streptomyces sp. LHR 9 extract was evaluated for its in vivo antioxidant and antitumor activity depending on the ability of 7,12 dimethyl Benz (A)anthracene (DMBA) to inducing breast tumor in female rat model, the results revealed the partially purified Streptomyces sp. LHR 9 extract had the ability to keeping the enzymatic antioxidant in approximately its natural concentrations (as the same concentrations in serum of negative group) in serum of tested rats which were induced breast cancer by DMBA and treated with partially purified Streptomyces sp. LHR 9 extract, so these results were more studied on histological plane and the results of that were achieved by decreasing in weight and size of the breast tumor of tested rats and other histological change in breast tissue. In addition to that partially purified Streptomyces sp. LHR 9 extract effect was more studied on molecular plane depending on the Bcl - 2 and Caspase - 3 genes mutation using Polymerase Chain Reaction - Single Strand Conformation Polymorphism ( PCR - SSCP) analysis. The results were two conformations polymorphism in both Caspase - 3 gene ( about 83.66 % of negative group and 50% of treated group had three bands (wild type) where's positive control had 66.66% four bands (mutant type)) and Bcl2 gene (the wild type had one band such as negative group was 78.66% and test group 60%, compared with positive group (60.67%) have two bands(mutant type)). so these results suggest the active apoptotic property of Caspase - 3 and Bcl - 2 and the role of partially purified Streptomyces sp. LHR 9 extract effect in keeping them in their wild type.

تاثير مستخلص نبات الكجرات Hibiscus sabdariffa على عوامل الضراوة لبكتيريا المكورات العنقودية الذهبية المعزولة من التهابات المجاري البولية == Effect of Hibiscus sabdariffa Extract on the Virulence Factors of Staphylococcuss aureus Isolated from Urinary Tract Infection

Author name: صمود عبد الكاظم سلمان عبد
Supervisor name: وجدان رضا تاج الدين
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تم جمع 163 عينة ادرار من المرضى المصابين بالتهاب المجاري البولية لكلا الجنسين باعمار تتراوح من شهر واحد الى 60سنة من المراجعين في مستشفى القاسم ومستشفى الهاشمية العام خلال الفترة من اب 2016 الى كانون الاول 2016. وقد وجدت 112 (68.71%) عينة اعطت نموا بكتيريا ومن هذه النسبة وجدت36 (32.14%) عزلة موجبة لصبغة غرام و76(67.86%) سالبة لصبغة غرام . وقد تم تشخيص 23(20.5%) عزلة بكتيرية تعود للبكتريا العنقودية الذهبية Staphyllococcus aureus، تم تشخيص جميع هذه العزلات مظهريا ومجهريا وحيويا.تم اختبار حساسية المضادات الحيوية لجميع هذه العزلات. وكانت جميعها مقاومة 100% للامبسلين، يليها سيفوكسيتين 91.3 %. واظهرت هذه العزلات اعلى حساسية للمضاد الحيوي الكليندامايسين 78.2% , في حين كانت نسبة المقاومة للاميكاسين هي39.1% . وقد وجد ان نسبة المقاومة للتراسايكلين هي 47.8% . وقد اظهرت النتائج ان 20 (86.9%)عزلة مقاومة للمضاد الحيوي المثسيلين (MRSA) وقد تم الحصول على هذه النتيجة باستخدام تقنية تفاعل انزيم البلمرة التسلسلي (PCR).درست فعالية المستخلص المائي الحار والبارد لاربعة نباتات (كاس الكجرات جذور العاقول وقشور الرمان واوراق الخباز) ضد البكتريا العنقودية الذهبية ووجد من خلال التحليل الاحصائي وجود فروق معنويه 0.05 P< في حالة المستخلص المائي البارد للكجرات حيث اعطى فعالية تثبيطية تجاه هذه البكتريا لذا تم اختيار هذا المستخلص لدراسة تاثيره على عوامل الضراوة لهذه البكتريا. بعدها تم التحري عن المركبات الموجودة في هذا المستخلص وقد اظهرت النتائج ان المستخلص المائي يحتوي كلا من الفينولات , القلويدات , الفلافونات والتانينات.درست فعالية المستخلص المائي البارد الخام لكاس الكجرات المضادة للبكتريا بطريقه الانتشار بالحفر (agar well diffusion method) باستخدام التراكيز 2,5 و5و10و20و40و80 ملغم / مل. بعدها تم تحديد MIC لهذا المستخلص بطريقه الانتشار بالحفر( The modified broth macro dilution method) فكانت قيمته 25ملغم/مل.وقد اظهر المستخلص المائي البارد فعالية تثبيطية تجاه البكتريا العنقودية الذهبية بقطر 18 ملم بتركيز 40و80 ملغم /مل .تم استخلاص المركبات الفينولية من المستخلص المائي البارد للكجرات بعدها تم استخدام تقنيه الفصل الكروموتوكرافي عالي الجودة لعزل وتشخيص المركبات الفينوليه وقد تم الحصول على عدة مركبات. بعدها تم دراسة الفعالية التثبيطية لهذه المركبات ووجد بان المركب الفينولي الكويرسيتين قد اعطى اعلى فعالية تثبيطية تجاه البكتريا العنقودية الذهبية بتركيز 4 ملغم /مل وايضا تم تحديد MIC لهذا المركب وهي 2ملغم /مل .كما درس تاثير المستخلص الخام والكويرسيتين على عوامل الضراوة وقد اظهرت النتائج ان كلا منهم قد كان له تاثير على انتاج الهيمولايسين وعلى فعاليته وذلك بعد تنمية البكتيريا مع قيمة MIC للمستخلص الخام والكويرسيتين كلا على انفراد.كذلك تم دراسة تاثير هذه المستخلصات على تكوين البايوفيلم من قبل البكتريا وقد وجد ان 15 عزلة بكتيرية منتجة للبايوفيلم قد تحولت الى غير منتجة او الى منتجة ولكن من النوع الرقيق بعد تنميتها مع هذين المستخلصين.وقد اظهرت النتائج ايضا ان المستخلص الخام والكورسيتين للكجرات قد اثرا على فعالية كلا من الستافيلوكاينيز والبروتيز.تم التحري عن انتاج السموم المعوية من قبل البكتريا العنقودية الذهبية باستخدام تقنية الفار الرضيع وقد وجد بان جميع العزلات غير منتجة لهذه السموم.كذلك تم دراسة تاثير هذين المستخلصين على تسرب ايون البوتاسيوم من الخلايا البكتيرية خلال فترات زمنية معينة وقد وجد بان هذين المستخلصين قد عملا على زيادة تسرب هذا الايون من الخلايا البكتيرية مما يدل على ان هذين المستخلصين قد اثرا على نفاذية الغشاء الخلوي للخلية البكتيرية .كذلك وجد ان الجرعة القاتلة لنصف حيوانات التجربة قد زادت من 5,6 × 106 الى 3,9× 107 بعد معاملة البكتريا بالمستخلص المائي البارد لكاس الكجرات . ايضا تم دراسة تاثير المستخلصين الخام والكورسيتين على معايير الدم في الفاران المعاملة بالعالق البكتيري الذي يحتوي مستخلص نباتي والفاران المعاملة بالعالق البكتيري الذي يحتوي على الكورسيتين وقد وجد بان المستخلص الخام كان له تاثير اكبر من الكورسيتين في تحسين معايير الدم مقارنة بالبكتريا المعاملة بالعالق البكتيري بدون مستخلص نباتي ,كما تم دراسة امكانية استخدام النبات كعامل مختزل عن طريق معرفة الفعالية ضد التاكسدية وكانت قيمتها 3566,97 مايكرو مولاري بواسطة استخدام اختبار (CUPRAC). ايضا تم دراسة الفعاليه الخلويه السمية للمستخلص الخام على خلايا الكبد الطبيعية للانسان وعلى الخلايا السرطانية في الثدي وقد وجد بان هذا المستخلص ليس له فعالية سمية على خلايا الكبد الطبيعية وايضا له تاثير قاتل للخلايا السرطانية في الثدي .

دراسة فعالية انزيمات الفوسفاتيز القاعدي, الاسبارتيت ناقل مجموعة الامين واللاكتيت منزوع الهيدروجين في البلازما المنوية للمرضى العقيمين == Study the activity of Alkaline Phosphatase, Lactate Dehydrogenase and Aspartate Aminotransferase in the Seminal Plasma of Infertile Men

Author name: كرار صالح مهدي جاسم الخفاجي
Supervisor name: فارس ناجي عبود الهادي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تعتبر بلازما السائل المنوي مهمة في العمليات الحيوية للنطف لابقائها حية وانتقالها خلال القناة التناسلية الانثوية, كما وتحتوي على العديد من المكونات المختلفة ومنها الانزيمات مثل انزيم الفوسفاتيز القاعدي (ALP) واسبارتيت ناقل مجموعة امين (AST) واللاكتيت منزوع الهيدروجين (LDH) التي تدخل في العمليات الايضية المختلفة لتجهيز الطاقة اللازمة لحركة النطف. اجريت الدراسة على مرضى عدم الخصوبة الذين راجعوا مختبر مستشفى بابل للنسائية والتوليد والمختبرات الاهلية في محافظة بابل, شملت الدراسة 122 عينة من السائل المنوي لمرضى عدم الخصوبة و10 عينات للرجال الخصبين, خلال المدة من تشرين الاول 2016 الى اذار 2017. هدفت الدراسة الى مقارنة مستويات فعالية الانزيمات المذكورة في البلازما المنوية لحالات عدم الخصوبة المشمولة بالدراسة وهي مجاميع سويي النطف ووهن النطف ووهن وتشوه النطف وقلة النطف وقلة ووهن النطف وانعدام النطف مع مجموعة الخصوبة, بالاضافة الى دراسة العلاقات بين الانزيمات مع معالم النطف وتشمل حركة النطف عند مستوى( ا+ب) وتركيز النطف والنسبة المؤية للنطف غير السوية . اظهرت النتائج فروق معنوية (P˂0.05) في مستوى فعالية انزيم الفوسفاتيز القاعدي في المجاميع المختلفة حيث لوحظ اعلى مستوى في مجموعة الخصوبة تتبعها مجموعة سويي النطف ,بينما لم يلاحظ فروق معنوية (P˃0.05) بين مجموعتي وهن النطف ووهن وتشوه النطف, كما لم تظهر النتائج فروق معنوية بين مجاميع قلة النطف وقلة ووهن النطف وانعدام النطف التي اظهرت اقل مستوى للفعالية. بينت النتائج فروق معنوية (P˂0.05) في معدل فعالية انزيم اسبارتيت ناقل مجموعة امين في مجاميع عدم الخصوبة المختلفة, حيث كان اعلى معدل للفعالية في مجموعة الخصوبة ومجموعة سويي النطف ولم يلاحظ فروق معنوية (P˃0.05)بين مجموعتي انعدام النطف ووهن وتشوه النطف, كما لم يلاحظ فروق معنوية (P˃0.05) بين مجاميع وهن النطف وقلة النطف وقلة ووهن النطف التي اظهرت اقل مستوى للفعالية. كما واظهرت النتائج فروق معنوية (P˂0.05) في معدل فعالية انزيم لاكتيت منزوع الهيدروجين بين مجاميع عدم الخصوبة مقارنة مع مجموعة الخصوبة وسويي النطف التي اظهرت اعلى مستوى للفعالية , في حين كان اقل مستوى للفعالية في مجاميع قلة النطف وقلة ووهن النطف وانعدام النطف بينما لم يظهر فرق بين مجموعتي وهن وتشوه النطف ووهن النطف. كذلك بينت النتائج العلاقات بين مستوى فعالية الانزيمات ومعالم النطف حيث لوحظت علاقة سلبية بين فعالية انزيم الفوسفاتيز القاعدي وحركة النطف مستوى ا+ب في مجاميع سويي النطف وقلة ووهن النطف مقارنة بالعلاقات الايجابية في مجاميع وهن النطف ووهن وتشوه النطف اضافة الى مجموعة الخصوبة, كما ان لذات الانزيم علاقة سلبية مع تركيز النطف في مجموعتي سويي النطف وقلة النطف بينما ظهرت العلاقات الايجابية في مجموعة الخصوبة وقلة ووهن النطف, كما تم ملاحظة العلاقات السلبية لفعالية الانزيم مع النسبة المؤوية لتشوه النطف في كل من مجموعة الخصوبة وسويي النطف اضافة الى مجموعة وهن وتشوه النطف. نلاحظ ايضا من خلال النتائج وجود علاقة سلبية معنوية (P˂0.01) في مجموعة سويي النطف وعلاقة ايجابية معنوية ((P˂0.01 في مجموعة وهن النطف بين مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين وحركة النطف مستوى (ا+ب), كذلك نلاحظ وجود علاقة سلبية في مجموعة وهن وتشوه النطف بينما اظهرت مجموعة الخصوبة وقلة ووهن النطف علاقة ايجابية, كذلك بينت النتائج وجود علاقة ايجابية معنوية (P˂0.05) في مجموعة سويي النطف بين فعالية الانزيم المذكور وتركيز النطف, اما مجموعتي قلة النطف وقلة ووهن النطف اظهرت علاقة سلبية بينما كانت العلاقة الايجابية في مجموعة الخصوبة, بينت النتائج ايضا وجود علاقة سلبية معنوية (P˂0.05) في مجموعة سويي بين فعالية انزيم اسبارتيت ناقل مجموعة امين والنسبة المؤوية للنطف المشوهة, اما العلاقة الايجابية فظهرت في مجموعة وهن وتشوه النطف والعلاقة السلبية في مجموعة الخصوبة. اظهرت النتائج وجود علاقة سلبية بين فعالية انزيم لاكتيت منزوع الهيدروجين مع حركة النطف مستوى (ا+ب) في مجموعتي سويي النطف وقلة ووهن النطف بينما لوحظت العلاقات الايجابية في مجاميع الخصوبة ووهن النطف ووهن وتشوه النطف, بينت النتائج ايضا وجود علاقة سلبية معنوية (P˂0.05) بين فعالية الانزيم وتركيز النطف في البلازما المنوية لمجموعة قلة ووهن النطف بينما العلاقات السلبية كانت في مجاميع سويي النطف وقلة النطف بالمقارنة مع العلاقة الايجابية في مجموعة الخصوبة , كذلك بينت النتائج وجود علاقة سلبية بين فعالية الانزيم والنسبة المؤوية للنطف المشوهة في مجاميع وهن وتشوه النطف وسويي النطف ومجموعة الخصوبة. كذلك اظهرت النتائج العلاقات بين الانزيمات في المجاميع المختلفة فكان لفعالية انزيم الفوسفاتيز القاعدي علاقة ايجابية مع مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين في البلازما المنوية لمجاميع وهن النطف ووهن وتشوه النطف وقلة النطف , كذلك العلاقة السلبية لوحظت في مجاميع سويي النطف وقلة ووهن النطف ومجموعة الخصوبة , بينما اظهرت النتائج وجود علاقة سلبية معنوية (P˂0.05) في مجموعة انعدام النطف. نلاحظ ايضا وجود علاقة ايجابية بين مستوى فعالية انزيم الفوسفاتيز القاعدي وانزيم لاكتيت منزوع الهيدروجين في مجموعة سويي النطف بالمقارنة مع مجموعة الخصوبة وباقي مجاميع قلة الخصوبة التي اظهرت علاقات سلبية بين فعالية الانزيمين. بينت النتائج ايضا وجود علاقة سلبية بين مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين ولاكتيت منزوع الهيدروجين في البلازما المنوية لكل من وهن وتشوه النطف وقلة ووهن النطف عندما تقارن بالعلاقة الايجابية في مجاميع الخصوبة وسويي النطف وقلة النطف وانعدام النطف, كذلك بينت النتائج وجود علاقة ايجابية معنوية (P˂0.05) بين مستوى فعالية الانزيمين في مجموعة وهن النطف. | A wide variety of biochemical components and enzymes are presented in the seminal plasma, the enzymes such as alkaline phosphatase (ALP), aspartate amino - transaminase (AST), and lactate dehydrogenase (LDH) are proved to be important for various metabolic processes which provide energy for livability, motility, and fertility of spermatozoa. This study aimed to compare the activity levels of Alkaline phosphates, Aspartate - aminotranferase and Lactate dehydrogenase enzyme in the seminal plasma of infertility patients include : normozoospermia, asthenozoospermia, terato - asthenozoospermia, oligozoospermia, oligo - asthenozoospermia, azoospermia and fertile men, in addition to study of inter relationships between these enzymes and with sperm parameters include : sperm concentration, motility )grade A+B(, and morphologically abnormal sperm. This study was conducted in the laboratory of Babylon Maternity and children teaching hospital and private laboratories during the period from October 2016 to March 2017. The study included 122 samples from different types of infertility and 10 samples from fertile men The results showed that there was a significant difference (p˂0.05) between the different groups of alkaline phosphatase enzyme. The fertile men have the highest level, followed by normozoospermia. No significant differences were observed between the oligozoospermia, oligo - asthenozoospermia and azoospermia which have the lowest level of activity and no highly significant differences between asthenozoospermia and terato - asthenozoospermia. A significant increase (P˂0.05) in the level of aspartate - aminotransferase enzyme between the different groups, the highest level of activity was observed in the group of fertile and normozoospermia. While no significant differences (P˃0.05) between the groups of azoospermia and terato - asthenozoospermia, the results also showed no significant differences (P˃0.05) between the groups of asthenozoospermia, oligozoospermia and oligo - asthenozoospermia which owns the lowest level of activity. The results revealed significant increase (P˂0.05) in an average of the activity level of Lactate dehydrogenase enzyme between the different groups, the highest level was shown in the groups of fertile and normozoospermia and the lowest level in the azoospermia, oligozoospermia and oligo - asthenozoospermia but asthenozoospermia and terato - asthenozoospermia have the same level of activity. The results showed a significant negative correlation (P˂0.01) between AST activity and sperm motility (grade A+B) in the normozoospermic patients, and significant positive correlation (P˂0.01) in the group of asthenozoospermia, also the results revealed significant positive correlation (P˂0.05) in the normozoospermic men between AST activity and sperm concentration. The morphological abnormal sperm has significant negative correlation (P˂0.05) with AST activity in the group of normozoospermia, and it was revealed a significant negative correlation (P˂0. 05) between LDH activity and sperm concentration in the seminal plasma of oligo - asthenozoospermia. Also the results showed a significant negative correlation (P˂0.05) between the activities of ALP and AST in the azoospermia, and significant positive correlation (P˂0.05) in the seminal plasma of asthenozoospermia between AST and LDH activity. It was concluded the importance of ALP, AST and LDH levels in detecting the ability of gland secretion and normal semen components

التباين الوراثي في جينات TNF - ?, VEGF - A and IL - 10 المصاحبة لداء الصدفية == Genetic Polymorphism in TNF - ?, VEGF - A and IL - 10 genes associated with Psoriaasis

Author name: خالد عبد الكاظم هادي الطائي
Supervisor name: علي حمود السعدي | وسام علي امين عوض
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: هدفت هذه الدراسة الى تقصي بعض التغايرات الوراثية لكل من (TNF - α, VEFGF and IL10) لدى مرضى داء الصدفية وعلاقتها بشدة الاصابة باستخدام تقنيات تفاعل البلمرة المتسلسل وتباين اطوال قطع التقيد . بينما قدر مستوى الحركيات المناعية باستخدام تقنية الايلايزا.اجريت هذه الدراسة في الفترة من نيسان 2016 الى اذار 2017، حيث جمعت العينات مرضى داء الصدفية المراجعين لمستشفى مدينة مرجان الطبية، محافظة بابل / العراق. شملت الدراسة 64 عينة لمرضى داء الصدفية 40) ذكر و24 انثى) يبلغ متوسط اعمارهم (9 - 70 سنة)، كما شملت الدراسة 38 شخصا من الاصحاء (21 ذكر و17 انثى) يبلغ متوسط اعمارهم 15 - 65 سنة كمجموعة السيطرة جارت مجاميع المرضى.اظهرت النتائج زيادة معنوية في مستوى كل من TNF - α وIL10 في المصل لدى مرضى داء الصدفية مقارنة بمجموعة السيطرة (P<0.01) . كما اظهرت الدراسة ارتباط معنوي بين مستوى TNF - α وشدة الاصابة ( - r=0.49, p=0.0001) بينما كان معامل الانحدار عكسي غير معنوي بين مستوى IL10 في المصل وشدة الاصابة ( - r= 0.29, P=0.0109) , وكان الانحدار عكسي معنوي بين مستوى IL10 و( - r= - 0.29) (p=0.0028) TNF - α. كما اظهرت النتائج ارتفاعا معنويا (P<0.01) في مستوى VEGF في المصل لدى مرضى داء الصدفية مقارنة بمجموعة السيطرة بينما كان الانحدارغير معنويا بين مستوى VEGF وشدة الاصابة( - r= - 0.05) .اظهرت النتائج وجود ثلاث انماط وراثية للتغايرات في موقع الجين TNF - α - 308 حيث كانت النسب AA 5 (7.81%) ,AG 24 (37.50% وGG 35 (54.69% في مجموعة السيطرة كانت 10 (26.31%) , 16 (42.11% و12 (31.58% اما توزيع الانماط الوراثية الناتجة من تحليل جين VEGF+405 كان النمط الوراثي CG هو السائد 24 (37.05) لدى مرضى الصدفية والنمط الوراثي CC هو الاقل ظهورا 1 (1.56%).. اضافة الى ذلك اظهر نتائج تحديد تتابع النيكليوتيدات للموقع الوراثي IL10 - 1082 نمطين وراثين حيث كان النمط الوراثي GG هو الاكثر تواجدا لدى مرضى داء الصدفية ( 47.5%) والنمط GA بنسبة (28.5%) مقارنة بمجموعة السيطرة التي جاءت جميعها بالنمط الوراثي GG. | Psoriasis is an immune mediated skin disease with a wide - world prevalence involves both genders and different age, it is a multifactorial disease influenced by genetic and environmental factors. The current study aims to evaluate the association of (Interleukin 10, Tumor Necrosis Factor - α and Vascular Endothelial Growth Factor) genes polymorphism in psoriasis. Single Nucleotide Polymorphism (SNPs) determined by Polymerase Chain Reaction (PCR), restriction fragment length polymorphism (PCR - RFLP) and DNA sequencing techniques, while there serum levels determined by ELISA. This case - control study is done in a period of March 2015 to December 2017, where the samples collected from Marjan Medical City in Babylon Province. The number of samples was (64) patients psoriasis (40 males and 24 females ) with an average age ( 9 - 70 year), (50) of them were with type 1 psoriasis and (14) type 2. In addition, the study included 38 apparently healthy people who were (21 males and 17 females) with an average age (15 - 65 year), as control matched with disease group. The present study revealed a significant increasing (P<0.01) of Tumor Necrosis Factor - α (TNF - α) and Interleukin 10 (IL10) in patients compare with controls. In addition, there is a significantly regression between severity of disease and TNF - α serum level (r =0.49, p=0.0001) and non - significant invers regression with IL10 serum level (r= 0.29, P=0.0109). In addition, the results established an A significant negative correlation which has been found between IL10 and TNF - α (r= - 0.29) (p=0.0028). Physiological, the study shows significant increasing in Vascular Endothelial Growth Factor (VEGF) level in patient compare with control (P<0.01). There is no correlation between Vascular Endothelial Growth Factor (VEGF) serum level and severity or onest of disease (r= - 0.05).Genetically, analysis of the Single Nucleotide Polymorphisms PCR - RFLP genotyping for TNF - α - 308 G/A (rs1800629) SNP, Genotype distribution in patient were GG 35 (54.69%), AG 24 (37.50%) and AA 5 (7.81%) while in control were AG16 (42.11%), GG 12 (31.58%) and AA10 (26.31%).The genetic analysis of the Single Nucleotide Polymorphisms of VEGF +405 SNP, genotype distribution CC homozygous was predominant in patient 39(60.94%) and GG homozygous was 24 (37.05) While the GCwas the least 1 (1.56%). Comparing with the control group was CG 18(47.37%), CC 13(34.21%) and GG 7(18.42%).On the other hand , the statistical analysis for the role of genotyping for TNF - α - 308 SNP in the Serum levels of TNF - α were different between TNF - 308 AA (126.90 ± 14.96) patients and TNF - α GA(106.55 ± 16.42) and GG (57.94 ± 7.72) genotypes (p < 0.01). Analysis for the role of genotyping for VEGF +405 SNP non - significant difference between homozygous CC (408.30 ± 0.00), homozygous was GG (326.00 ± 34.81) and heterozygous CG (376.41 ± 58.63).This result promotes that the both of TNF - α - 308 SNP polymorphism and VEGF +405 SNP strongly implicated in the pathogenicity, severity and onest of psoriasis.PCR - sequencing for IL10 - 1082 A/G (rs1800896) locus shows a significant difference of percentage distributions of alleles and genotypes for IL10 - 1082 (rs1800896) locus between patient and control, GG homozygous was predominant in patient (71.5%) while the AG heterozygous was (28.5 %). Comparing with control group GG (100%).

تحضير وتوصيف المركبات النانوية ودراسة الفعالية المضادة للبكتريا == Synthesis, Characterization and Antibacterial Activity of Synthesized Nanoparticles

Author name: علي جبار عبد الحسين رضا الكواز
Supervisor name: فريال جميل عبد عطية | اياد فاضل محمد القيم
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

الفعالية الحياتية لبعض مستخلصات النباتات الطبية على بعض انواع البكتريا والتعبير الجيني لانزيمات الكيراتينز المنتج من قبل Trichophyton rubrum == Biological Activity of some Medicinal Plant Extracts on some Bacteria and Gene Expression of Keratinases Produced from Trichophyton rubrum

Author name: علي جليل عبيد حسن عينون
Supervisor name: جواد كاظم عبود علي الجنابي | وجدان رضا محمود محمد تاج الدين
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The present study aimed to search for safe and effective antifungal agents through investigation of the phytochemical characterization and bioactive properties of medicinal plants (Pimpinella anisum essential oil and Moringa oleifera and Malva sylvestris leaf extracts) and their effect on gene expression of keratinases produced by T. rubrum using Real Time PCR.Phytochemical analysis of active materials of P. anisum essential oil and M. oleifera leaf extracts were carried out, through TLC accompanied autobiography, high performance liquid chromatography (HPLC) and GC - MS analyses were proceeded to relate the chemical profile with their antifungal activity. Also, the cytotoxic effects of active compound and crude extract for both plant extracts were determined using MTT (3 - (4,5 - dimethylthiazol - 2 - yl) - 2,5 - diphenyltetrazolium bromide dye) assay. Screening the antifungal activity of Pimpinella anisum essential oil, Moringa oleifera leaf extracts and four traditional antifungal agents against growth and development of two strains of T. rubrum differed in their virulence were conducted. MIC for crud extracts and antifungal agent were also determined using microdilution plate, moreover, the effects of crud extracts and active compounds on gene expression was evaluated.Qualitative TLC, HPLC analysis for the anise essential oil extract revealed the presence of anethole which was identified as a main volatile compound in this extract which was identified as anethole. GC - MS analysis also revealed that trans - anethole is the major compound (96.8%), then Himachalene (1.84%), other components were also present but less than 1% e.g. Estragole, cyclohexene and 2 - Methoxy - 5 - (1 - propenyl) phenol. On the other hand, LC - MS analysis were showed the existence of that keratinase inhibitor (extracted from Moringa oleifera leaf)IICryptochlorogenicacid (C16H18O9), Astragalin (C21H20O11), so the presences of these compounds reflected the inhibitory effects on keratinase enzyme.The results upon screening, revealed that the anise oil inhibited both strains of T. rubrum, since the growth inhibition for first strain were 21, 30 and 39 mm at 15.6, 31.2 and 62.5 μl/ml respectively, while in second strain were 24, 32 and 39 mm at 15.6, 31.2 and 62.5 μl/ml respectively. The tested strains of this fungus revealed substantial sensitivity pattern toward crude extract of essential oil and anethole as well. Results showed that there was considerable growth inhibition for both strains of T. rubrum at minimal inhibitory concentrations (MIC) between 15.6 μg/mL for crude oil and 7.5 μg/mL for anethole. The inhibition in radial growth due to the effect of anise essential oil increased from 56% at 3rd day to 86% at the 7th day. Sporulation was substantially decreased by anise oil treatment. Anise oil was significantly inhibited conidial germination for both strains. Treatment with anise oil induced morphological changes in the conidial group where the conidia were absent in treated sample. Protease inhibitor isolated from mature leaves of M. oleifera showed great ability to inhibit keratinase activity of T. rubrum.MTT assay revealed that anethole is safe as phototherapeutic agents, when it is having no effects on normal cell, but shown anticancer activity against cancer cell.Anise oil, anethole, M. oleifera crud inhibitor, Cryptochlorogenic acid and Astragalin showed high inhibitory effects on gene expression of keratinase enzyme in both strains of T. rubrum KP979791 and KP979787.

تاثير السموم الكبدية الـMicrocystin - LR على الصفات البايوكيميائية والجزيئية في الكارب الاعتيادي والجرذ == The Effects of Hepatotoxic Microcystin - LR on Biochemical and Molecular Characteristics of Cyprinus carpio and Rattus rattus

Author name: ماهر محمـــد خضـــيري الجبــــــوري
Supervisor name: مؤيد جاسم ياس العماري | اياد محمد جبر المعموري
General topic: Biology
Specific topic: Zoology - Pollution
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: صممت الدراسة الحالية لدراسة تاثير السموم الكبدية الـMicrocystin - LR على الصفات البايوكميائية والجزيئية في الحيوانات المختاره (الكارب الاعتيادي والجرذ) حيث كان تركيز microcystin - LR المنقى من Anabaena circinalis وOscillatoria splendida 74.832 مايكروغرام / مل61.85 مايكروغرام/ مل على التوالي الذي تم الكشف عنه وجمعه بواسطة الكروماتوكرافية السائلة فائقة الاداء التحضرية بينما كان تركيزه في Westiellopsis prolifica وStigonema sp هو 28.385 مايكروغرام/مل و23.591 مايكروغرام/مل على التوالي. استخدمت تراكيزالــmicrocystin - LR للجرذ واسماك الكارب الاعتيادي عن طريق حقنها تحت الغشاء البريتوني خلال التعرض الحاد الحادة (96 ساعة) , كانت ( 60 , 40 , 20 ) مايكروغرام /200 غرام من زون الجسم , ومن ثم تحديد الجرعة المتوسطة المميتة للجرذ واسماك الكارب الاعتيادي وكانت (52.48 و67.95) مايكروغرام / 200 غرام من وزن الجسم على التوالي . بينما في التعرض المزمن ( 30 يوم ) ،كانت التراكيز المستخدمة هي (3 و6 و9) مايكروغرام/ 200 غرام من زون الجسم. بينت نتائج الدراسة الحالية زيادة معنوية في كل المؤشرات البايوكيميائية مع زيادة الجرعة الــMicrocystin - LR في دم وكبد الجرذان واسماك الكارب الاعتيادي خلال التعرض الحادة ، لكن خلال التعرض المزمن ايضا ازدات كل المؤشرات البايوكيميائية زيادة معنوية مع زيادة تركيز الــMicrocystin - LR ، بينما قلت تركيز مضادات الاكسدة الكلية والسايتوكروم P450 والفوسفيتيز القاعدي في الدم والكبد والـGOT في دم الجرذ بشكل معنوي مع زيادة تركيز الجرعة الــmicrocystin - LR بالمقارنة مع مجموعة السيطرة ، بينما في اسماك الكارب الاعتيادي ، تركيز فيتامين C والسايتوكروم P450 في الدم والكبد ، والفوسفتيز القاعدي والـGPT في الكبد حيث قل بشكل معنوي مع زيادة تركيز الـmicrocystin - LR بالمقارنة مع مجموعة السيطرة. بينت ايضا نتائج الدراسة الحالية الحصول على ست انواع من التشوهات الكروموسومية هي الكروموسومات الحلقية والكروماتيد المتكسر وكروموسومات المتقطعة وكروموسومات القلة وثنائية المركز خلال الفترة المزمنة في نخاع العظم للجرذ والكبد الاسماك الكارب الاعتيادي ، فان عدد كل نوع من التشوهات الكرموسومية في الجرذ واسماك الكارب الاعتيادي ازدادت بشكل معنوي مع زيادة تركيز الــmicrocystin - LR ، اظهر التحليل الاحصائي ارتباط معنوي موجب بين التشوهات الكروموسومية والمؤشرات البايوكيميائية ومؤشرات تحطم الـDNA ، اما دليل الانقسام الخلوي ازداد بشكل معنوي مع .زيادة الجرعة في نخاع عظم الجرذ وكبد الكارب الاعتيادي بالمقارنة مع مجموعة السيطرة . المؤشرات الجزيئية للــDAN المتحطم كالطول المذنب Comet lengthو طول الذنب Tail length وهجرة الذنب Tail moment في دم وكبد الجرذ واسماك الكارب الاعتيادي ، والتي ازدادت بشكل معنوي مع زيادة جرعة الــmicrocystin - LR ، ايضا اظهرت النتائج ارتباط معنوي موجب مع المؤشرات البايوكيميائية والتشوهات الكرموسومية ، ايضا بينت الدراسة الحالية بان تحطم الـDNA في الكبد اكثر مما في الدم . | The presents study was designed to study the effects of hepatotoxic microcystin - LR on biochemical and molecular characteristic of selected animals (Cyprinus carpio and Rattus rattus) Whereas the concentration of microcystin - LR obtained from Anabaena circinalis and Oscillatoria splendida that purification and collection by utilizing preparative high performance liquid chromatography was 74.832 µg/ml and 61.85 µg/ml respectively. While its concentration in Westiellopsis prolifica and Stigonema sp was 28.385 µg/ml and 23.591 µg/ml respectively The concentrations of toxin that used for rats (Rattus rattus) and common carp (Cyprinus carpio) via intraperitoneally injection during acute period (96 h) was (20, 40, 60) µg/200g body weight and then determination of median lethal dose for rats and C. carpio was (52.48, 67.95) µg/200g body weight respectively, While in chronic period (30 days), the concentrations used for above animals was (3, 6, 9) µg/200g body weight . The results of presents study was showed all biochemical markers significantly increased with increasing dose of microcystin - LR in blood and liver of rats and C.carpio during acute period, but in chronic period also all biochemical markers in blood and liver of rats and C.carpio have been significantly increased with increasing concentration of microcystin - LR, Whereas the total antioxidant concentration, Cytochrome P450 and Alkaline phosphatase in blood and liver, and GOT in blood of rats were significantly decreased with increasing concentration of dose of microcystin - LR as compared with control groups, While in C. carpio, the concentration of vitamin C and Cytochrome P450 in blood and liver, and Alkaline phosphatase and GPT in liver were significantly decreased with elevated concentration of microcystin - LR as compared with control groups. The presents study was shown six type of chromosome aberration which are ring chromosomes, chromatid break, fragmented chromosomes, aneuploidy and dicentric chromosomes that are obtained during chronic exposure period in bone marrow of rats and liver of C. carpio, the number of each type of chromosome aberration in rat and C .carpio have been significantly increased with increasing microcystin - LR concentration, the statistical analysis appeared positive significant correlation between chromosome aberration, biochemical markers and marker of DNA damage. The mitotic index was significantly increased with increasing microcystin - LR concentration in bone marrow of rats and in liver of C .carpio as compared with control groups. The molecular makers of DNA damage such as comet length, tail length and tail moment in blood and liver of rats and C .carpio were significantly increased with increasing concentration of microcystin - LR, also appearance of results positive significant correlation with biochemical markers and chromosome aberration and also presents results shown the DNA damage in liver more than in blood.

الكشف عن الجينات المقاومة للكاربابنيم لبكتريا Acinetobacter baumannii المعزولة من عينات سريرية في محافظة بابل == Detection of Carbapenem - Resistant Genes of Acinetobacter Baumannii Isolated From Clinical Samples In Babylon Province

Author name: رعـد عبد العباس حمزة الهرموش
Supervisor name: ايمان محمد جار الله
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: للفترة من اذار 2014 الى اذار 2015 تم جمع 1300 عينة سريرية مختلفة (عينات ادرار ومسحات جروح وحروق وعينات دم ومسحات من الفم والاذن والعيون بالاضافة لعينات البراز والقشع) من اثنين من مستشفيات محافظة بابل (مستشفى الحلة التعليمي ومستشفى بابل التعليمي للنسائية و| During the period between March 2014 and March 2015, a total of 1300 clinical specimens (urine, wounds, burns, blood, throat, ear, eye, stool, and sputum) were collected from two hospitals in Babylon province; Al - Hillah Teaching Hospital, and Babylon Hospital for Maternity and Pediatric. All specimens were cultured and 10 Acinetobacter baumannii isolates were obtained from clinical specimens in a percentage of (0.76%) distributed in blood 1 (0.6%), urine 2 (1%), wound infection 1 (0.75%), burn 5 (0.85%) and throat 1 (2%). This study was conducted to determine the occurrence of carbapenem resistant A. baumannii isolates obtained from Hillah hospitals. Isolates were identified according to API20E system and further confirmed using PCR technique. Antibiotics susceptibility was assayed by using disks diffusion method according to CLSI recommendations. All isolates revealed positive results with rapid iodometric test indicting the ability of beta lactamase production. Phenotypic detection of carbapenemase production was performed using the imipenem - EDTA disk and modified Hodeg's test (MHT). Then isolates were subjected to monoplex PCR targeting blaOXA - 51, blaOXA - 23, blaOXA - 24, blaOXA - 58, blaIMP, blaSIM blaNDM - 1, blaNDM - 2 and blaVIM genes, as well as, efflux pumps genes. One of the identified isolates (10%) was found to be imipenem, meropenem and ertapenem resistant, this isolate gave positive result with the imipenem - EDTA disk and (60%) of isolates were positive to MHT. PCR experiments showed ; all isolates were harbored blaOXA - 51 gene, four (40%) isolates were harbored blaOXA - 23 gene, three (30%) isolates were harbored blaOXA - 24 gene, four (40%) isolates were harbored blaOXA - 58 gene, five (50%) isolates were harbored blaIMP gene, six (60%) isolates were harbored blaSIM gene, two (20%) isolates were harbored blaNDM - 1 gene, four (40%) isolates were harbored blaNDM - 2 gene, while none of these isolates harbored blaVIM gene. The present findings suggest that emergence of (OXA - 23, OXA - 24, OXA - 58, IMP, SIM, NDM - 1, NDM - 2) carbapenemase producing A. baumannii clinical isolates in Hillah City hospitals. Also there are indicative appearance of efflux pump genes ; (50%) for Ade - A and Ade - B each other, (40%) for Ade - C, (80%) for all of Ade - R and Ade - S, (100%) for all of Ade - I and Ade - J, and (50%) for Ade - Y. All isolates of A. baumannii appear as MDR, while only one appear to be as PDR. The trans - mobility of resistant genes was examined by trans - conjugation experiment ; the results indicated that only blaIMP and blaOXA - 23 genes were transferred horizontally in the current study. In attempting to investigate any blaNDM gene variation the results showed some different than NCBI - Blast A. baumannii blaNDM - 1 and blaNDM - 2 it may as a unique genotyping.These results revealed that carbapenemase producing A. baumannii were detected in both phenotypic and genotypic methods (PCR). This underlies the importance of their accurate identifications and reporting to prevent the emergence of complete resistance to the most potent drugs against A. baumannii in Babylon province.

دراسة جزيئية، وخلوية وراثية، ومناعية لمرض سرطان القولون والمستقيم في العراق == Molecular, Cytogenetic And Immunological Study of Colorectal Cancer In Iraqi Patients

Author name: حيدر جاسم محمد الخفاجي
Supervisor name: علي حمود السعدي | عزام قنبر اغا
General topic: Biology
Specific topic: Zoology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The study consists of three parts related with patients of CRC as in : 1 - Molecular part 2 - Cytogenetic and molecular genetics part and 3 - Immunological part. In addition of their relatives of clinical and pathological diagnosis, genus, and tumor locations in 150 of Iraqi patients confirmed with CRC collected from Teaching Hospitals of some Iraqi governorates. The percent of male to female (54.66% / 45.43%) and the aged range of study were 16 to 80 years.The first part consist a study of five types of genes related with CRC represented by MLH1, MSH2, APC, K ras, and SMAD7 genes. Some of these genes develop with germline mutations as in MLH 1 exons1 and 15 so as MSH2 genes. While the rest genes related with a sporadic of CRC. All these genes were amplified by conventional polymerase chain reaction (PCR) for study the types of the mutations and their defect of these genes on CRC. The APC exon11and K ras exon1 genes were processed by single strand conformational polymorphism (SSCP) technique. The results of PCR - SSCP technique for two genes represented by appeared three types of bands, which were (AA), (AB) and (AC) bands. The important band was (AB) which constitutes the variability region represented by 84.2% and 44.82% in patients for both genes. The results of patients with mutated bands with high significant differences(P?0.05).compared with healthy control. Patients carried these bands subjected to PCR - Sequences technique. The analysis results for APC gene sequences were substitutions mutations type of single nucleotide polymorphism (SNP) change Cytocine to Thiamin (C>T) at 1972 location of genome. While the analysis results of Kras gene appeared two types of mutations, substitution and frame shifts represented by deletion mutation and so as appeared stop codon mutation.The other genes represented by MLH1, MSH2, and SMAD detected by direct PCR - Sequences. The results analysis of MLH1 gene, exon (1and 15) represented by nucleotides change with high frequencies of substitution mutation through exon1 at different locations of nucleotides. So as frame shift mutation type deletion through exon15. While for MSH2 gene, exon 6 from 6.66% represent by deletion mutation. A spread study for SMAD7 gene, exon4 were done through 30 patients average age 52 years (male to female 56.7% : 53.3%) confirmed colorectal adenocarcinoma compared with 15 healthy. A mutation of 20% of (SNPs) were identified.The second part which represented standard conventional cytogenetic and molecular genetics were done through peripheral blood culture (PBC). The study showed increasing of mitotic index (MI) in patients with significant differences (P?0.05) compared with healthy controls indicating for increasing of proliferation of the lymphocytes division. The study showed some chromosomal aberrations with significant, the majority of aberrations were higher significant in dwarf and aneuploidy chromosomes so as elongation chromosomes revealed significant differences (P?0.05) between patients and healthy. The appeared of Polyploidy chromosomes, with significant differences (P?0.05), that’s seem to be good indicator for cancer disease. The molecular genetics alterations which dependent on cytogenetic investigation were done through deletion of long arm of 5 chromosome which APC gene is located. The test elucidates the importance of inactivation (deletion) of APC gene in elicited of colorectal cancer. The study of 20 patients, were investigated by fluorescent in situ hybridization (FISH). The results showed 60% patients which have 5q arm deletion of (+). And (5%) have two deletions (++) which was a male aged less than 60 years. The results analysis explained significant differences (p?0.01) between studied group and deletion (+) of arm 5q. A correlation represented by significant differences (p?0.01)through dysfunction of APC gene deletion of 5q were found with high percent among sporadic adenocarcinoma 58.3%, with less in attenuated familial adenomatous polyposis (AFAP) and familial adenomatous polyposis (FAP) represented by the (25%), and (16.7) respectively.The last part related with immunological test were done by detection of tumor markers represented by Carcino Embryonic Antigen (CEA), IL - 33 and IL - 31.These markers represented a confirmative indicators for colorectal adenocarcinoma which were tested by ELISA technique in (79) patients confirmed with CRC of male and female. These tumor markers in tested with patients showed high significant differences (p?0.01) compared with healthy controls. Another immunological test for detection of Human papilloma virus (HPV) type 18 E6 gene expression in CRC by Immune histochemistry technique (IHC) in 71 (FFPET) of CRC. The results of this study showed there were a correlations between patients and adenocarcinoma positive HPV18 E6 infection 43.7% of patients infected with virus, with high significant differences (p?0.01) and higher infection in female (67.7%) than male (32.3%). So as a correlations were found between HPV18 E6 expression and tumor tissue locations, explained by high percentage 45.2% in rectum.While a tumor marker was (CD8+) was used to determine its role in human immune surveillance in tumor regions of CRC so as with regions which were infected by HPV. The study revealed high significant differences between healthy control and studied groups which have (CD8+) positive infiltration in tumor origins through detection by (IHC).In conclusions diagnosis of CRC can be detected by special genes like K ras gene through professional PCR processing, compact with tumor markers, so as Fluorescent in situ hybridization (FISH) technique provides a precise method which can be used for detection of alteration of molecular and cytogenetic related with CRC.

النمو، الفعالية الانزيمية والتعبير الجيني للانزيمات المحللة للبروتين (Protease) في الفطر الجلدي Trichophyton rubrum == Growth, Enzyme Activity And Gene Expression of Proteases In A Dermatophyte Trichophyton Rubrum

Author name: سارة كريم كاظم الزبيدي
Supervisor name: جواد كاظم الجنابي | عدنان حمد الحمداني
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: صممت الدراسة الحالية لتوصيف الانماط الجزيئية والمظهرية للنمو والفعالية الانزيمية للانزيم المحلل للبروتين والتنوع الوراثي وعلاقته بالتعبير الجيني بين عزلات الفطر الجلدي.Trichophyto rubrum ولهذا الغرض جمعت 150 عينة سريرية (قشطات جلدية (80), اجزاء شعر (60) | The present study was designed to characterize the morphological and the molecular patterns of growth, enzymic activity of proteases, genetic diversity and their correlation with gene expression among strains of Trichophyton rubrum. For these purpose, A total of 150 clinical specimens (skin scrapings (80), hair fragments (60) and nail clippings (10)) were collected from 100 patients (70 males&80 females) whom clinically diagnosed with dermatophytosis after attendingto the dermatology and venereal diseases centre of Mergan Teaching hospital and private clinic in Babylon city from Feb. 2014 to May 2014. T. rubrum were isolated and identified using cultural, biochemical and physiological tests. Isolates were then subjected for confirmation by PCR, genotyping using RFLP - PCR, sequencing and registration of these sequences in GeneBank for obtaining accession numbers then phylogeny. The growth conditions, were tested, in addition to, the genetic expression of proteases (exocellular protease and endocellular aminopeptidase) were determined using Real - Time PCR. Out of 150 specimens, 24 (16%) isolates were dermatophytic fungi and only 5 (20.8%) of them belong to T. rubrum. The influence of cultural conditions in growth of T. rubrum showed that the 30 ?C, pH 6, SDA medium and 7 days incubation were the optimal conditions for its growth. Proteolytic activity of isolates of T. rubrum against casein as a substrate revealed an ability to produce protease in solid and liquid media after 14 days of incubation. This activity was varies according to the type of isolate where the isolate No.1 (isolated from skin) gave a high proteolytic activity (5.6cm) in solid media and (80.1U/ml) in liquid media in comparison with other tested isolates (No.2 - No.8). on the other hands, the 9 days of incubation, 30 ?C, pH 7 and 0.5% substrate concentration were the optimal condition for proteolytic activity of these isolates. The molecular tests confirmed that all tested isolates belong to T. rubrum with amplicon size (601bp) after amplification of ITS1 primers using PCR technique. While the RFLP - PCR technique showed the presence of two genotypes (I%II) belong to T. rubrum with subgenotypes (Ia - Id) and (IIa - IId) respectively. The relative quantification of proteolytic activity (exocellular protease and endocellular aminopeptidase) produced by T. rubrum genotypes were expressed by using Real - Time PCR after amplification of the target gene of ptotease and aminopeptidase in comparison with housekeeping gene (? - actin) as a reference gene. The results showed the up - regulation of gene encoded to exocellular protease than the down - regulation of endocellular aminopeptidase produced by T. rubrum in the presence of casein as a substrate. The internal transcribed spacer 1, partial sequence, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence and 28S ribosomal RNA gene, partial sequence of local isolates of T. rubrum were used for sequencing, registration in Genebank - NCBI and phylogeny. Five accession numbers were recorded and available to NCBI, EMBL in Europe and the DNA Bank of Japan. These accession numbers were : KP979787, KP979788, KP979789, KP979790, KP979791. Phylogenetic relation between local strains and world strain showed a high identicasl with T. rubrum (GQ376105.1). This is the first study in Iraq which employed sequencing, registration of sequences in Genebank - NCBI and carrying out phylogeny of local and world strains of T. rubrum.

الكشف عن بكتريا الكوكسيلا بيرنتي في حالات الاجهاض في الانسان والمجترات الصغيرة في محافظة ذي قار == Detection The Role of Coxiella Burnetii In Abortion of Human And Small Ruminants In The Thi - Qar Province

Author name: عباس دخيل مطر جبر الجوراني
Supervisor name: عبد الله كاظم هندي | محمد عبد الله جبر
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: الحمى المجهولة من الامراض الواسعة الانتشار في العالم تحدث بسبب جرثومة الكوكسيلا بيرنتي.هذه الجرثومة تسبب عدة امراض الاجهاض هو الاكثر حدوثا. المخاطر البيولوجية وانشار هذه البكتريا على النساء المجهضة والحيوانات في العراق غير معروفة. لذلك هدفت هذه الدراسة ال | Query fever is a worldwide distributed disease caused by Coxiella burnetii bacteria causes several disease main of this disease is abortion, the biological hazard and prevalence of this bacterium on the aborted woman and small ruminants are not known in Iraq. Therefore this study was aimed to detection and isolation of Coxiella burnetii as a causative agent of abortion in woman and female of small ruminants.352 samples were collected includes human samples and animals samples. A total of 120 blood aborted women, 7 breast milk samples, 20 placental samples and 50 blood samples from normal women as control groups, these samples collected from Bent Al - Huda hospital in Thi - Qar province. Animals samples, a total of 80 aborted animal blood samples, 15 milk samples, 10 placental samples and 50 blood samples, these samples from normal animals as controls group, these samples collected from veterinary hospital in Thi - Qar province. The results of this study showed a high incidence of abortion occurs in first trimester of gestation (41.666%) and high incidence in rural regions (64.16%) and also age group from 21 to 30 years old (50%).The methods used for detection of Coxiella burnetii includes serology tests, polymerase chain reaction (PCR) technique for confirmation serological test and isolation on embryonated chicken eggs and detection by PCR technique. Out of the 120 women serum samples analyzed by enzyme ELISA, the results of percentage of anti - Coxiella burnetii IgM and IgG in human samples were 36 (30 %). The percentage of anti - C. coxiella IgM in human samples were 10 (8.333%), while the percentage of anti - C. Coxiella burnetii IgG in human 26(%21.667%).. In animals total of (80) serum samples, the percentage of anti - C. coxiella IgM and IgG in animals' serum samples were 31(38.75%) The percentage of anti - Coxiella burnetii IgM in animals 10 (12.5%), while, the percentage of anti - C. coxiella IgG in animals are 21(26.25 %). PCR technique used for identification of Coxiella burnetii in human and animals samples by targeting three genes including outer membrane protein (com1 and com2), 16S rRNA and transposase insertion element (IS1111) genes. In human blood samples the com1 and com2 genes detected in 23of 120 (19.166%) samples and in breast milk samples 1 of 7 (14.28%). and not detected in placental samples. The 16S rRNA gene was detected in 16 of 120 blood samples (13.33%) and in breast milk samples and placental samples were not detected. The IS1111 gene was detected in 9 of 120 blood samples (7.5%) in human blood samples, also were not detected in milk and placental samples.. In animals blood samples the com1 and com2 genes were detected in 19 of 80 blood samples (23.75%) and were not detected in milk and placental samples. The 16S rRNA gene detected in the same percentage of com1 and com2 genes 19 of 80(23.75%) and in the milk samples and placental samples not detected. The IS1111 gene detected in 10 of 80 (12.5%) in animal blood samples, also were not detected in placental samples. An isolation of Coxiella burnetii which identified by ELISA and PCR via inoculated Coxiella burnetii buffy coat samples in embryonated chicken eggs from 6 to7 days old and then completed an incubated to 10 - 15 days, harvested yolk sac contains then detecting Coxiella burnetii by PCR. The results of PCR after inoculation of (43) samples were positive in PCR (100%). Statistical analysis revealed no significant different between ELISA test, PCR and isolation results in human and animals samples. These mean that we can use the ELISA in the primary diagnosis. The correlation coefficient was highly significantly between human and animal samples at 0.01%.

تقييم دور الحمض النووي الريبوزي الدقيق في بعض المعايير الجينية والفسلجية لدى مرضى السكري من النوع الثاني == Evaluation Of Micrornas Role In Genetics And Physiological Parameters In Type 2 Diabetic Patients

Author name: اسراء حرجان محسن
Supervisor name: حيدر كامل زيدان | علي حمود السعدي
General topic: Biology
Specific topic: Zoology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

فعالية الطبقة السطحية كممنع ومساعد مناعي والمستخلصة من بكتريا Aeromonas hydrophila المعزولة من مرضى الاسهال في محافظة بابل == Immunogenic And Immunoadjuvant Activities For Surface Layer Extracted From Aeromonas Hydrophila Isolated From Patients With Diarrhea In Babylon Province

Author name: لبنى عادل جميل النوري
Supervisor name: فريال جميل عبد | وجدان رضا تاج الدين
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

ذكور الجرذان المستحث فيها السكري بمادة الالوكسان التاثير الخافض للسكر لمستخلص اوراق نبات الديباج على == Hypoglycemic Effect Of Calotropis Procera Leaves Extract On Alloxan Induced Diabetes Male Rats

Author name: شيماء عبد الجاسم عبد زيد الشكري
Supervisor name: علي حمود السعدي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Babylon
First pages:

الاستهداف الجزيئي لفايروس جون كنينكهام P16 Proteins ،B CellLymphoma Proteins لمرى ورم القولون == Molecular Targeting Of John Cunningham Virus (JCV),P16 Proteins And Bcl -2 Proteins In Colorectal Tumors Tissues

Author name: زهراء علي عبد الله
Supervisor name: شاكر حماد محمد العلواني
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
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