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التحري الجزيئي لبكتيريا Proteus Mirabilis المعزولة من اصابات المسالك البولية باستخدام تقنية تفاعل المتعدد السلسلة

اسم المؤلف: منذر عدنان خلف الخرساني
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
الجامعة: جامعة بغداد
مكان الجامعة: بغداد
الكلمات الدلالية:
  • بكتيريا عضوية سالبة الجرام

Detetion Of Vancomy Cin Resistance Among Methicillin Resistant Staphylococcus Aureus And Their Effect On Autolysis

اسم المؤلف: Al - Azzawi . Hawraa Ali Mahmood Khalaf
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
الجامعة: جامعة بغداد
مكان الجامعة: بغداد
الكلمات الدلالية:
  • Staphylococcus

دراسة بكتيريولوجية ومناعية لبكتريا Aeromonas hydrophila في مدينة السماوه == Bacteriological and Immunological Study of Aeromonas hydrophila in Al - Samawa City

اسم المؤلف: نسيم قاسم ناجي
اسم المشرف: ازهار عمران الذهب
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: المثنى
الصفحات الاولى:

التوصيف الجزيئي لذيفاني Panton Valentine leukocidine وExfoliatine في العزلات المحلية لبكتريا المكورات العنقودية المقاومة للمثسيللين == Molecular characterization of Panton Valentine leukocidine and Exfoliatine toxins in local isolates of Methicillin resistant Staphylococcus aureus

اسم المؤلف: رغد عبد اللطيف عبد الرزاق العبيدي
اسم المشرف: سوسن حسن عثمان كورجي | محمد فرج المرجاني
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: دكتوراه
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: تم الحصول على 100 عزله تعود لبكتريا Staphylococcus aureus المقاومة للمثيسيللين من المرضى المصابين بالاصابات الجلديه المختلفة (52 عزله من الجروح)و(32 عزله من الخراج )و(16 عزله من الحروق) والوافدين الى مستشفيات ابن البلدي ومستشفى حماية الاطفال والجراحات التخصصيه ومستشفى الشهيد غازي الحريري ومستشفى بغداد التعليمي والمختبرات التعليميه في بغداد للفتره من ايلول ولغايه كانون الاول 2013. اختبرت حساسية جميع العزلات تجاه 13 مضادا حيويا مختلفا وقد اظهرت العزلات جميعها مقاومة لمضاد Cloxacillin بنسبة (100%) ، يليها المقاومة لمضاد Cefoxitin (86%) ومضاد Cephalexine ( 51% ) ، فيما كانت اقل نسبة مقاومة تجاه مضاد Teicoplanin ( %4). تم الكشف عن امتلاك العزلات لجينات pvl وeta وetb المشفرة لذيفانات Panton Valentine leukocidin وExfoliatin باستعمال تقنيه تضاعف البلمره المتسلسله PCR)) ، اظهرت النتائج امتلاك 27 عزله (27%) لجين pvl وامتلاك 13 عزلة (13%) لجين eta فيما لم تظهر اي عزلة امتلاكها لجين.etb 16 عزله منتجه لجين pvl وعزلتان منتجه لجين eta ارسلت الى NICEM/USA - machine is ABI3730XLAppliedBIOSYSTEM لتحديد تعاقب القواعد النتروجينيه لجين pvl وeta في عزلات بكتريا S. aureus وبعد تحليل النتائج وجد ان نسبة (58.44%) من الطفرات في الجين pvl الشريط R هي طفرات استبدال و(.66%37( طفرات حذف و.89%)3(طفرات ادخال بينما كان .21%)34( من الطفرات في الجين pvl الشريط F هي استبدال و.89%)57(طفرات حذف و(.89%7(طفرات ادخال. وفيما يخص الجين eta فكانت )100%) من الطفرات هي طفرات حذف لكل من eta - R وeta - F.. انتخبت العزله رقم ( 84 ) لاستخلاص وتنقيه ذيفان PVL ،وقد انتج الذيفان بعد مرور 24 ساعه من الزرع، رسب بعدها الذيفان باستعمال كبريتات الامونيوم (حد الاشباع 80%) ومن ثم التنقيه باستخدام عمود المبادل الايوني DEAE - cellulose بعدها عمود كروموتوغرافي الترشيح Sepharose 6B ومن ثم عمود كروماتوكرافي hydroxyl apatite الكاره للماء . قدر تركيز البروتين عند كل خطوه من خطوات التنقية وقد بلغ التركيزعند اخر خطوه من التنقيه.43 22 مايكروغرام /مل ،وصف الذيفانPVL وحدد الوزن الجزيئي له بواسطة هلام الترشيح sepharose 6B وباستخدام منحنى قياسي لعلاقة لوغارتم الوزن الجزيئي وخاصية Ve/Vo وبوجود محاليل البروتينات القياسيه، اذ حدد الوزن الجزيئي للذيفان فكان 35448دالتون . لوحظ النشاط السمي للذيفانPVL ضد كريات الدم البيضاء متعددة النوى بظهور الثقوب في هذه الخلايا وبعد فترات حضن مختلفه مع الذيفان عند تركيز 10 مايكروغرام /مل اذ ادى ازدياد التركيز الى تحطم الكريات متعددة النوى مما يشير الى موت الخلايا وتنخرها اعتمادا على تركيز الذيفان. حدد التاثير السمي الخلوي للذيفانPVL بتحديد الجرعة القاتله النصفيه 50% من الحيوانات المختبريه اذ ظهرت النتائج ان نسبة موت الفئران (50%)حدثت بعد مرور 24 ساعة وعند تركيز 10 مايكروغرام /مل .اظهرت الفحوصات النسجيه قدرة ذيفانPVLعلى احداث الاصابه في بعض اعضاء الفئران المصابه تجريبيا عندما حقنت الفئران البالغه في الصفاق بتراكيز الذيفان (5،10،15،20،22.43) مايكروغرام /مل .اخذت الاعضاء وعملت المقاطع النسجيه بعد ساعتين ثم بعد 24 ساعة وكذلك قتلت مجموعه من الفئران بعد 24 ساعه من التجريع الانفي بالذيفانPVL لتفحص بعدها الاعضاء نسيجيا.اثبتت نتيجه الفحص النسيجي للاعضاء ظهور تنخربانسجة الرئه وارتشاح الخلاياالالتهابيه وتنخرانسجه الكبد وتضخم بانسجة الطحال | One hundred isolates of Methicillin resistant Staphylococcus aureus were obtained from patients suffering from a variety of skin infections (52 isolates from wound ) , ( 32 isolates from abscess) and (16 isolates from burn), from patients at hospitals of Baghdad governorate included Ibn - El Balady, Martyr gazi Alhariry for specialized surgery hospital, Welfare teaching hospital, department of teaching laboratories and Baghdad teaching hospital at a period between September until November 2013 and were identified by morphological and biochemical tests , all of them were tested for their susceptibility to 13 of antibacterial agents, and all isolates were resistant to cloxacillin(100%) ,followed by cefoxitin (86%) and cephalexin (51 %), 26% to lincomycin, 24% to Azithromycine ,23% to trimethoprim and 22% to rifampicin,18% to gentamycin, 17% to vancomycin, ,13% to clindamycin and levofloxacine while the minimum resistance were seen with teicoplanin (4%).All isolates were detected for pvl,eta and etb by amplification of genes by PCR technique ,results showed that from 100 isolates ( 27%)Carry pvl gene,(13%) carry etA gene, while etB gene did not appear in any isolate.Polymerase chain reaction Product of pvl gene for sixteen isolates of S.aureus and two isolates of eta gene were sent to NICEM/USA - machine is ABI3730XLAppliedBIOSYSTEM to determine nucleotides sequencing and were achieved by using the applied biosystem (ABI) Capillary system, that mutation on pvl - R (58.44%) was subsititution mutation , (37.66%) was deletion and(3.89%) was insertion ,pvl - F (34.21%) was subsititution,( 57.89%) was deletion and(7.89%) insertion, on eta (100%) was deletion . One of pvl positive isolate (No.84) was selected for extraction and purification of Panton valentine leukocidin ,this toxin was produced after 24 hr of inoculation and it increased during the beginning of stationary phase .Panton valentine leukocidin toxin was precipitated by ammonium sulphate (80% saturation ) and purified using ion exchang byEDAE - cellulose, gel filtration chromatography by sepharose 6B, and hydro phobic interaction chromatography by hydroxyapatite. Protein concentration in each step of purification was determined ,protein concentration in the last step of purification was22.43µg/ml . PVL characterized , Mwt was determined by gel filtration sepharose 6B .The standard curve that represent the relationship between Log M.Wt and Ve/Vo for standard protein.The molecular weight of PVL toxin was determined as 35448 Da. The leukotoxic activities of PVL toxin was down by pore forming occurrence on PMNs after incubation with 10 µg/ml concentration PVL with in different incubation period ,when increase concentration lead toPMNs rupture Thus, the modes of cell death in vivo (necrosis versus apoptosis) may critically depend on the PVL concentration.Cytotoxicity of PVL was detected when determined the dose which cause death of 50% of laboratory animals. The result showed the death percentage of mice after 24hr were 10µg/ml.Histopathological investigations proved the ability of PVL toxin to cause the infections in the most organs of infected experimentally mice. Adult mice were injected intraperitonially with PVL at a different concentration (22.4, 20,10,5) g/ml. Histological sectioning of the organs was done after 2hr,24hr.also living mices were killed after 24hrs after endotracheal instillation with 20 g/ml PVL toxin.Histological examination were done for organs (liver, spleen and lung) .Results showed the existence of lesions and necrosis Damage and necrosis of aleveolar tissue ,odema, emphysematous chang chronic inflammatory cell infiltration and destruction in lung with degeneration and necrosis hepatic cell and spleen enlargement of white pulp with mild necrosis of parenchymal tissue

انتاج وتنقية اللكتين من بكتريا Acinetobacter baumannii المعزولة من القشع وتاثيره في بعض الاحياء المجهرية خارج الجسم الحي

اسم المؤلف: رونق مهدي هاشم
اسم المشرف: ساهرة نصيف مسلم
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: In order to isolate Acinetobacter baumannii , 104 samples of sputum were collected from patients infected with respiratory tract infections, from Teaching Baghdad Hospital / Medical City, General Teaching Al - Kindi hospital and Al - Imam Ali Hospital . Depending on microscopic , cultural and biochemical tests ,23 isolates belonge to it were obtained.The ability of A.baumannii isolates to produce lectin was detected by using glass slide and microtiteration plates methods and the results showed that all the isolates were able to produce lectin , A.baumannii S12 was the best isolate for produce it and the blood group O was the best for detection the titration of agglutination activity.The optimum conditions for lectin production were determined and the results showed that the cultivation of A.baumannii S12 in Colonization Factor Antigen medium with pH value of 7.2 at 37 ºC for 24 hours in shaker incubator at 100 rpm / min. were the best to produce it. The lectin was extracted from cilia of A.baumannii S12 isolate by using six different breaking methods at different times , the glass beads method for 50 minutes was the best to extract it, the agglutination activity reached to 512 AU / ml with specific activity 174.14 AU / mg protein in comparison with other breaking methods. Lectin was purified by three steps, included ; precipitation by 35% saturation ammonium sulfate , ion exchange chromatography by DEAE - cellulose, then gel filtration chromatography by Sephadex G - 150. The final lectin recovery was 36.92% with 20.63 folds of purification and 3592 U / mg protein of specific activity .The purified lectin was also partially characterized and the results showed that the optimal activity of the lectin was at 30 ºC and its thermostability was between (10 and 30) ºC ,the optimum pH for lectin activity was 7.2 while the pH value for its stability was between 7 and 7.2 . Lectin retained whole activity when treated with sucrose, raffinose, maltose, mannitol, fructose, lactose, arabinose, ribose and rhamminose, while it lost whole activity when treated with glucose , mannose and galactose. Also, lectin retained whole activity when treated with EDTA - NaN3 and trypsin , whereas its agglutination activity was reduced to the half when treated with pepsin , and to 12.5% and 0.39% when treated with 2 - mercaptoethanol and formalin, respectively. In addition, the effect of some substances on lectin stability was studied and the results showed that the mixture of 2% glycerol and physiological normal saline followed by 20% ammonium sulfate were the best for its stability for 20 and 10 days, respectively. while the solutions of the rest materials(Tween - 80, mannitol, sucrose, lactose and SDS) showed inhibitory effect on lectin activity.Also, the antimicrobial activity of purified lectin against 12 bacterial and fungal isolates was studied and the results showed that the lectin had antibacterial activity against Klebsiella pneumonia , Pseudomonas aeruginosa and Proteus mirabilis with (50 , 38.88 and 36.84 )% of inhibition, respectively, and antifungal activity against Penicillium spp. , Cladosporium spp. and Fusarium spp. with (33 , 18.75 and 17.39 )% of inhibition, respectively. whereas ,it had no antimicrobial activity against the bacteria; Escherichia coli , Enterobacter cloacae ,and Staphylococcus aureus ,and the fungi ; Aspergilus niger, Aspergilus terius , and Candida albicans.

دراسة بكتريولوجية وجزيئية للجين norA في بكتريا Staphylococcus species المقاومة للمثيسيلين == Bacteriological and molecular study of norA gene in Methicillin Resistant Staphylococcus species bacteria

اسم المؤلف: احلام خليفة عبد الله التميمي
اسم المشرف: محمد فرج شذر المرجاني
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: One hundred clinical isolates of methecillin resistant Staphylococcus spp. were collected from different sources including : (80,10,5,3,2) isolates from wounds, blood, urine, pus, otitis media respectively from different hospitals in Baghdad during the period from 1/9/2013to 1/1/2014. All isolates were identified through morphological, cultural and some biochemical testes. Coagulase test was performed done by using both tube and slide method The results showed that 75% of isolated were positive for this test which refer to Staphylococcus aureus, and 25% were Coagulase negative Staphylococci (CoNS) .The antibiotic susceptibility test against 10 antimicrobials were determined by the agar diffusion method ; Results showed that all isolates were resistant to ceftriaxone, cloxacillin and aztreonam. The most effective antibiotic aganist isolates were ciprofloxacin and norfloxacin. The Minimum inhibitory concentrations (MICs) for ciprofloxacin and norfloxacin were determined by agar dilution method .The MIC isolates ranged from 4 to 1024 μg/ml for both antibiotics. On the other hand the minimum inhibitory concentrations (MICs) were determined for quartenary ammonium compounds and chloroxylenole . Results revealed that MIC for chloroxylenole were 50 - 500μg/ml and 500μg/ml for quartenary ammonium compounds.Thirty Four of methicillin resistant isolates were choosen for detect efflux pumps by using Ethidium Bromide - Agar Cartweel Methode (EtBrCW), which include ethidium bromide dye as marker to detect efflux pumps, the result showed that 18 isolates(52.9%) give positive result, 3 isolates (8.82%) were intermediate, wherase remaining isolates 13 isolates(38.29%) were give negative result.Polymerase Chain Reaction (PCR) technique was performed done using specific primer targeting the specific sequences of the norA gene, The results showed that norA found in 16 isolates (47%). Nucleotide sequence for norA gene in 9 isolates were determined ,results revealed consistency reaching up to 90 % as compared nitrogen bases sequence of the norA gene present in the Staphylococcus aureus strain in NCBI Detection of gene expression was performed done by using q RT - PCR technique after RNA extraction and cDNA syenthesis , the result showed that gene expression were various among isolates , and the gene expression increase with increasing MIC of ciprofloxacin and norfloxacin.The effect of biosurfactant as efflux inhibitors was tested by detection of MIC for ciprofloxacin alone and mixed with biosurfactant , the result showed ability of biosurfactant in decreasing the MIC to two or four - fold in the presence of inhibitor this refer to biosurfactant effective material against NorA efflux pump.

تثبيـط نمو وتكوين الغشاء الحيوي لبكتريا Pseudomonas aeruginosa بالبروتينات المنتجة من خـمـيرة cerevisiae Saccharomyces == Inhibition of Pseudomonas aeruginosa Biofilm formation and Growth by inhibitory Proteins Produced by Saccharomyces cerevisiae

اسم المؤلف: احسان علي رحيم السوداني
اسم المشرف: نبراس نزار محمود
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: جمعت 207عينة سريرية من بعض مستشفيات بغداد ولفئات عمرية مختلفة ولكلا الجنسين للفترة من 15/10/2013 - 15/1/2014 وعزلتﹸ وشخصتﹸ 68 عزلة من بكتريا Pseudomonas aeruginosa ومن مصادر مختلفة شملت (28) عينة من الحروق و(21) من اخماج الجروح و(6) اخماج المسالك البولية و(6) من اخماج الاذن الوسطى و(4) من التهاب البلعوم و(3) من القشع. شخصتﹸ العزلات البكتيرية اعتمادا على صفات المستعمرات المظهرية والمجهرية عند تنميتها في الاوساط الزرعية التفريقية والاختيارية فضلا عن الفحوصات الكيموحيوية ولتاكيد نتائج الفحوصات الكيموحيوية استعمل نظام Vitek2 compact كخطوة تكميلية . استعملت في هذه الدراسة طريقتين للتحري عن تكوين الغشاء الحيوي وهي طريقة Congo Red Agar Method(CRA) وطريقة اطباق المعايرة الدقيقة Microtitration plates method (MTP).اظهرت النتائج ان طريقة (MTP) كانت الاكثر دقة في التحري عن تكوين الغشاء الحيوي , اذ لوحظ ان (28)عزلة من اصل (68) عزلة كانت مكونة للغشاء الحيوي , في حين كانت (40) عزلة غير مكونة للغشاء الحيوي قياسا بطريقة (CRA) التي كانت عدد العزلات المكونة للغشاء الحيوي فيها (16) عزلة و(52 ) عزلة غير مكونة للغشاء الحيوي .اخضعت العزلات المكونة للغشاء الحيوي لفحص الحساسية تجاه (17) مضادا حيويا بطريقة الاقراص , وقد تبين ان عزلات الدراسة تحمل صفة المقاومة المتعددة للمضادات (Multi drug resistance) اذ اظهرت جميع العزلات السريرية لبكتريا P.aeruginosa مقاومة بنسبة 100% للمضادات Piperacillin , Amoxicillin/Clavulanic acid , Ticarcillin/Clavulanic acid, Ceftazidime, Ceftriaxone , Aztreonam, Cefoxitin , Çefodizime, Trimethoprim/Sulphamethoxazole , Nalidixic Acid , Rifampicin , ثـم تـدرجت مــقاومة البكــتريا لـبقية المــضادات ,فــي حيـــن كانـــت حساسة لمضاد Imipenem بنسبة 100%. قدر التركيز المثبط الادنى (MIC) لعزلات بكتريا P. aeruginosa باستعمال نظام compact Vitek2 وحددت النتائج بوصف البكتريا مقاومة R او حساسة S.استعملت خمائر الخبز الجافة المستوردة من مناشئ مختلفة والمتوفرة في الاسواق المحلية من اجل الحصول على عزلات لخميرة Saccharomyces cerevisiae التي شملت كل من العزلة AY من خميرة Angel الصينية المنشا والعزلة MY من خميرة Magestic الصينية المنشا والعزلة PY من خميرة Packmaya التركية المنشا والعزلة LY من خميرة Altunsa التركية المنشا، وتم التاكد من جنس الخميرة ونوعها باعتماد المفاتيح التشخيصية التي تشمل كل من الصفات المظهرية والزرعية والفحوصات الكيموحيوية.اجريت غربلة لرواشح عزلات الخميرة من اجل انتخاب العزلة الاكفا في انتاج المواد البروتينية المثبطة باستعمال طريقة الانتشار في الحـفر لمعــرفة تاثير هــذه المواد تجاه بكتريا P. aeruginosa المنتــجة للــغشاء الحــيوي قيد الدراسة , لم تظهر الرواشح الخام (غير المركزة) لعزلات خميرة S. cerevisiae اي تاثير تثبيطي ضد العزلات البكتيرية , في حين ادى تركيز راشح خميرة AY S. cerevisiae لمرة واحدة ولمرتين الى اظهار فعاليتها التثبيطية تجاه عزلات بكتريا P. aeruginosa المنــتــجة للغشاء الحيوي وبمعدل اقطار تثبيط بلغ (15.5, 20.4) ملم عـلـى الـتـوالـي . فـي حـين بــلــغ مــعــدل اقـــطارمــنطـــقــة الــتثــبيط لراشح خميرة PY S. cerevisiaeالمركز لمرة واحدة ولمرتين (13.8, 18.2) ملم على التوالي.اظهرالراشح المركز لعزلة AY S.cerevisiae المنماة في وسط Yeast Extract Glucose Peptone Broth (YEGPB) تاثيرا تثبيطيا واضحا تجاه العزلات قياسا براشح العزلة المنماة في وسط (PDB) Potato dextrose broth . عـدت مدة الحضن (24) ساعة افضل مدة زمنية تحتاجها الخميرة لتحفيز انتاج المواد المثبطة.شـملت خــطوة تنــقية البروتينات المثبطة استعمال كبريتات الامونيوم بنسبة اشباع تراوحـت بــين 30 الــى 70% لتــرســيب الــبروتينات الــموجــودة فـــي وسط النمو للعزلة AY S. cerevisiae , وكان للبروتين المثبط المنقى جزئيا فعلا مضادا لنمو البكتريا . اذ بلغ التركيز المثبط الادنى للبروتين المثبط المنقى جزئيا (64) ملغرام/ملليلتر, ما عدا عزلة واحدة بلغت قيمة (MIC) لها (32) ملغرام/ملليلتر. وتباينت فعالية البروتين المثبط والمنقى جزئيا المضادة لتكوين الغشاء الحيوي على عزلات بكتريا P. aeruginosa , كانت العزلة الاكثر تحسسا للبروتين المنقى جزئيا العزلة Ps33 والاقل تحسسا لها Ps68.

التحري عن عوامل الضراوة لبكتيريا اشيريشيا القولون المعزولة من المرضى المصابين بالتهاب المجاري البولية وقياس نمط بعض الحركيات الخلوية لديهم == Detection of Virulence Factors of Escherichia Coli Bacteria Which Isolated From Patient With Urinary Tract Infection And Measuring Some Cytokines In Them

اسم المؤلف: رواء ماجد محمد البو صالح
اسم المشرف: ميثم غالي يوسف
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: القادسية
الصفحات الاولى:
المستخلص: تضمنت هذه الدراسة جمع 100 عينة من اعمار مختلفة للمرضى المصابين بالتهاب المجاري البولية الذين راجعوا مستشفى الديوانية التعليمي ومستشفى الولادة والاطفال في مدينة الديوانية , خلال المدة من تشرين الثاني 2012 الى نيسان 2013 للتحري عن بكتيريا Escherichia coli ا | groups of patient with pyelonephritis, whose visited Al - Dewaniya teaching and Woman s and children hospital in Al - Dewaniya city during the period from November 2012 to April 2013 for detection the isolates of Escherichia coli. The results showed that 56% of bacterial isolates were E.coli and 44% isolates belonged to others bacterial types. These results indicated that the females were more infected 67.86%(38\56) with pyelonephritis than the males 32.41(18\56). Always our result were pointed that the age of 30 - 39 old years have beeninfected with pyelonephritis and present the high percentage infection 30.36% comparison with others age groups (1 - 9, 10 - 19, 20 - 29, 30 - 39, 40 - 49, 50 - 59, 60 - 69, 70 - 79) , with percentage of (1.79%, 7.14%, 14.29%, 30.36%, 19.64%, 10.71%, 12.50%, 3.57%) respectively. The resistance of E.coli isolates to the four generation of Cephalosporin antibiotics were showed the following state : - The first generation of Cephalosporin antibiotic were indicated to Cephalothin 76.6%, Cefazolin 71.4%, Cephlexin 69.7% and Cephadroxil 66.1%. - The second generation of Cephalosporin antibiotic were indicated to Cefaclor 59.0%, Cefonicid 60.8%, Cefprozil 50.0%, Cefoxitin 64.2% and Cefmetazole 55.3%. - The third generation of Cephalosporin antibiotic were indicated to Ceftriaxone 32.2%, Cefotaxim 35.7%, Ceftazidim 37.5%, Cefixim 42.9%, Cefdinir 35.7% and Ceftizoxim 30.4%. - The fourth generation of Cephalosporin antibiotic were consisting of one antibiotic only like Cefepime with percentage of 39.3% The results concerned the virulence factors genes showed that the gene irp2 witch responsible for taking the iron from the blood, whereas the gene pap responsible for the production of P - type Pilli, afa gene responsible for the production fimbriae, iha gene responsible for production of capsule and the gene tst responsible for toxic shock. The result of PCR for the E.coli DNA showed that all the thirty isolates of this bacteria contain the gene irp2, while the others genes pap, afa, hly, and iha were presented the following percentage 36.6%, 30.0%, 96.6% and 10.0%respectively, whereas the gene tst didn’t recorded any isolates concerting. So in this study was to measure immune factors related to the urinary tract infection is in general and pyelonephritis in specially, has been measure some of cytokines which (Interleukin - 8, Interleukin - 6, Tumor necrosis factor - ?), they found increase in these factors in sera of patients with pyelonephritis compared to healthy persons.

دراسة مقارنة لعزلات بكتريا Staphylococcus aureus المعزولة من مياه النهر ومن حالات سريرية == A Comparative Study of Staphylosossus Aureus Bacteria Isolated From River Water And From Clinical Cases

اسم المؤلف: بنين مدلول امانة الزيادي
اسم المشرف: علي عبد رحيم الناشي
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: دبلوم عالي
اللغة: العربية
مكان الجامعة: القادسية
الصفحات الاولى:
المستخلص: شملت الدراسة جمع 120 عينة اخذت من مصدرين مختلفين, 60 عينة منها جمعت من بيئة مائية هي نهر الديوانية, بينما كانت 60 عينة سريرية جمعت من الاشخاص الراقدين والمراجعين لمستشفى الديوانية ومن الاصابات الجلدية المختلفة التي شملت الدمامل, الحصف, التقشر الجلدي, الخر | The study included assemble 120 samples which had been taken from two different sources, 60 samples collected from An aqueous environment which is Al diwaniya river, where the rest 60 samples have been collected from those people who were admitted to the Al diwaniya hospital and from of different ages from male and female. Where the environment examples collected from different places of riverbed Al diwaniya. The duration of collection samples has lasted for 3 months, started One handrad isolated had been diagnosed that proved its belong to a bacteria Staphylococcus aureus, 50 isolated where taken from environment isolate and the other 50 taken from clinical isolate depending on the diagnostic methods which included tests of farm, microscopic and biochemical, It was also confirm the diagnosis of bacterial using accurate diagnosis that uses device VITEK System tested sensitivity of bacteria isolate of S. aureus, against 12 selected antibiotic, environment and clinical cases has shown resistance and sensitivity of different varied by source isolate, the nature of the antibiotic and the resistance and sensitivity have been determined by measuring diameters of areas inhibition around tablets of antibiotics it used.All the clinical isolates showed a complete resistance for the antibiotic Lincomycin with 100% percentage, where it's resisted Pnicillin G with 92%, Nalidixic acid with 42%, while the highest resistance of environment isolates was 97% for Lincomycin. The clinical isolates showed a sensitively against the two antibiotics which are Cefamandol and Cephalothin, where their percentages reached 98% and 89%, respectively. Where the percentage of environment isolates reached for the same antibiotics 100% and 97% respectively. In general, the clinical isolates were more resisted for the antibiotics than environment isolates in overall rate.differed values of minimum inhibitory concentrationsmic MIC and the minimum bactericidal concentration MBC among each other with variation of clinical isolates from side and differed with environment isolates from another side while the values differed with environment and clinical isolates from third side, where the highest value reached of MIC against Polymyxin B is (20 - 120) and (100 - 240) mg/ml for environment and clinical isolates respectively, while the highest value of MIC that also was against Polymyxin B reached (40 - 140) and (130 - 250) mg/ml for environment and clinical isolates respectively. Where the value of MIC against Cephalothin reached (0.01 - 0.6) and (0.8 - 2.0) mg/ml for environment and clinical isolates respectively. Finally, the highest value of MBC also was against Cephalothin reached (0.08 - 0.9) and (0.9 - 3.0) mg/ml respectively. In general, the bactericidal and inhibitory concentrations of the clinical isolates are higher concentrations from those bactericidal and inhibitory concentrations for environment isolates.I studied the virulence factors that come from strains of S. aureus bacteria environment and clinical which included Capsula, enzymes of Coagulase that are associated and free, , Lipase, Hyaloronidase and B - Lactamase in addition to Haemolysin clinical isolates and Leucocidin and all the environment isolates are the highest percenage in the ability to form and possess virulence factors compared with environment isolates, where the highest percentage to produce virulence factors is belongs to the Haemolysin which reached 94% percentage in the clinical isolates where in the environment isolates reached 64% percentage followed by Leucocidin that reached 84% percentage in the clinical samples and 40% percentage in the In environmental samples.Also the percentage of blood Coagulation enzyme the associated and free is the highest percentage in the clinical isolates which reached percentage 42% and 38% for the associated and free respectively, where the percentage in environment reached 20% and 36% respectively and the virulence factors was the least presence in the environmental and clinical isolates is the portfolio that reached percentage of presence 22% and 12% respectively.

العلاقة بين انتاج الانزيم المحلل للكولاجين وتكوين الغشاء الحياتي بوساطة بكتريا Pseudomonas aeruginosae == The Relationship Between Collagenase Production And Biofilm Formation By Pseudomonas Aeuroginosa

اسم المؤلف: امال عزيز كريم السعدي
اسم المشرف: شذى سلمان الطحان
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: دكتوراه
الجامعة: جامعة بغداد
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: A total of 359 samples divided as 228 clinical and 131 non clinical specimens were collected during 2012 from four hospitals in Baghdad city including : Al - Kadhymia Teaching hospital, Baghdad Teaching hospital, The Burn Specialist Hospital and Al - Imam Ali hospital, for isolation of P.aeruginosa to study the correlation between collagenase production and biofilm formation. Eighty two Pseudomonas isolates were screened for biofilm formation, 28 isolates were classified as strong biofilm formers, 25 as moderate and 27 as weak biofilm former. The 28 isolates were identifid by VITEk - 2 Compact system which confirmed that the isolates were P.aeruginosa. Collagenase production assay was used to screen 28 isolates that were strong biofilm formers inorder to detect the ability of these isolates to produce collagenase, the substrate of collagenase (collagen) was purified localy from bovin tendon and the results showed that just 8 isolates could grow in mineral salt media with collagen after 4 days of incubation. The factors affecting biofilm formation and collagenase production were studied to determine the optimual conditions for their production, those factors included : 1 - Nitrogen sources represented higher influence on collagenase production specialy (yeast extract) in media containing collagen than other media without collagen as a substrate. The specific activity differed between the 8 isolates, biofilm formation also became more pronounced with (yeast extract), while NH4Cl and NaNO3 depressed biofilm formation at the same conditions. The statistical analysis between the two parameters (biofilm and collagenase) according to different nitrogen sources demonstrated highly significance at p?0.01 with yeast extract and casein. 2 - pH, results showed that the best pH for production was 7 for both collagenase and biofilm.The statistical analysis for determination the relationshipe between the two parameters showed highly significance at p ?0.01 for different pH. 3 - The maximum production of the two parameters was at 35?C temperature which gave highly significance at p?0.01 with defferent temperature. 4 - Long incubation periods revealed increasing in collagenase production and biofilm formation which represented highly significance detween them when incubation periods were prolonged at p?0.01. Results of this study showed that collagenase production increases when bacteria switch from a planktonic to biofilm phenotype. This indicates that biofilms and collagenase are more virulent and have a greater ability to cause tissue destruction. The REP - PCR analysis using BOX - primer, showed a clusters genetic relatedness among the isolates. The isolates were grouped according to the REP - PCR in 9 different genotypes, named cluster 1 to 3 which included C1, C2, C3 with relatedness : 8 (80%), 8 (86%), 3 (80%) respectively. A19 and A20 both of them were not included in any cluster, they have 78% similarity.The REP - PCR analysis showed that the genotypic relatedness is consistently high between the 8 producer isolates and non producer isolates (13), showed similarity reached 86

الاصابة ببكتريا Helicobacter pylori وعلاقتها بمرض تصلب الشرايين القلبية == Correlation Between Helicobacter Pylori Infection And Atherosclerotic Heart Disease

اسم المؤلف: رواء سعدي سلمان
اسم المشرف: مي خليل اسماعيل
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
الجامعة: جامعة بغداد
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: مرض قصور الشرايين التاجية هو النتيجة النهائية لتراكم اللويحات العصيدية ضمن جدران الشرايين التاجية مسببة نقص الاوكسجين وبالتالي حدوث مرض القلب الاقفاري. ويعتبر من الامراض الشائعة واحد الاسباب الرئيسية لحالات الوفاة في العالم. اضافة الى عوامل الخطورة التقلي | Coronary artery disease (CAD) is the end result of the accumulation of atheromatous plaque within the walls of the coronary arteries resulting in shortage of oxygen supply and ischemic heart disease (IHD). It was consider as one of the most common diseases and major causes of worldwide morbidity and mortality. In addition to traditional risk factors for cardiovascular disease, nowadays, accumulating evidence indicates that a variety of infectious agents may contribute to pathogenesis of CAD. The present study evaluated the anti - Helicobacter pylori IgG and IgA and the role of virulence factor of H. pylori cytotoxin associated gene (Cag A) and vacuolating associated cytotoxin (Vac A) as a risk factors for CAD.Eighty patients were divided into 2 groups : first group was 70 patients with CAD, the other group contained 10 patients with another coronary artery disease; they were admitted to Ibn Al - Bitar Specialist Center for Cardiac Surgery in Baghdad between October 2013 and January 2014. Ten individuals used as a healthy control group. All blood samples were tested biochemically such as glucose test, urea test, creatinine test and lipid profile test(cholesterol, triglyceride, LDL and HDL) and all of them showed normal results. The present study revealed that males were affected more than females (3 : 1); with no relation between their ages and bacterial infection.Serum IgG and IgA was Estimated by indirect immunofluorescent (IIF) whereas Cag A, Vac A and high sensitive C - reactive protein (hs - CRP) measured by enzyme linked immunosorbent assay (ELISA) and compared to control group results.The incidence of the anti - H.pylori IgG was highly significantly prevalent in CAD patients 78.57% (55/70), than in control group 0% (0/10), also a high significant difference in another CAD patient group 100%(10/10) as compared to control group 0% (0/10) (P? 0.01).Similarly anti - H. pylori IgA in CAD patients and another CAD patient groups showed highly significant increase when compared to control group 37.14% (26/70), 30% (3/10) and 0% (0/10) respectively (P? 0.01).The incidence of the CagA - positivity was significantly prevalent in mean value (2.74±0.19) in patients with CAD and another CAD patient group(2.72±0.31) than in control group (1.64± 0.16) (P? 0.05). Same result was observed with Vac A antigen; mean value of patient group showed significant increase (1.299 ± 0.04) when compared to controls group (1.41±0.13) (P? 0.05). Also significant increase found between another CAD patient group(1.79±0.17) and control group (1.41±0.13) (P? 0.05). Furthermore; the present study revealed significant differences of concentration levels between hs - CRP in CAD patient group (4.95 ± 0.38 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml), as well as a significant differences found between another CAD patient group (3.96 ± 0.96 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml) (P? 0.05).

دراسة بكتريولوجية لبعض الاجناس البكتيرية السالبة لصبغة غرام المقاومة لمضادات البيتالاكتام والمعزولة من اخماج المجاري البولية في محافظة ديالى == Bacteriological Study of Some Genus For Bacterial Gram - Negative Resistant To ? - Lactam, Isolated From Urinary Tract Infections In Diyala Province

اسم المؤلف: محمد خضير عباس النعيمي
اسم المشرف: عباس عبود فرحان الدليمي
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: العربية
مكان الجامعة: ديالى
الصفحات الاولى:
المستخلص: شملت الدراسة 300عينة جمعت من مرضى مصابين باخماج المجاري البولية وتم جمع العينات في مدينة بعقوبة من مستشفى البتول للولادة والاطفال ومستشفى بعقوبة التعليمي، للمدة بين 1/9/2013ولغاية1/1/2014.اظهرت نتائج الزرع البكتيري على اوساط اكار الماكونكي واكار الدم ووس | Three hundred urine from patients suffering from urinary tract infection from Baaquba Teaching Hospital and Al - Batool Hospital in Baaquba city for the period from 1/09/2013 to 1/01/2014. The results reved that 66 isolates are belonging to bacteria of Gram negative (57.4%), 25 (37.78 %) Escherichia coli, 22(33.33%) Proteus mirabilis, 9(6.06%)Klebsiella pneumonia, 5(7.57%) Enterobacter spp for 4 (25%) Enterobacter cloacae and 1(5.51%) Enterobacter aerogenes and5(7.57%) Pseudomonas aeruginosa by using diagnostic phenotypic, biochemical tests and confirm the diagnosis using regular aPI20E. Investigation of some virulence factors showed that both Escherichia coli and Proteus mirabilis produced haemolysin 52% and 90.9% respectively. The production of biofilm by local isolates was detected in Congo - red way, Isolates of Escherichia coli and Proteus mirabilis had been shown the ability to produce biofilm 92% and 90.9% respectively. The results showed that all isolates of Proteus mirabilis produced urease by 100%, while the results detect that the isolates of Escherichia coli not able to produce this enzyme. Proteus mirabilis showed ability to produce swarming with 100%. Siderophore production by Escherichia coli and Proteus mirabilis was 48%, 9% respectively. Eschrichia coli, and Proteus mirabilis produced bacteriocin with percentag of 32% and 50% respectively.The production of ? - lactamase by Eschrichia coli and Proteus mirabilis was 60% , 40.9% respectively, also the isolated had the ability to produce the Extendended spectrum ? - Lactamase enzyme by using disc Approximation, The production from each ofEschrichia coli and Proteus mirabilis 12%, 31.8 % respectively. Results of Metallo? - Lactamase by using the Imp - EDTA combination indicated that E.coli and P.mirabilis were 12% and 13.6% respectively. Isolates of E.coli showed highest resistance rate 92% for Augmentin while isolates of P.mirabilis showe higher resistant to cefotaxime 81.8%. The results showed that multiple resistance pattern for antibiotic 43 (91.5%) resistant to (2 - 5) antibiotics, Isolates of E.coli showed highest multiple resistance rate 92% while isolates of P.mirabilis rate 90.9%. The Minimal inhibitory concentration (MIC) for namely two antibiotics Cefotaxime, Ceftazidime were determined.MIC values of these antibiotics ranged between (2 - <1024), (4 - <1024) µg\ml E.coli and (2 - <1024), (8 - <1024) µg\ml P.mirabilis respectively. The results of molecular detection of ESBL genes (bla TEM and bla SHV) by using PCR technique, (9) samples from (10) total, divided into 3(100%) E.coli and 6(85.7%) P.mirabilis were harboring bla TEM gene based on the presence of 950 bp bands in 1% agarose gel. while results detect that the isolates of Escherichia coli and Proteus mirabilis not harboring bla SHV gene.

تحديد الصفات المظهرية والوراثية لانواع بكتريا المكورات المعوية المعزولة من المرضى في محافظة النجف الاشرف == Phenotypic And Genotypic Detection of Enterococcus Sp. Isolated From Patients In Al - Najaf Al - Ashraf Governorate

اسم المؤلف: زهراء حميد عودة القريشي
اسم المشرف: مهدي حسين محيل العمار
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: النجف
الصفحات الاولى:
المستخلص: The study aimed to isolate and identify the Enterococcus spp. from different clinical specimens and study the virulence factors of predominant species, as well as detected the virulence factors encoding genes such as efaA (endocarditis - associated antigen), esp (enterococcal surface protein), eep (stimulating of pheromones expression) and enlA (enterolysin A) genes by PCR techniques.There were three hundred clinical specimens collected from patients suffering from different clinical infections during the period from September 2013 to January 2014 in AL - Sadder Medical City and AL - Hakem General Hospital. The identification of the Enterococcus spp. isolates were depended on colonial morphology, microscopic examination and biochemical tests as a primary identification. The final identification was performed with the automated VITEK - 2 compact system using Gram positive - Identification (GP - ID) cards.According to the results obtained by the VITEK tests forty two clinical isolates of Enterococcus were detected, which distributed into : (22) isolates from urine, (8) vaginal swabs, (6) seminal fluid, (4) throat swabs and two isolates from wound swabs with no isolates from cerebral spinal fluid, stool and blood specimens.This study revealed that the E. faecalis is more distributed with 25(59.52%), followed by E. faecium with 10 (23.80%), E.avium with 5 (11.90 %), E. durans and E. raffinosus with 1(2.39%) for each.The study investigated the virulence factors of E. faecalis, E.faecium and E.avium, which play a major role in enterococcus pathogenicity. E. faecalis and E.faecium had the ability to producecapsule, gelatinase, biofilm, adhesion, protease, bacteriocin, haemolysin and cytolysin except ? - lactamase produced only by E. faecalis while E.avium produced all these virulence factors except gelatinase, bacteriocin and cytolysin.The results revealed variation in the resistance of bacteria to antibiotics, E.faecalis express absolute resistance (100%) to Erythromycin, high resistance against Gentamycin, Tetracyclin and Vancomycin but high susceptibility to Ciproflaxacin and Penicillin and moderate susceptibility to Chloramphenicol. E.faecium exhibited absolute resistance (100%) to Erythromycin, Gentamycin and Tetracyclin, high resistance against Chloramphenicol, Penicillin and Vancomycin but high susceptibility to Ciproflaxacin while E.avium exhibited susceptibility (100%) to all these antibiotics except Tetracyclin showed absolute resistance.Then detected the virulence factors encoding genes : efaA, esp, eep and enlA genes by using PCR techniques and Electrophoresis Systems.Finally, The genotypic method. Regard to genotypic study the outcome showed that 21(84%) isolates of E.faecalis, 4(40%) of E.faecium and 5(100%) of E.avium were carrying efaA gene and 17(68%) of E.faecalis, 5(50%) of E.faecium, 5(100%) of E.avium were carrying esp gene while eep gene was carrying only by E.faecalis and E.faecium ; 12(48%) and 3(30%) respectively. Also the results revealed that only 1(4%) isolates of E.faecalis have enlA gene.

التحري الجزيئي للجزر الوراثية المسؤولة عن المقاومة للمضادات الحياتية في العزلة baumannii A92 Acinetobacter == Molecular Detection Of Genomic Islands Responsible For Antimicrobial Resistance In Acinetobacter Baumannii Strain A92

اسم المؤلف: سهاد سعد محمود العجيلي
اسم المشرف: اليس كريكور ملكونيان | علي حسين ادحيه
الموضوع العام: علوم الحياة
السنة: 2014
الدرجة: دكتوراه
الجامعة: جامعة بغداد
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى: