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دراسة جزيئية وبكتريولوجية لبكتريا Porphyromonas gingivalis المعزوله من المرضى المصابين بامراض اللثه == Molecular and Bacteriological Study of Porphyromonas gingivalis Isolated from Patients with Periodontitis

Author name: فاطمة مالك عبود
Supervisor name: محمد صبري عبد الرزاق السعيد | الهام عباس بنيان
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: تم جمع 103عينة من الصفيحة الجرثومية العميقة (subgingival dental plaque) من المرضى الذين يعانون من التهاب اللثة المزمن والمتقدم (72, 31) على التوالي لمراجي العيادة الاستشارية لامراض اللثة في كلية طب الاسنان/ جامعة بابل والمركز التخصصي لطب الاسنان في مدينة الحلة. للفترة من كانون الاول 2013 الى حزيران 2014. تم تشخيص وعزل بكتريا P. gingivalis بطرق مختلفة منها استخدام الطرق البكتيرية التقليدية واظهرت النتائج ان 69.5%) 16) منها تم عزلها من التهاب اللثة المزمن وتم عزل 7 (30.5) من التهاب اللثة المتقدم باستخدام التنمية على الوسط الانتقائي الخاص لهذه البكتريا. وكذلك تم استخدام طريقة التشخيص الجزيئي باستعمال المعلم الوراثي المستند على دور جين 16s rRNA حيث اظهر ان12 عزلة من اصل 23 عزلة تم تشخيصها بشكل نهائي انها تعود لبكتريا P. gingivalis. منها حوالي 8 تعود الى التهاب اللثة المزمن و4 تعود الى التهاب اللثة المتقدم. بالاضافة الى ذلك, تم التحري عن قابلية هذه البكتريا للالتصاق(adherence ability) بالخلايا الطلائية المبطنة للفم حيث وجد ان جميع العزلات لها القابلية على الالتصاق بهذه الخلايا وتم ايضا اختبار قابليتها على انتاج انزيم (Gingpain) ووجد ان جميع العزلات منتجة الى هذا الانزيم.في هذه الدراسة تم التحري المظهري عن عملية تكوين الاغشية الحيوية(Biofilm formation) للعزلات المدروسة باستخدام فحص tissue culture plate test (TCP) اذ كانت مكونة للاغشية الحيوية بنسبة 100% وكذلك تم فحص تاثير بعض المواد المستخدمة في طب الاسنان على انتاج biofilm ووجد ان اعلى تثبيط سجل للكلورهكسدين (غسول الفم) والشب (Alum)ويليه تاثير Clove مقارنة باقل تاثير لمادة السعد ((Cyprus rotundus. وكذلك تم الكشف عن حساسية العزلات لبعض المضادات الحيوية ووجد بان كل العزلات كانت حساسة الى Co - amoxiclave وعلى العكس اغلب العزلات تظهر مقاومة عالية لل Amoxicillin بينما سجلت مقاومة قليلة جدا لل Ampicillinو Metronidazole(16.3%, 20.3%, ) على التوالي. واخيرا تم فحص تاثير بعض المواد المستخدمة في طب الاسنان على تثبيط نمو هذه البكتريا وتوضح النتائج ان اعلى تاثير سجل للكلورهكسدين (غسول الفم) والشب (Alum)ويليه تاثير القرنفل(Clove) mm) 25,30,40) على التوالي مقارنة باقل تاثير لمادة السعدC. rotundus (10mm) .في هذه الدراسة ايضا تم التحري عن التغاير الجيني ((TLR - 4 Polymorphisms باستخدام تقنية البلمرة والقطع بالانزيم ((PCR - RFLP. وتبين من النتائج وجود ثلاث انماط جينية في موقع طفرة Thr399Ile : CC وCT وTT ، اذ بلغت نسبة انتشارها ((12.5%,10%,77.5% في مجموعة المرضى على التوالي بينما هناك فقط نمطين في مجموعة السيطرة TT,CCوبنسبة انتشار(36.6% ,63.4%) على التوالي ، فيما بلغت نسبة انتشار الاليلC السائد في المرضى 82.5 % بالمقارنة للسيطرة 63.3% مع وجود اختلاف معنوي. وفي المقابل سجل وجود ثلاث انماط جينية في موقع طفرة Asp299Gly : AA وAG وGG وبنسبة انتشار % 67.5 و12.5% و20% في مجموعة المرضى على التوالي بينما هناك فقط نمطين في مجموعة السيطرة GG, AA وبنسبة انتشار34.4%) 66.6%,) على التوالي. حيث سجلت نسبة انتشار الاليل A السائد (73.75%) في مجموعة المرضى بالمقارنة بمجموعة السيطرة (66.6%) وبفرق معنوي. | In this study, 103 clinical samples were collected from subgingival dental plaque of patients with chronic (CP) and aggressive periodontitis (AP) (72 and 31) respectively, and (n=30) a healthy group admitted to teaching Hospital in college of Dentistry / Babylon University and specialized center of Dentistry in Hilla city, From February 2013 to June 2014). Out of which (n=40) with a chronic periodontitis group from them blood sample were collected for detection of gene polymorphisms in Toll - like receptor - 4 (TLR - 4). These dental plaque samples were subjected to different methods for identification of P. gingivalis mainly traditional bacteriological method. It was found that 23 P. gingivalis isolates were recovered by using selective media where 19 isolates (26.3%) obtained from (CP) and 4 isolates (12.5%) from (AP). Furthermore, molecular detection method was applied by using 16s rRNA gene as a genetic marker for confirmation of detection of P. gingivalis isolates, 12 isolates of P.gingivalis out of 23were detected by molecular method focusing on the role of 16s rRNA gene of P. gingivalis. 8 isolates were isolated from CP, and 4 isolates were isolated from AP subgingival plaques. In addition, these 12 isolates were investigated to detect Adherence of P.gingivalis to oral epithelial cells. The result showed that all isolates have ability to adhere to oral epithelial cells. The study also detected the ability of this bacteria for production of Gingipain, it was found that all isolates were positive for this enzyme at a rate 100%.Furthermore, biofilm formation was tested in the semi quantitative microtiter plate test. The results revealed that all isolates were biofilm former, high and moderate biofilm formation mode were accounted for (50%) while there are no isolates that express non biofilm formation.Regarding to effect of Chlorhexidine (CHX) gluconate (0.12%) on biofilm formation, the results of this study demonstrated (CHX) effectively and reduced the viability of biofilm - forming bacteria from moderate to 25%, weak to 75% and no strong. The study was also evaluating the effect of some plant extracts on biofilm formation. The results showed the highest effect for Alum potassium phosphate followed by Clove, in contrast to lowest effect of C. rotundus. And after screening the effect of Flagyl solution on production of bacterial pigment. The results showed that the metronidazole produced the highest inhibition activity range (30 - 10mm). Furthermore, the susceptibility of isolates to a variety of antibiotics had been investigated and it had been found that all isolates were sensitive to co - amoxiclave and, in contrast, the isolates showed high resistance to other type of beta lactam such as amoxicillin (54.3%). In addition, the result showed that the resistance of p. gingivalis was very low for ampicillin and metronidazole (16.3% and 20.3%), respectively.The screening of antimicrobial activity of (CHX) gluconate (0.12%) was carried out and the results showed that it produced the highest inhibition activity whether against p. gingivalis with inhibition zone range 40 - 15mm. Finally in vitro antibacterial activity of Alum, Clove and Cyperus rotundus plant extracts was studied and the results revealed that all tested isolates were inhibited by aqueous extracts at 50% concentration. The maximum inhibition zone was observed in Alum and Clove extracts respectively (30mm, 25mm), compared to the minimum inhibition by Cyperus rotundus (10mm). The antibacterial actions of 20% concentration of plant extract gave lower inhibition zone than 50% concentration of that extract which represented by (19mm, 16mm, and 10 mm) of the previous three mentioned extracts. This study also aimed to investigate the association of Thr399Ile and Asp299Gly single nucleotide polymorphisms (SNPs) in the (TLR - 4) with the incidence of (CP).The results revealed at the site of SNPThr399Ile, there were three genotypes for this SNP among CP patients; CC, CT and TT with frequency of 77.5%, 10% and 12.5 % respectively, whereas, there were only two genotypes among control group; CC and TT with frequency of 63.4% and 36.6% respectively with no significance differences between patients and control. However, the frequency of allele C (dominant) was higher among CP group (82.5%) than control (63.3) with significant difference. The site of SNP of Asp299Gly also showed three genotypes among CP patients; AA, AG and GG with frequency of 67.5%, 12.5% and 20% respectively, whereas, there were only two genotypes among control group; AA and GG respectively with frequency of 66.6 and 34.4% respectively with no significance differences between patients and control. However, the frequency of allele A (dominant) was higher among CP group 73.75 % than control 66.6%.

دراسة لبعض الخصائص الوبائية والمصلية لاصابات الـBordetella perlussis في محافظة بابل

Author name: عمار عباس شعلان
Supervisor name: محمد عبود القرة غولي | يحيى الطفيلي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تهدف هذه الدراسة الى وصف بعض الخصائص الوبائية للسعال الديكي في محافظة بابل وتقييم الاضداد المتخصصة للـ Bordetella pertussis IgG وIgA باستخدام تقنية الـ ELISA للتشخيص المختبري للسعال الديكي، هذا بالاضافة الى قياس الاستجابة المناعية الخلطية للقاح الثلاثي (DPT). جمعت عينات الدم من : 68 طفل مصاب بالسعال ديكي راقد في المستشفى (36 غير ملقح و32 ملقح) ، 103 من اشخاص اسوياء (49 شخصا ملقحا، 54 شخصا غير ملقح) و20 من العاملين بالخدمة الصحية في محافظة بابل. اضداد Bordetella pertussis IgG وIgA تم قياسها بواسطة تقنية الـ ELISA لكل مجموعات الدراسة. التعداد الكلي والتفريقي للخلايا البيضاء اجري للـ68 مريض و20 من مجموعة السيطرة. اظهرت الدراسة ان اعلى مستوى حدوث للسعال الديكي لوحظ في المرضى اقل من عمر سنة (49% من مجموع الحالات). كانت نسبة الذكور للاناث 1.27 : 1. 71% من المرضى مقيمين في المناطق الريفية مقارنة بـ 29 % في المناطق الحظرية. 36 (53%) من المرضى كانوا غير ملقحين و26 (38%) كانوا ملقحين جزئيا، بينما 6 (9%) تلقوا تلقيحا كاملا (3 جرعات من اللقاح الثلاثي). لوحظت مضاعفات السعال الديكي في 88% من المرضى، والتي كانت بصورة رئيسية الاختناق (88%)، اختلاجات (26%)، ذات الرئة (29%)، والوفاة (4%). كما لوحظ ارتفاع في تعداد الخلايا البيضاء في 64% من المرضى وارتفاع في تعداد الخلايا اللمفاوية في 69% من المرضى. معظم الحالات سجلت خلال الفترة بين شهر نيسان وتموز. كانت الحساسية والتخصص التشخيصي لاضداد الـ Bordetella pertussis IgG في الاطفال غير الملقحين كانت 77% و100% على التوالي، في حين كانت الحساسية والتخصص التشخيصي لاضداد Bordetella pertussis IgG في الاطفال الملقحين 67%، 91% على التوالي. كانت الحساسية والتخصص التشخيصي لاضداد الـ Bordetella pertussis IgA في الاطفال غير الملقحين كانت 33% و100% على التوالي، في حين كانت الحساسية والتخصص التشخيصي لاضداد Bordetella pertussis IgA في الاطفال الملقحين 72%، 86% على التوالي. لوحظت افضل حساسية وتخصص تشخيصي في العيانات التي جمعت بعد اكثر من 21 يوما بعد ظهور اعراض السعال الديكي. تم الحصول على اعلى حساسية وتخصص تشخيصي (92، 82% على التوالي) باستعمال مستوى موجب لـ اضداد Bordetella pertussis IgG او IgA. اظهرت الدراسة ان متوسط مستوى اضداد Bordetella pertussis IgG في الاسوياء الملقحين كانت 56.41 U/ml (المدى 19.77 - 143.89 U/ml)، بينما بلغ متوسط اضداد Bordetella pertussis IgG في الاسوياء غير الملقحين 29.33 U/ml (المدى 1.01 - 56.9 U/ml). كان متوسط مستوى اضداد Bordetella pertussis IgA في الاسوياء الملقحين كانت 9.05 U/ml (المدى 3.6 - 29.74 U/ml)، بينما بلغ متوسط اضداد Bordetella pertussis IgA في الاسوياء غير الملقحين 4.79 U/ml (المدى 3.05 - 7 U/ml). اظهرت الدراسة ان 10.7 % (11/103) من الاسوياء يظهرون مستوى موجب لاضداد Bordetella pertussis IgG او IgA، في حين اظهر 70% (14/20) من العاملين في الخدمة الصحية في هذه الدراسة مستوى موجب لاضداد Bordetella pertussis IgG او IgA | The aims of this study is to describe some of the epidemiological features of pertussis in Babylon Province in Iraq, and to evaluate the specific anti Bordetella pertussis IgG and IgA ELISA technique in the laboratory diagnosis of pertussis, and to determine the humoral immune response to DTP vaccine. Blood samples were obtained from the following groups : 68 (36 unvaccinated and 32 vaccinated)clinically diagnosed hospitalized pertussis patients, 103 normal healthy subject of similar age groups (49 vaccinated and 54 unvaccinated) and 20 healthcare workers in Babylon Province. The anti Bordetella pertussis IgG and IgA antibodies were tested by ELIZA technique in all study groups. The study shows that the highest incidence of pertussis was noticed in patients less than 1 year (49% of the total pertussis patients). The male to female ratio was 1.27 : 1. There were 71% of pertussis cases from rural area compared with 29% from urban area. 36 (53%) of the patients were unvaccinated and 26 (38%) of the patients were partially vaccinated, while only 6 (9%) are fully vaccinated (3 doses of DTP vaccine). Complications were noticed in (88%) of the patients; they are mainly apnea (88%), seizure (26%), pneumonia (29%), and death (4%). Most cases were noticed between March and July. The anti Bordetella pertussis IgG diagnostic sensitivity and specificity in unvaccinated subjects were 77%, 100% respectively; while in vaccinated subjects they were 67%, 91% respectively. The anti Bordetella pertussis IgA diagnostic sensitivity and specificity in unvaccinated subjects were 33%, 100% respectively, while in vaccinated subjects they were 72%, 86% respectively. The best diagnostic sensitivity and specificity was observed in samples collected after > 21 days of the onset of pertussis symptoms. The higher diagnostic sensitivity and specificity were obtained by using anti Bordetella pertussis IgG or IgA positive levels. The study shows that the anti Bordetella pertussis IgG mean level in DPT vaccinated normal subjects was 56.41 U/ml (range 19.77 - 143.89 U/ml), while it was 29.33 U/ml (range 1.01 - 56.9 U/ml) in unvaccinated subjects. The anti Bordetella pertussis IgA mean level in vaccinated normal subjects was 9.05 U/ml (range 3.6 - 29.74 U/ml), while it was 4.79 U/ml (range 3.05 - 7 U/ml) in unvaccinated subjects. There is 10.7% (11/103) of the normal subjects which have a positive anti Bordetella pertussis IgG or IgA levels. In addition, 70% (14/20) of the healthcare workers in this study have a positive anti Bordetella pertussis IgG or IgA levels.

دراسة الملف المصلي وتقييم بعض الخصائص المناعية لدى مرضى الحزام الناري == Serum Profile Study And Evaluation Of Some Immune Features Among Patients With Shingles

Author name: زينب عبد النبي طليفح النصراوي
Supervisor name: حبيب صاحب نهر | محمد كاظم طاهر الحطاب
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: اجريت الدراسة الحالية للفترة من 1شباط 2015 لغاية 3شباط 2016 وجمعت خلالها عينات المرضى المصابين بالحزام الناري من قسم الامراض الجلدية في العيادات الاستشارية في مستشفى مرجان التعليمي للتحري عن بعض الجوانب المناعية في المرضى, وكان العدد الكلي للمرضى 50 مريضا | This study was conducted during the period from 1st February 2015 to 3rd February 2016, and the samples were collected from dermatology department of the consultant clinic in Marjan Teaching Hospital to investigate certain immunological markers of patients with shingles. The total number of patients were whose their ages ranges were 14 - 80 years. Age group (40 - 61) years have the highest percentage of infection reaching 46%.The immunofluorescence test for Varicella Zoster virus - specific IgG showed 48 out 50 are positive(96%). The higher percentage of infection with shingles was in female (54%), while male patients the percentage was(46%).The results showed that patients with blood group (O+) have 50% of infection rate.When CD4 was investigated by ELISA test , the results showed that the mean± SD of serum level of CD4 in shingles patients and control group is (6.70± 0.97 and 9.36±2.02) ng/ml respectively. The concentration of CD4 was lower in patients with shingles than healthy control group, while concentration of CD8 and CD56were higher than healthy control group ( the mean± SD of serum level of CD8 in shingles patients and control group was 21.42±5.43 and19.11±3.29 ng /ml respectively, whereas the mean ± SD of CD56 concentration in shingles and control group were 107.58± 40.39 and 67.59 ± 36.31 ng/ml, respectively).The results also showed that the concentrations of IFN ? and TNF? were lower in patients with shingles compared with non - infected persons , as the following : the mean± SD of serum level of IFN ? in shingles patients and control group was 184.31±21.95 and 218.03±26.21 pg /ml respectively, and the mean ± SD of TNF? concentration in shingles and control group were 51.55± 5.14 and 62.35 ± 6.74 pg/ml, respectively. For IL 10, the concentration was higher in patients with shingles than that in the healthy control group; the mean± SD of serum level of IL 10 in shingles patients and control group was12.42±5.59 and 4.47±0.90 pg /ml respectively. This study was concluded following : • Gender represents a risk factor for the occurrence of shingles mainly at ages over 40 years old (higher in females than males).• Varicella Zoster virus specific IgG is a sensitive and specific test that can be used for the laboratory diagnosis of shingles.• Varicella Zoster virus reactivation has a suggested link with decreased level of soluble CD4 molecules and, for lesser extend with increased soluble CD8 and CD56 molecules in patients serum. • Blood group O+ might be consider as a risk factor for reactivation of VZV infection as the majority of patients were within this blood group.• A diminished role of the inflammatory TH1 cells in reactivated shingles patients is more likely as evident by the reduced concentration of IFN? and TNF? profiles. The Treg cells (CD4+ CD25+) seems to play a role in such reduction of TH1 proinflammatory cytokines as evident by the significant elevation of IL10 in shingles patients.

التوصيف الجزيئي لعوامل الضراوة المرتبطة باصابات بكتريا المكورات العنقودية السالبة للتخثير والمعزولة من المصابين بالتهاب المجاري البولية في محافظة بابل == Molecular Characterization Of Some Virulence Associated Factors For Coagulase - Negative Staphylococci Isolated From Urinary Tract Infection In Babylon Province

Author name: سارة هاشم داخل الحلي
Supervisor name: محمد صبري عبد الرزاق السعيد | جواد كاظم الخفاجي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: يهدف هذا البحث الى دراسة بكتريا المكورات العنقودية السلبية التخثر, وشملت الدراسة جمع120 عينة ادرار من المرضى المصابين بالتهاب المجاري البولية من الاشخاص المراجعين والراقدين في مستشفى بابل للنسائية والاطفال ومستشفى الحلة التعليمي وللفترة من كانون الاول 201 | This work aims to study coagulase - negative Staphylococci, which included 120 urine sample were obtained from patients suffering from urinary tract infection; who attained to Babylon Maternity and Pediatrics Hospital, and Al - Hilla General Teaching Hospital, during the period from December 2015 to March 2016), they were diagnosed as having UTI by the Urologists. The samples were analyzed for any signs of infection and immediately inoculated on blood and MacConkey agar media plates. All plates were incubated aerobically at 37 ?C for 24 - 48 hrs.Results of morphological and biochemical characterization revealed that out of total of 120 urine samples, 110 showed positive culture, among them 37 isolates are belonged to coagulase - negative Staphylococci, other 73 isolates belonged to other bacterial genera.Molecular detection of coagulase gene (coa) was done for all CoNS isolates. The results showed that 28/37 isolates (75.67%) were positive for this marker, distributed as follows : S. epidermidis gave 15 isolates, S. saprophyticus gave 9 isolates and S. haemolyticus gave 4 isolates.Also, molecular investigation of fnb A and B genes are carried out for all CoNS isolates by using specific PCR markers. 13/37 isolates (35%) were positive for fnb A gene, as 6/13 of S. epidermidis, 5/13 of S.saprophyticus and 2/13 of S. haemolyticus have this gene in their genome. On the other hand, only 4/37 isolates gave positive result for fnb B gene; as 2 isolates of both S. saprophyticus and S. epidermidis have this gene in their genome.Moreover, sec gene also was investigated in CoNS isolates. The results showed that all CoNS isolates are free from this gene.Regarding urease enzyme production, S. epidermidis and S.saprophyticus isolates were found to be urease positive, while S.haemolyticus isolates display urease negative.To demonstrate the ability of bacteria to form struvite stone, urine samples obtained from healthy individuals were used. It was found that struvite stone was formed by S. epidermidis and S. saprophyticus isolates.Moreover, susceptibility to 10 antibiotics were tested by using disc diffusion test (DDT). S. epidermidis was showed 100% resistance for each Methicilline, Ceftriaxone, Ceftazidime and Cefoxitin. Also, it show high resistance 94%, 88%, 88%, 76%, and 59% for Impenem, Gentamycin, Pipracillin, Ciprofloxacin and Amikacin respectively. However, S. epidermidis showed low resistance (6%) for Vancomycin. So, all S. saprophyticus isolates showed high resistance (100%) to each Pipracilline, Ceftriaxone, Methicillin, Ceftazidime and Ciprofloxacin. It showed high resistance (92%) for each Vancomycin and Imipenem, and (83%), (75%), (75%) for Cefoxitin, Gentamycin and Amikacin respectively. In addition to that, all S. haemolyticus was showed (100%) resistance for each Ceftriaxone, Pipracillin, Methicilline, Ceftazidime and Cefoxitin. Also, showed high resistance (75%), (63%) and (50%) for Gentamycin, Amikacin and Ciprofloxacin respectively. While it was showed low resistance (13%) to Vancomycin.

الصورة البكتيرية والنسيجية المرافقة لالتهاب اللوزتين المزمن والادينويد عند الاطفال == Bacteriological And Histopathological Profile Associated With Chronic Tonsillitis And Adenoid Hypertrophy In Children

Author name: رشا محسن كاظم الحسيني
Supervisor name: حبيب صاحب نهر | صفاء حسين الطريحي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: This study aimed to investigate the bacterial profile of surface and core of infected tonsils and adenoid tissues and histopathological examination of these organs.A total of 122 samples represented by 63 excised tonsils and 59 excised adenoids in addition to 57 blood samples were collected from 70 patients who were referred to Hilla Teaching Hospital (Ear, Nose and Throat unit) in Hilla city within a period of four months from November 2015 to February 2016. Those patients weresuffering from chronic tonsillitis and adenoid hypertrophy. The ages of those patients ranged from 2 to 15 years, 41 (59%) of them were males and 29 (41%) were females.The study included three main parts. The first one was the bacterial diagnosis based on relied diagnostic procedures. Second part was the detection of antistreptolysin O (ASO) by using latex agglutination test, while the third part included histopathological study to detect the pathological lesions that occur during these infections.The results indicated that, the most age group being susceptible for chronic tonsillitis and adenoid hypertrophy was the group of 7 - 10 years, represented 33 patients with a percentage of (47%). Among this group, males were more susceptible with percentage of 20 (29%) compared to female patients13 (19%).The surface of all samples (tonsil and adenoid) revealed positive results for bacterial culture, while in the core of tonsil only 44 samples (70%) were positive for bacterial culture while 19 samples (30%) were negative results (no growth). As in tonsils, the core of adenoid revealed positive results in 32 (54%) samples, while 27 (46%) samples were negative results.The suspected isolates were fully identified by using bacteriological, biochemical and Vitek 2 techniques (for two isolates because of those isolates give variable biochemical test results which confused their diagnosis that lead to using of vitek system technique to diagnosis them, these isolates were rare bacteria that infect tonsil and adenoid). The most common types of bacterial isolates were Staphylococcus aureus which accounted for 75 isolates (23.6%), followed by Streptococcus pyogenes 61isolates (19%), Escherichia coli 57 isolates (18%), Klebsiellae pneumoniae 55 isolates (17.3%), Hemophilus influenza 37 isolates (11.6%), Sphingomonas paucimobilis 14 isolates (4.4%), Staphylococcus epidermides 7 isolates (2.2%), Pseudomonas aeruginosae 6 isolates (2%), Pseudomonas stutzeri 5 isolates (1.6%), and Staphylococcus saprophyticus only one isolate (0.3%).Regarding the bacterial population, there is a difference between tonsils / adenoid surface and tonsil/ adenoid core culture were the most predominant isolate from tonsil surface was Staphylococcus aureus and K. pneumoniae from tonsillar core, while from adenoid surface was Streptococcus pyogenes whereas E. coli from adenoid core.The ASO titer in patients with or without group A streptococcal infections were determined by using latex agglutination test. The results revealed that 8 samples (14%) exhibited positive results, while 49 samples (86%) exhibited negative results out of 57 samples. The results showed statistically no significant differences between patient age groups but showed highly significant differences between males and females.Eight specimens were taking for histopathological examination randomly, four samples were adenoids and four samples were tonsils. The histopathology examination of tonsil and adenoid showed the presence of lymphoid hyperplasia,multiple lymphoid follicles, vascular congestion, fibrosis, germinal centers, infiltration of inflammatory cells, necrosis and apoptosis of tissues

التشخيص الجزيئي لتجرثم الدم لدى الاطفال حديثي الولادة بواسطة استخدام تفاعلات البلمرة المتسلسل في مدينة الحلة == Molecular Detection of Neonatal Sepsis By Using PCR In Hilla City

Author name: نور حامد عباس المرزوك
Supervisor name: الهام عباس بنيان الساعدي | ميساء صالح الشكري
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: في هذه الدراسة, تم جمع 85 عينة دم من 85 مريض مصابين بتسمم الدم (حسب التشخيص السريري الاولي للطبيب), تتراوح اعمارهم بين 1 - 28 يوم من كلا الجنسين (الذكور 53 والاناث 32) للفترة من تشرين الثاني 2014 الى اذار 2015.توضح نتائج هذه الدراسة ان (52,9%) طفلا حديث | Neonatal sepsis can be defined as any systemic bacterial infection confirmed by a positive blood culture in the first month of life. In this study, (85) blood specimens were collected from (85) patients with suspected septicemia, age ranged between 1to 28 days from both sexes (53 males and 32 females) during the period from November 2014 to March 2015.The results of this study revealed that (52.9%) are presented with late onset sepsis (infected during 7 - 28 days of their life), while the rest (47.1%) of the neonates are presented with early onset sepsis (infected during the first seven days of their life). The collected samples were investigated for bacterial isolation. Bacterial culture was positive in (7.06%) patients versus (92.9%) patients revealed a negative bacterial culture. The most common types of bacteria isolated were three isolates of Klebsiella spp. (50.0%), followed by one isolate Staphylococcus aureus (16.67%), one isolate E. coli (16.67%), and one isolate Enterobacter spp. (16.67%).The virulence factors of some bacterial isolates in this study were studied. The capsule was present in all bacteria isolated in this study (100%) except for Enterobacter spp. which did not possess the capsule.Colonization factor antigens were detected in all isolates. It was found that only Klebsiella spp. and E. coli (100%) have the ability to produce CFAI and CFAIII. Whereas Enterobacter spp. and Staphylococcus aureus (100%) have the ability to produce colonization factor antigen I only. The results also showed that all isolates of Klebsiella spp. and Enterobacter spp. did not produce hemolysin, while all isolates of Staphylococcus aureus and E. coli were able to produce hemolysin.Extracellular protease was also investigated. It was found that (100%) of all bacteria isolated in this study were able to produce extracellular protease.Biofilm formation was investigated in all bacterial species, and the results showed that all isolates of Gram negative bacteria and Gram positive bacteria form a biofilm.The ability of some bacteria to produce bacteriocin was tested and the results showed that E. coli and Klebsiella spp. were able to produce bacteriocin.In - vitro, the susceptibility of bacteria towards some antibiotics included in this study revealed that the amikacin and kanamycin are the most effective antibiotics to different types of pathogenic bacteria. Finally, molecular detection for bacterial sepsis was done by using specific primers (16 sRNA, rpoB and its). It was found that 16 sRNA genes were present in (20%) of samples and rpoB gene present in (18.8%). While its gene used for detection of fungi revealed negative results in all samples.

عزل بكتريا Bacillus cereus من بعض عينات الغذاء == Isolation of Bacillus Cereus From Some Foods Samples

Author name: ضحى عبد الله كاظم الظويهري
Supervisor name: حبيب صاحب نهر
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: كائن Bacillus cereus موجود في كل مكان وهوممرض منقول بالاغذية والذي يمكن ان يسبب نوعين من امراض الجهاز الهضمي : القيء والاسهال. في هذه الدراسه, تم جمع 140 عينه غذائية شملت (الرز, اغذية الاطفال، الدقيق، منتجات الالبان، اللحوم، الحليب , التوابل) جمعت عشوائيا | Bacillus cereus is a ubiquitous organism and a potential foodborne pathogen that can cause two types of gastrointestinal diseases : emesis and diarrhea. In this study, a total of 140 food samples included (rice, infant food, flour, dairy products, meat, milk powder and spices) were collected randomly from restaurants, food stores and various sale points in the local markets of the Hilla province during the period of November 2014 to April 2015 in attempt to isolate of Bacillus cereus from these samples and detection the prevalence of diarrheal (hbl and nhe) and emetic (ces) enterotoxins genes by using Polymerase Chain Reaction (PCR). All bacterial isolates were identified by cultural, microscopic and biochemical examinations. The results showed that 56 (40%) of samples showed positive growth for Bacillus cereus. The antibiotic sensitivity test of some isolates to 10 antibiotics was studied. It has been found that all B. cereus isolates were resistant to Ampicillin, Ampiclox, Cefotaxime, and Cephalexin, while all isolates were sensitive to Gentamycin, Ciprofloxacine and Chloramphenicol, but most of them showed different rate of sensitivity to one or more of antibiotics such as Neomycin 90% and 80% for both Tetracycline and Erythromycin. Polymerase Chain Reaction technique (PCR) was used to detect the ability of bacterial isolates to encode two types of enterotoxin genes, diarrheal and emetic genes. The results showed that 4(7.14 %) of isolates harboured hblA gene, 16 (28.57%) hblC, 5(8.92 %) hblD, 46(82.14%) nheA, 24(42.85%) nhe B, 26 (46.42%) nheC and 3(5.35%) of the isolates harboured Ces gene. On the other hand, through using PCR it was found that nhe gene was present in most isolates, while hbl gene was variable among the studied isolates. Moreover, the Ces gene was found only in isolates being isolated from rice samples, while it was not found in other types of samples.

التوصيف الجزيئي لبعض عوامل الضراوة لبكتريا Moraxella catarrhalis المعزولة من اصابات الاذن الوسطى == Molecular Characterization Of Some Virulence Factors Of Moraxella Catarrhalis Isolated From Otitis Media

Author name: جمان خليل ابراهيم الصباغ
Supervisor name: محمد صبري عبد الرزاق | صفاء صاحب الغزالي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دور التعدد الشكلي للجينات المسؤولة عن السايتوكينات في النساء ذوات الاجهاض المتكرر == Role Of Cytokines Gene Polymorphism In Women With Recurrent Miscarriage

Author name: رفاه فخري مزاحم الجبوري
Supervisor name: محمد صبري عبد الرزاق السعيد | محمد عبد كاظم السعدي
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

الكشف الجزيئي والمصلي للكلاميديا الرئوية لمرضى القلب والاوعية الدموية في محافظة كربلاء == Molecular And Serological Detection Of Chlamydia Pneumoniae In Patient With Cardiovascular Diseases In Karbala Province

Author name: جاسم حمزة خضير المسعودي
Supervisor name: محمد عبد كاظم حسن السعدي | ميساء صالح مهدي الشكري
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسة ميكروبية ونسيجية مرضية عن الاصابات الفطرية الجلدية الحلقية في محافظة بابل == Microbiological and Histopathological Study on Dermatophytes Infections in Babylon Province

Author name: عدي حسين كاظم
Supervisor name: حبيب صاحب نهر | محمد كاظم طاهر الحطاب
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

عزل والتشخيص الجزيئي لفيروسي المخلوي التنفسي والميتانيمو وعلاقتهما مع الحالة المناعية لمرضى الربو في محافظة واسط / العراق == Isolation and Molecular Identification of Human Respiratory Syncytial Virus and Metapneumovirus and their Relation with Immune Status of Asthmatic Patients in Wasit Governorate / Iraq

Author name: جلال عبد الرزاق تفاح العزاوي
Supervisor name: علاء هاني حسن الجراخ | غانم عبود المولى
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

التوصيف الجزيئي لجينات المقاومه للتت راسايكلين لبكتريا Aeromonas hydrophila والمعزولة من عينات الخروج == Molecular Detection of tetracycline - resistance genes in Aeromonas hydrophila isolated from stool specimens

Author name: لبنى عبد المطلب حكيم الشلاه
Supervisor name: علاء هاني حسن الجراخ
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

الصورة المناعية والبكتيرية لنساء مستخدمات عقارات موانع الحمل الهرمونية في محافظة بابل == Immunological And Bacteriological Profiles For Women Using Hormonal Contraceptive Drugs In Babylon Province

Author name: خديجة عبيد عمران
Supervisor name: محمد عبد كاظم حسن السعدي | اسماء كاظم كاطع
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسة تكوين الاغشية الحيوية وتاثير بعض مضادات الحيوية الموضعية على البكتيرية المعزولة من اصابات الحروق == Study Of Biofilm Formation And The Effects Of Some Topical Antimicrobial Agents On Bacteria Isolated From Burn Wound Infections

Author name: نكتل فائز ناصر السعد
Supervisor name: محمد صبري عبد الرزاق السعيد | الهام عباس بنيان الساعدي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسة تشخيصية ومناعية لبكتيريا Mycobacterium tuberculosis == Diagnostic And Immunological Study Of Mycobacterium Tuberculosis

Author name: نزار علي شريف الزبيدي
Supervisor name: محمد عبد كاظم حسن السعدي | جواد كاظم الخفاجي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسة بكتريولوجية ووراثية لبعض العزلات لبكتريا Proteus mirabilis وProteus vulgaris في مدينة الحلة == Bacteriological And Molecular Study Of Some Isolates Of Proteus Mirabilis And Proteus Vulgaris In Hilla Province

Author name: ميس هادي جبر ال جمعة
Supervisor name: الهام عباس بنيان الساعدي | جواد كاظم الخفاجي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسة العلاقة التطورية الوراثية والجزر المرضية لبكتريا القولون المعزولة من عينات سريرية مختلفة == Phylogeny And Pathogenicity Islands Among Escherichia Coli Isolated From Clinical Cases

Author name: لميس عبد الرزاق عبد اللطيف
Supervisor name: محمد صبري عبد الرزاق السعيد
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

دراسة علاقة تعدد الاشكال الجينية لجيني مستقبل TLR4 وCXCL8 والاصابة بطفيلي المشعرات المهبلية مع سرطان البروستات == Study Of The Association Of Single Nucleotide Polymorphism In Toll - Like Receptor - 4 And CXCL8 Genes, And Trichomonas Vaginalis Infection With Prostate Cancer

Author name: قاسم شرهان حرج المياح
Supervisor name: محمد عبد كاظم حسن السعدي | رباح نجاح جبار
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

دور التغايرات الوراثية البشرية في قابلية الاصابة بالتدرن في محافظة بابل/العراق == Role Of Human Genetic Polymorphisms In Susceptibility To Tube¬Rculosis In Babil Province - Iraq

Author name: عمار عباس شعلان الحميري
Supervisor name: حبيب صاحب نهر | محمد عبد كاظم السعدي
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

الابشتاين بار فايروس ومرضى التهاب اللوزتين المزمن في محافظة كربلاء - العراق == Epstein - Barr Virus With Chronic Tonsillitis Patients In Kerballa Governorate - Iraq

Author name: علياء محمد حمود الشمري
Supervisor name: محمد عبود محسن
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

دور العوامل الوراثيه والمايكروبيه والمناعيه في عقم الرجال == Role Of Genetic, Microbial And Immunological Factors In Male Infertility

Author name: علي حسين محمد المرزوكي
Supervisor name: محمد صبري عبد الرزاق السعيد | محمد عبود محسن
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

دراسة جرثومية ومناعية للمرضى المصابين بخمج البروستات في محافظة ذي قار == Bacteriological And Immunological Study Of The Prostatitis Patients In Thi - Qar Province

Author name: سعد عبد العزيز عطية الشبيب
Supervisor name: عواطف حميد عيسى | محمد عبد كاظم السعدي
General topic: Medicine
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

التوصيف الجزيئي لبعض عوامل الضراوة للعينات السريرية لبكتريا المسبحيات المعوية Enterococcus faecalis == Molecular Characterization Of Some Virulence Factors Of Clinical Isolates Of Enterococcus Faecalis

Author name: سارة عادل عبيد السعدي
Supervisor name: محمد صبري عبد الرزاق السعيد | جواد كاظم طراد
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:

عزل وتوصيف المسبحيات المعوية المقاومة للفانكومايسين والمعزولة من المجاري البولية للمرضى الراقدين في مستشفيات مدينة الحلة == Isolation And Characterization Of Vancomycin - Resistant Enterococci Isolated From Urinary Tract Of Hospitalized Patients In Hilla City

Author name: زينب عادل غني جابك
Supervisor name: علاء هاني حسن الجراخ | محمد عبد كاظم السعدي
General topic: Medicine
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
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