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التقييم الجزيئي لعوامل الخطورة الوراثية لامراض القلب والاوعية الدموية لعينة من المرضى العراقيين المصابين بنقص التروية القلبية الحاد Molecular Assessment of Cardiovascular Genetic Risk Factors among a Sample of Iraqi Patients with Ischemic Heart Diseases

اسم المؤلف: وسام جاسم محمد
اسم المشرف: بسام موسى صادق الموسوي
الموضوع العام: الطب
السنة: 2017
الموضوع الدقيق: الامراض - الوراثة
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: Ischemic heart disease (IHD) is a major cause of morbidity and mortality worldwide; its incidence is increasing in developing countries. It is estimated that 17.5 million individuals die from CVD each year, accounting for 31% of all deaths worldwide; more than 75% of these deaths occur in low to middle income population. Understanding the pathogenesis of IHD has been modified over the years and many new genetic risk factors have been recognized. Attention is now focused towards understanding the genetic basis of IHD. Enormous effort has been invested in understanding the genes and specific DNA sequence variations responsible for this heritability and genetic polymorphisms might be risk factors that predispose to IHD.Aim of Study : To analyze the genetic risk factors among Iraqi patients with acute IHD and to determine the frequency of each type of mutation / polymorphism.Patients, Materials & Methods : This is a cross sectional study that recruited 56 patients admitted to the Cardiac Care Unit (CCU) of Ibn Al - Nafees Teaching Hospital with a clinical diagnosis of acute ischemic heart disease (myocardial infarction and unstable angina) during a two - month period between December 8th, 2015 and February 8th, 2016. All cases <50 years with acute MI or angina were included, while those >50 years and those with documented hyperlipidemia were excluded.Demographic and clinical data of the enrolled patients were reported. Two - three ml of peripheral blood samples were aspirated from all recruited patients and collected in K2EDTA tube to be store at - 20oC for further DNA analysis. Molecular analysis to detect 12 commonIIImutations/ polymorphisms, namely : FV G1691A (Leiden), FV H1299R (R2), Prothrombin C20210A, Factor Xlll V34L, β - Fibrinogen - 455 G - A, PAI - 1 4G/5G, GPllla L33P (HPA - 1), MTHFR C677T, MTHFR A1298C, ACE l/D, Apo B R3500Q, and Apo E2/E3/E4 was performed by PCR amplification using biotinylated primers and hybridization of amplification products to a test strip containing allele - specific oligonucleotide probes immobilized as an array of parallel lines. The bound biotinylated sequences were detected using streptavidin - alkaline phosphatase and color substrates according to the manufacturers’ instructions.Results : The age range of patients was 18 - 50 years, with a mean ±SD of 40±7 years. The vast majority of enrolled cases were males (54/56 (96.4%). The traditional risk factors were frequently encountered in the current study (hypertension 21.4%, diabetes 26.8%, smoking 75%, family history of IHD 48.2%, and previous attack of ischemia 23.2%). Serum troponin was positive in 72.2% of cases. The study found that the genotype frequencies of 12 genetic mutations / polymorphisms were as follows :  MTHFR A1298C and C677T were the highest reported mutations among the study group (62.5%) and (50%) respectively, followed by β - fibrinogen gene mutation detected in (46.5%), and PAI - 1 4G/5G polymorphism which was detected in (75%) of patients, while PAI - 1 4G/4G was detected in (16.1%) of patients. Homozygous ACE D/D polymorphism was present in 35.7% in our cases and heterozygous HPA - 1(a/b) polymorphisms was present in 28.6%. The E4 allele of Apo E gene was present in 7.1% of the studied cases.IV Heterozygous factor XIII (FXIII) V34L variant was detected in 21.4% patients, while homozygous state was detected in 3.6% patients, i.e. 25% of selected cases had Leu allele,  Heterozygous FV R2 was detected in 12.5%, and factor V Leiden mutation was detected in 1.8%, while no abnormal homozygous alleles were detected.  Prothrombin G20210A mutation were detected in 1(1.8%) patient. Neither heterozygous nor homozygous states for the mutant Apo B allele were detected in this study. The study showed no statistically significant difference between age group I (<40 years) and age group II (40 - 50 years), but the study showed higher frequency for some genes like PAI - 1(4G) and Apo E4 alleles in group I than group II (100% versus 85.3%) and (13.6% versus 2.9%) respectively, while HPA - 1 (a/b) polymorphism was higher frequent in group II than group I (35.3% versus18.2%).Subgroup analysis of the studied traditional risk factors (hypertension, diabetes mellitus, smoking, family history of ischemic heart disease) showed that β - Fibrinogen mutation had higher frequency in smoker patients than nonsmokers (50% versus 35.71%), the D allele of ACE gene was more frequent in hypertensive than in non - hypertensive patients (91.7% versus 79.5%), and higher frequency of HPA - 1b allele in diabetic than non - diabetic patients 46.7% versus 22%).Genetic risk score (0 - 16) was established according to the number of risky alleles detected in each case; the results showed that all patients had at least 2 genetic risk factors and none had more than 8; the study also showed that patients with 4 or more risky genes represented 82.14% of the studied patients, and that the risk of IHD increases in those who carry 4 or more genetic risk factors when associated with at least one traditional risk factor.

تقييم الطفرات الوراثية ل BRAF, IDH1 وفقدان 1p/19q في الاورام الدبقية للمرضى القراقيين : دراسة نسيجية مناعية كيميائية مع التهجين الموضعي المتفلور Assessment of BRAF, IDH1 mutations and 1p/19q loss in Gliomas in Iraqi patients. Immunohistochemical and Fluorescence in Situ Hybridization study

اسم المؤلف: زهراء مروان شعبان العمر
اسم المشرف: سالم رشيد حمودي العبيدي
الموضوع العام: الطب
السنة: 2017
الموضوع الدقيق: الامراض - الوراثة
الدرجة: دكتوراه
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: Background : - Gliomas account for almost 80% of primary malignant brain tumors, so, they considered the most common primary malignant brain tumors in adults. The major types of glial tumors are astrocytomas, oligodendrogliomas, and ependymomas. Isocitrate dehydrogenases 1, BRAFV600E and 1p/19q co - deletion are important molecular markers nowadays for diagnosis and prognosis of gliomas. Isocitrate dehydrogenase mutation might be encounter in the low - grade glioma, occurs in early stages of development and directs the progression of the tumor to a higher grade. BRAFV600E is a point mutation, resulting in a valine to glutamic acid substitution at position 600 and this mutation occurs more in pediatric gliomas but less frequent in adult gliomas. Co - deletion of 1p/19q results from a non - balanced translocation t (1 : 19) (q10 : p10) with subsequent loss of one of the derivative chromosomes and highly associated with oligodendroglial tumors morphology and improved survival.Aim of the study : - To assess the frequency of Isocitrate dehydrogenases 1 and BRAF mutations in Iraqi patients with gliomas by immunohistochemical study, to correlate their immunoreactivity with some clinicopathological parameters. To validate frequency of 1p/19q loss by Fluorescence in Situ Hybridization study and correlate the deletion with the some parameters.Patients and Methods : Formalin fixed, paraffin embedded tumor tissue from 66 patients with different grades of intracranial gliomas of both gender and all age groups in Baghdad city were collected in this retrospective selective study. Ten normal brain tissue samples in form of paraffin blocks took from forensic medicine unit. New technique used, that is manual tissue microarray, in which twenty - four small cores (each measure 2mm) of represented tissue made, then cut by microtome. IHC detection of Isocitrate dehydrogenases 1 and BRAFV600E antibodies did by Dako autostainer link 48. Assessment of co - deletion of 1p/19qAbstractIII

طيف وتردد طفرات الجين K - ras عند المرضى العراقيين المصابين بسرطان القولون والمستقيم المفرق Spectrum and Frequency of K - ras Mutations among Iraqi Patients with Sporadic Colorectal Cancer

اسم المؤلف: شيماء خالد شاكر احمد
اسم المشرف: بسام موسى صادق الموسوي
الموضوع العام: الطب
السنة: 2017
الموضوع الدقيق: الامراض - الوراثة
الدرجة: ماجستير
اللغة: الانكليزية
مكان الجامعة: بغداد
الصفحات الاولى:
المستخلص: Colorectal cancer (CRC) is a serious health problem and is one of the most common cancers in the world. The majority of CRCs are sporadic; several genes have been implicated in colorectal carcinogenesis.Kirsten rat sarcoma viral oncogene homolog (K - ras) is a protooncogene and is one of the important genes responsible for sporadic colorectal carcinogenesis. It is involved in G protein - mediated signal transduction. It has a constitutive guanosine triphosphatase (GTPase) activity, which is lost when the gene is mutated. Analysis of K - ras mutation has important therapeutic impact being one of the most important predictors of resistance to targeted therapy using Epidermal Growth factor receptor (EGFR) tyrosine kinase inhibitors (cetuximab and panitumumab) in addition to its prognostic significance. Aim of study : To determine the frequency and spectrum of K - ras mutations among Iraqi patients with sporadic CRC. Patients, Materials and Methods : This is a retrospective study that included 35 surgically resected cases with sporadic CRC from the Gastroenterology and Hepatology Teaching Hospital / Medical City Complex - Baghdad during the period extending from January 1st, 2014 till December 31st, 2015. Patients’ demographic characteristics as well as tumor characteristics were studied. Samples of DNA were extracted from formalin - fixed paraffin embedded blocks (FFPE) using the QIAamp DNA FFPE Tissue Kit by QIAGEN / Germany. The specified DNA fragment was amplified by a conventional thermocycler (PCR) using specific biotinylated primers followed by hybridization of the amplification products to a test strip containing allele - specific oligonucleotide probes immobilized as an array of parallel lines. The bound biotinylated sequences are detected using streptavidin - alkaline phosphatase and color substrates according to the manufacturers’ instructions.Results : The age of the 35 enrolled cases ranged between (20 - 70) years with a mean (±SD) of 52.7±13.5 years and a median of 55 years; 27(77%) of them were ≥45 years of age and 8(23%) were <45 years of age. Out of the 35 enrolled patients 12 (34%) were males and 23(66%) were females; the male : female ratio was 1 : 2.The most common histological type was the non - mucinous adenocarcinoma constituting 30 (85.7%), with a moderately differentiated grade II histological pattern 29 (82.9%); stage III was the most common tumor stage 13 (37.1%) with predominance of left colonic tumors 20 (57%);15(42.9%) of CRC patients presented with positive regional lymph node involvement.K - ras mutations were detected in 13 (37%) patients; the remaining 22 (63%) show wild - type K - ras. Ten (71.4%) of these mutations were in codon 12 while 4(28.6%) were in codon 13. No mutation was detected in other codons (61,117,146).A total of 14 mutations were detected in the tumors of those 13 patients; 12/13 tumors had single mutations, and only 1/13 had double mutations (in codon 12 and codon 13 simultaneously).The most frequently encountered mutations were the G>T transversions 9 (64.4%). The most frequent mutation constituting 8 (57.2%) was GGT>TGT (GLY>CYS) at codon 12.There were no statistically significant associations of clinicopathological characteristics with K - ras mutation status.Conclusions :  K - ras mutations rate lies within worldwide reports, and lie in the middle between Asian and European figures. Most CRC tumors carry codon 12 K - ras mutations and thus they have a risk of poorer prognosis and response to therapy. Gly12Cys and Gly13Asp predominate over other types of amino acid substitutions, and carry a poorer prognosis. PCR detection of K - ras mutations is preferable to IHC techniques especially so when using anti - EGFR for CRC treatment.