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دراسة مقارنة بين تاثير سترات الكلوميفين وسترات التاموكسيفين على بعض معايير نطف الفئران == Comparative Study On The Effects of Clomiphene Citrate And Tamoxiphene Citrate On Some Sperm Parameters In Mice

Author name: رائد عبد الاله عباس
Supervisor name: محمد باقر محمد رشاد فخر الدين | محمد عوده سلمان
General topic: Biology
Specific topic: Zoology - Embryology
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: يعد العقم واحدة من المشاكل الاجتماعية المهمة في معظم انحاء العالم.استنادا الى الاحصائيات الحالية حوالي 15% من المتزوجين يواجهون العقم. يؤدي تقييم السائل المنوي غير الطبيعي للاستروجينات الى تشخيص قلة اعداد النطف ونشاطها وشكلها الطبيعي ومن ناحية اخرى تؤثر | Infertility is one of the most critical social problems in the all of population world. According to the current statistics, about 15% of married couples face with infertility. Assessment of abnormal semen parameters leads to diagnosis of oligoasthenoteratozoospermia, and in others, it leads to isolated abnormalities of sperm concentration, motility, and morphology, due to the lack of differentiable or correctable etiology, Both clomiphene citrate and tamoxiphene citrate, as an anti - estrogen, is the most common prescribed medication for male infertility. In humans, ant estrogens interfere with the normal negative feedback of sex steroids at the hypothalamus and pituitary, thereby increasing endogenous gonadotropin releasing hormone (GnRH) secretion from the hypothalamus and follicle stimulating hormone (FSH) and luteinizing hormone (LH) secretion directly from the pituitary. Objective : The objective of this study was to investigate the effect of clomiphene citrate (CC) and tamoxiphene citrate (TC) administered to male mice on quality of sperm parameters.Materials and Methods : Ninety six male mice were divided into two major groups, and every one of these groups was subdivided into three minor groups involving control and two treated groups. In the CC study, 48 mice were administrated orally 0, 0.0125 mg and 0.025 mg as control (G 1), low dose (G 2) and high dose (G 3) for 42 days. While, in the TC study, 48 mice were administrated orally 0, 0.01 mg and 0.02 mg as control (G 1), low dose (G 2) and high dose (G 3) for 42 days. Then, the male mice were sacrificed, both vas deferens were collected and assessment sperm parameters involving sperm concentration, sperm motility and activity, and normal sperm morphology. Results : The results of present study appeared that the use high dose of CC or TC significantly increment (P<0.05) sperm concentration as compared to control groups. However, use high dose of CC significantly increment (P<0.05) percentages of sperm motility and normal sperm morphology. Meanwhile, the percentage of progressive sperm motility was increased significantly (P< 0.05) when low CC dose administered as compared to control and high CC dose groups. In this study, percentages of sperm motility, progressive sperm motility and normal sperm morphology showed best elevation when used low TC dose as compared to both control and high TC dose groups. High TC dose causes significant increment (P<0.05) in the percentage of sperm agglutination when compared to control and low TC dose groups.Conclusions : Based on the results of this study, it can be concluded that the administration of high dose of either CC or TC increases sperm concentration, while administration of low dose of either CC or TC enhances progressive sperm motility.

تقييم مستوى هرموني الجوع والسمنة لدى مرضى فرط ضغط الدم في محافظة النجف الاشرف == Assessment of Obestatin And Ghrelin Levels In Hypertensive Patients In Al - Najaf Al - Ashraf Governorate

Author name: زهراء محمد فاخر عطية النفاخ
Supervisor name: ارشد نوري غني الدجيلي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: تهدف هذه الدراسة الى تقييم مستوى الهرمونات المكتشفة حديثا هرمون الجوع ?هرمون السمنةونسبة هرمون الجوع الى هرمون السمنة في مرضى ضغط الدم لمعرفة العلاقة المحتملة بين مستوى هرمون جريلين, اوبستاتين مع عوامل مختلفة بما في ذلك الضغط الانقباضي, الضغط الانبساطي و| The present study aims to assess the newly discovered ghrelin, obestatin hormones levels and ghrelin to obestatin ratio in patients with hypertension disease and to find out a possible relationship between obestatin, ghrelin level with different criteria including, systolic blood pressure, diastolic blood pressure and body mass index (BMI) in patients with Hypertension disease and compared with healthy controls as a tool for monitoring and even possibly prediction or diagnosis of these diseases. 69patients are diagnosed with hypertension disease (33males and 36 females) and 20 control healthy subjects (10 males and 10 females) having no history of diabetes mellitus, renal failure and other disease enrolled in this study.The patients are selected from both sexes (males and females) their ages ranged between (40 - 70) years old. Patients with hypertension disease are recruited from AL - sader teaching city in AL - Najaf AL - Ashraf Governorate during the period from September to December 2013. Results of the present study in general revealed that there is high obestatin level in patients with hypertension diseases in a comparison with control group, low ghrelin level in patients with hypertension disease comparing with control group and ratio of ghrelin to obestatin ratio was decreased in patients undergo from hypertension when compared with control group.The result showed a positive correlation among obestatin, systolic pressure, diastolic pressure and body mass index (BMI) with negative correlation between gherlin, systolic pressure, diastolic pressure, and body mass index (BMI) and negative correlation between ghrelin to obestatin ratio with blood pressure. The present study concluded that ghrelin to obestatin ratio might play role in blood pressure regulation

التحري عن بعـض عوامل الفوعة لبكتريا المكورات Enterococci المعوية المقاومة للمضاد الحيوي الفانكومايسين == Detection of Some Virulence Factors of Vancomycin - Resistant Enterococci

Author name: حيدر صباح كاظم الخماسي
Supervisor name: مي طالب فليح
General topic: Biology
Specific topic: Microbiology
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: تم الحصول على (20) عزله لبكتريا المكورات المعوية البرازية من اصل (135) عينة جمعت من مستشفى مدينة الطب ومستشفى الكندي وهي كما ياتي (15 عينة الادرار, 60 عينة دم, 50 عينة من قنوات الجذر للاسنان و10 عينة من الحروق).اختبرت الحساسية لهذه العزلات العشرون لـ 11 | Clinical sampling was carried out between September and December 2013, Twenty Enterococcus faecalis isolates were obtained from 135 clinical specimens. The samples included of patients in Medical City Hospital and Al - kindy Hospital (15 urine, 60 blood, 50 root canal and 10 wound swabs) Antibiotics susceptibility test for 20 isolates was done against 11 antibiotics, it was revealed that the isolates showed multi drug resistance were (18) isolates. The vancomycin susceptibility was determined by the minimum inhibitory concentration (MIC). Resistant and intermediate resistant to vancomycin was distributed among isolates at a ratio of 65% and 20%, respectively. Imipenem was found to be the most bactericidal agent against E. faecalis isolates E. faecalis virulence factors were detected phenotypically, The results showed that all isolates (100%) were hemolysin, protease and aggregation substance producer. 30% of isolates showed an ability to produce gelatinase. While (40.7%) of the isolates were a lipase producer. The results of the tube method showed that all E. faecalis isolates (100%) were slime layer and biofilm producer but the amount of adherent layer were different among the isolates ranged from strong to moderate and weak.The extracted DNA was subjected to Polymerase chain reaction (PCR) technique in a monoplex pattern to amplify the virulence factor Enterococcal Surface Protein (esp) which is chromosomal, results of this investigation showed that 20 (100%) E. faecalis isolates gave the amplicon size 933 base pair for the esp gene.The genetic determinants of Vancomycin - Resistant vanA and vanB genes were amplified using monoplex and multiplex PCR techniques in order to identify vancomycin resistant (van+) and sensitive (lacking van) among (13) E. faecalis. The vanA, vanB genes were detected in 11 and 4 E. faecalis isolates, respectively. The results of monoplex and multiplex PCR revealed that the molecular weight of vanA and vanB genes were 550 and nearly 600 bp, respectively. The results revealed that the vanA and vanB amplicons have a genetic variation in their molecular weight during the electrophoresis of PCR product.

التحري عن الطفرات في جيني CNTNAP2 وIL1RAPL1 في مرضى التوحد == Mutation Screening of CNTNAP2 And IL1RAPL1 Genes In Autistic Patients

Author name: بشير كاظم خرميط
Supervisor name: عبد الكريم عبد الرزاق القزاز
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: ان اضطرابات طيف التوحد هي مجموعة من الظروف التي تتميز بضعف في التواصل الاجتماعي ونمطية في السلوك. يختلف الاشخاص المتوحدين اختلافا كبيرا في التطور المعرفي والتي يمكن ان تتراوح من فوق المتوسط الى العجز في التفكير. رغم ان اضطرابات طيف التوحد هي تورث بشكل كبي | The autism spectrum disorders (ASDs) are a group of conditions characterized by impairments in reciprocal social interaction and communication, and the presence of restricted and repetitive behaviors. Individuals with an ASD vary greatly in cognitive development, which can range from above average to intellectual disability (ID). While ASDs are known to be highly heritable (~90%), the underlying genetic determinants are still largely unknown. The research studies correlate between Contactin - associated Protein - Like 2 (CNTNAP2), Interleukin - 1 Receptor Accessory Protein - Like1 (IL1RAPL1) genes and ASDs. This study includes forty autistic patients and forty non autistic children as control groups (twenty unaffected sibling and twenty unrelated children). The age of autistic and non autistic children was ranged from 3 to 10 years. Blood samples of autistic patients were collected from Rahman specialist centre for the care and service autistic children in Baghdad. DNA was extracted from blood samples for molecular detection of CNTNAP2 and IL1RAPL1 mutations associated with ASDs by the use Polymerase Chain Reaction (PCR) technique and sequence analysis. PCR reaction was performed to amplify exons (14, 17 and 20) of CNTNAP2 gene that encode to CASPR2, a member of the neurexin family which functions in the nervous system as cell adhesion molecules and receptors. The PCR results revealed that identical bands related to the CNTNAP2 exons were present in all samples. Therefore, five samples (four from autistic patients and one from control sibling) were selected for genotype analysis of CNTNAP2 exons (14, 17 and 20) by direct sequencing. Genotype analysis revealed that there were no any variants in CNTNAP2 exons, but it shows that four different mutations were identified in non coding region (introns) of the CNTNAP2 gene. These mutations were seen only in autistic patients but absent in control sample. Three of these mutations are single nucleotide polymorphisms (SNPs) (rs3779031 A/G in 2118282 position, rs3779032 A/C in 2118436 position and T/G in 2117905 position). The other mutations were deletion in one nucleotide (Del A/ - in 2117901 position). SNP rs3779032 A/C are located at intron 21 while other mutations are located at intron 19. The current study showed that two common SNPs (rs3779031 and rs3779032) in CNTNAP2 were strongly associated with ASDs, where the frequencies of these SNPs were relatively high. SNP rs3779031 identified in two autistic patients while rs3779032 identified in three autistic patients from four unrelated families with ASDs. PCR reaction also was performed to amplify exons (3, 4, 5, 6, 7, 8 and 9) of IL1RAPL1, a gene implicated in calcium - regulated vesicle release and dendrite differentiation. The PCR results show a large intrgenic deletion (Deletion of exons 3 and 4) in six autistic patients, two of these patients were twin. This deletion may be incomplete penetrance due to phenotypic heterogeneity of these patients. This study provides evidence of the role of genetic factors in the etiology of ASD and the important CNTNAP2 and IL1RAPL1 genes mutation of pathogencity ASDs.

الازالة الحيوية لليورانيوم والسيزيوم من الترب الملوثة بواسطة نبات الشعير == Phytoextraction of Uranium And Cesium From Contaminated Soil By Hordeum Vulgare Plants

Author name: سيف صبار كامل
Supervisor name: ناظم حسن حيدر
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: Phytoremediation is defined as the use of green plants to remove pollutants from the environment or to render them harmless. Phytoremediation process can be classified based on the contaminant fate as; Phytoextraction, Phytotransformation, Phytostabilization, Phytodegradation, Rhizofiltration. In this work, the phytoextraction process was employed. A piece of land in the Botanical Garden at the University of Baghdad with an area of 25 m2 was prepared to plant the barley plant. Then, seeds of barley of type "Samir", which is an Iraqi kind that suitable for cultivation in Iraq, have been seeded. For U and Cs experiments, soil was mixed with a limited quantity of each U isotope for three different concentrations; 152 Bq/kg, 95 Bq/kg and 81 Bq/kg and for Cs106.5 Bq/kg, 79 Bq/kg and51 Bq/kg. For NPK and Urea experiments, different concentrations were tested to establish the requirements of these experiments. The LB4100 - W counting system includes the most complete data analysis software package was used to measure and calculate the alpha and beta concentrations and subsequently the overall activity concentration of any studied sample. Samples were prepared by following the Indian Standard method. For U, the experiment achieved by dividing it into four groups that differ in the spent time of agriculture in contaminated and clean (reference) soils. The results illustrated that the phytoextracted of U with planted period in contaminated soil, which were 31, 50, 63, 34 days, were 36.22, 54.84, 76.24, and 66.30 Bq/kgm, respectively. However, the 4th group differs comparing with other groups in the spent time of cleaned soil, which was 73 days. For Cs experiments, the work grouped similar to U experiment. The results of Cs phytoextraction showed that the absorbed Cs were 54.34, 100.69 and 109.07 for spent times in contaminated soil; 23, 43 and 57 respectively. Furthermore, barley plant has significant ability to phytoextract U and good ability to phytoextract Cs for all the three different concentrations. Besides, the results illustrated that the increase in the planted time in contaminated soils led to increase the quantity of phytoextracted isotopes. The results of adding K fertilizer showed a decrease in the ability of barley to absorb U, while the addition of urea enhanced the ability of barley. Finally, the following conclusion can be drawn from the present study that : barley is a good tool to phytoextract Cs rather than U and the use of urea fertilizer is suitable for enhanced the phytoextraction process.

الكشف الجزيئي عن التغيرات في جين MSX1 المسؤول عن حالة فقدان الاسنان باستخدام سلسة تفاعل البلمرة في عينة من المرضى العراقيين == Molecular Detection of Msx1 Gene Changes Responsible For Causing Hypodontia Using Polymerase Chain Reaction (PCR) In Sample of Iraqi Patients

Author name: اماني احسان الصقر
Supervisor name: اسماعيل حسين عزيز | اكرم فيصل الحويزي
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: مصطلح الهايبودونشيا يعني نقص الاسنان الخلقي ويعد من اكثر التشوهات الفموية حدوثا لدى الانسان. مائة وخمسة وسبعون من مرضى نقص الاسنان الخلقي سجلوا في هذه الدراسة لديهم على الاقل سن واحد مفقود ولايزيد عدد الاسنان المفقودة عن ستة، قصدوعلاج الاسنان التقويمي في | Hypodontia means congenitally missing teeth, and considers as one of the most common oral alteration in human. One hundred and seventy five of hypodontia patients were matriculated in this study, having at least one missing tooth and no more than 6 missing teeth, seeking orthodontic treatment, who attended Al - Huwaizi Dental Center at AL - Harethia District - Baghdad, and control group consists of twenty five apparently healthy subjects (15 females, and 10 males). The age of both groups ranged from14 to 65 year. Buccal swabs were collected (for molecular study) from 25 of those patients who attended the clinic in a period between the beginnings of October 2013 to the end of April 2014, and from control group. Information were taken from the subjects under study according to a questionnaire that includes, name, gender, age, family and medical history, and the place of residence. Hypodontia was diagnosed according to the history of patients, clinical examination, orthopantomogram (OPG), and dental casts. The result of demographic study of hypodontia patients revealed that hypodontia was found in 129 of females which were more than that in males(46) with significant difference (p < 0.05). The ratio of females to males was 2.8 : 1. The missing teeth in hypodontia patients were found in right, left or both sides. The number of hypodontia patients, who had missing teeth in the right side were 37, in the left side were 48, while in both sides reached to 90 with non - significant differences and the results clarified that the missing teeth in anterior region found in 81 patients were higher than that in posterior region (63) while the least in both regions which recorded in 31 patient. It was found that hypodontia was more common in the maxilla (73) (upper jaw) than that in mandible (65) (lower jaw), whereas 37 suffering from missing teeth in both jaws, with non - significant differences. Present results showed that the maxillary lateral incisor (LI) was the most frequently missing tooth (124), the second most missing tooth was mandibular second premolar (PM2) (101) followed by lower central incisor (CI) (33), the maxillary second premolar(PM2) (27) whereas the lowest frequently missing teeth were canine (C), and the first premolar (PM1). The molecular part of present study used polymerease chain reaction (PCR) technique for amplification of DNA samples extracted from buccal swabs of twenty five hypodontia patients and control group.Four pairs of primers X1.1F, X1.3R; X1.4F, X1.4R; X2.1F, X2.3R, and X2.3F, X2.4R of the MSX1 gene, obtained from Bioneer Company (Korea), were used to amplify overlapping regions of the 2 exons of the MXS1 gene. The first pair of primers was used to amplify fragment with product size of 421 bp., while the second, third, and forth pairs of primers were used to amplify fragments with product size of 152 bp., 493 bp., and 264 bp., respectively. The outcome of MSX1 gene amplification showed that four patients with the first pair of primers and nineteen patient with the third pair of primers gave negative result (no bands) which differed from the result of the other patients and control. The disappearance of bands may be attributed to MSX1 microdeletion in those patients.The sequencing of MSX1 gene for the PCR product of second, third and fourth pairs of primer showed no genetic mutation, while the PCR product of the first pair of primers reveled nine missense and two silent mutations.It was concluded that hypodontia occurre frequently in Iraqi population and its occurrence in females was higher than that in males, and the gene MSX1 is responsible for many teeth missing in hypodontia patients.

التحري عن طفرة JAK2V617F والمستويات المصلية لانزيمي الفوسفتيز القلوي واللاكتيت ديهايدروجنيز في مرضى ابيضاض الدم النخاعي المزمن == Detection of Jak2V617F Mutation And Serum Levels of Alkaline Phosphatase And Lactate Dehydrogenase In Chronic Myelogenous Leukemia

Author name: استبرق اكرم بيرام الحسيني
Supervisor name: عصام فاضل علوان الجمیلي
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: يعد مرض ابيضاض الدم النخاعي المزمن (CML) من الاورام النخاعية التكاثرية، وينشا نتيجة تكون جين Bcr - Abl (الذي يسمى كروموسوم فيلادلفيا) داخل الخلايا الجذعية المكونة للدم. يؤدي هذا الشذوذ الجيني الى تفعيل متواصل لانزيم التايروسين كاينيز وبالتالي نمو وتكاثر غ | Chronic myelogenous leukemia (CML) is a myeloproliferative neoplasm arises from Bcr - Abl gene translocation (called Ph chromosome) in hematopoietic stem cells (HSCs). This genetic abnormality results in constitutive activation of tyrosine kinase and subsequent uncontrol growth and multiplication of granulocytes. The cornerstone in treatment of CML are tyrosine kinase inhibitors, of which imatinib is the most effectively used. JAK2V617F mutation is an acquired single nucleotide polymorphism (SNP) occurs in JAK2 gene and is associated with many hematological malignancy other than CML. It was thought that the two genetic abnormalities (Bcr - Abl and JAK2V617F) occur mutually; however, growing body of evidences suggested the reverse. This study aimed to investigate the prevalence of JAK2V617F mutation associated with serum levels of alkaline phophatase (ALP) and lactate dehydrogenase (LDH) in Ph+ CML Iraqi patients treated with imatinib. A total of 43 Ph+ CML patients (25 males and 18 females, age range 16 - 80 years) who attend Iraqi National Center of Hematology for Research and Treatment/Baghdad were enrolled in this study. Each patient has been received at least six month therapy with imatinib. A consent form involving age, gender, height, weight, smoking status, residency and first family relative history of leukemia was obtained from each patient. Besides, blood samples were collected, from which the granulocytes were separated and then DNA was extracted using a ready kit. Two assays were used for detection of JAK2V617F mutation; real time polymerase chain reaction (qPCR) using specific primers and probe, and allele specific PCR (AS - PCR) using specific primers. Total white blood corpuscles (WBC) as well as serum levels of ALP and LDH were measured. qPCR assay revealed 5 patients out of 43 (11.62%) were heterozygous for the muatant allele of JAK2V617F mutation (genotype GT). The concentration of this allele ranged from 0.01% to 0.12%. None of blood sample gave positive result for AS - PCR assay. From the all risk factors, only gender had significant association with the incidence of JAK2V617F mutation. Average total WBC count, and serum levels of ALP and LDH were higher in JAK2V617F - positive patients (9042±1512.55, 146.05±8.028 IU/L and 204±10.85 IU/L respectively) than that of JAK2V617F - negative patients (6039±1772.239, 64.45±40.15 IU/L and 178.33±13.693 IU/L respectively) with significant differences. These results indicate that JAK2V617F mutation can occur simultaneously with Ph chromosome in CML patients, and qPCR is a highly sensitive method for the detection of this mutation. Furthermore, serum activity of ALP can be used as an indicator for the presence of JAK2V617F mutation in CML patients.

دراسة بعض الجينات المشفرة لعوامل الضراوة لبكتريا Acinetobacter baumannii المعرزلة من العينات السريرية == Study of Some Virulence Factors Encoded Genes of Acinetobacter Baumannii Isolated From Clinical Samples

Author name: عصام محمد طاهر الخويلدي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة على300عينة سريريه مختلفة حصل عليها من الجروح والادرار والقشع والدم خلال الفترة من ايلول 2013 الى شباط 2014.منها 102(34%) لا يوجد نمو بينما 198(66%) نمت على وسط زرعي متخصص. شخصت عشرة عزلات من Acinetobacter baumannii من مائة وثمانية وتسعون من | Out of 300 various clinical samples obtained from wounds, urine, sputum, blood through the period from September, 2013 to February, 2014 of which 102 samples(34%) yielded no growth while 198 samples (66%) were positive growth on selective media. Ten isolates of Acinetobacter baumannii were identified among one hundred ninety eight of Gram - negative bacteria grown on MacConkey agar that was isolated from different clinical specimens in Al - Najaf Al - Ashraf province hospitals. A.baumannii identification depends on morphological, microscopic examination and biochemical tests as the initial identification. Also it was identified by both blood agar containing D - glucose and growth at 44?C. The final identification was performed by Api20E to confirm from all A.baumannii isolates..Distribution of A.baumannii among various clinical specimens where 4 isolates (40%) of wounds specimens and 3(30%) of urine specimens, followed by 2 isolates(20%) and one isolate(10%) of sputum and blood specimens respectively.The virulence factors of A.baumannii were studied, including bioflim formation, adhesion, capsule, hemolysin and protease, beta _lactamases production. The results indicate that 60% of A.baumannii formed the biofilm, 90% of isolates have ability to adhesion to epithelial cell and 70% of isolates was the capsule production, 80% of A.baumannii isolates able to produces beta _lactamases while all A.baumannii isolates cannot produce of both hemolysin and protease.The results showed variation in the resistance of these bacteria to antibiotics where all A.baumannii isolates 100% resistance to each of cefotaxime, Ceftazidime, ceftriaxon, piperacillin while 90% resistance toticarcillin - clavulanic acid, 50% resistance to tobramycin and 30% to ciprofloxacin. 20% of all isolates showed resistance to each of amikacin, Doxicycline, imipenem, meropenem.By using Combing Disc Test(CDT) method to detect Extended Spectrum ? - lactamases(ESBLs) and metallo ? - lactamases (MBLs) production.Where 90% of A.baumannii showed ability to produce of ESBLs while only 20% showed ability to MBLs production.The genotypic method was used to detect csuE, ompA genes and also some of ? - lactamases genes such as blaTEM, blaSHV, blaNDM - 1 by using Polymerase Chain Reaction technique.The results showed that 60% of all A.baumannii isolates produce phenotypic biofilm and 30% carry csuE gene of all isolates while 50% when compared with isolates that show phenotypic formation of biofilm and the distribution of gene among all clinical specimens where 50 %, 33.3% and 25% in sputum, urine and wounds specimens respectively while not present in blood specimens. The results showed that 40% of all A.baumannii isolates carry ompA gene while 44.4% when compared with isolates that show phenotypic adhesion and the distribution of gene among all clinical specimens where 100%, 50 %, 33.3% and 25% in blood sputum, urine and wounds specimens respectively.The outcomes showed 70 % of A.baumannii isolates carry blaTEM gene and 40% of A.baumannii isolates carry blaSHV gene while none carry of blaNDM - 1gene. When compared with phenotypic results of ESBLs, MBLs.The results of blaTEM, blaSHV genes become 77.7% and 44.4% respectively.

الدور الوقائي لبكتريا البفديس ضد خمج الفئران ببكتريا الاشيريكيا القولونية المنتجة لذيفان الشيكا == The Protective Role of Probiotic Bifidobacterium Against Mice Infection With Shiga Toxin Producing E.Coli O157 : H7

Author name: سمر مصطفى محمد
Supervisor name: شادان عباس الوانداوي
General topic: Biology
Specific topic: Microbiology
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: Six Bifidobacterum isolates were isolated from fully breast - fed healthy infant faeces on reduced de Man Rogosa and sharp medium (MRS - C). Isolates identified on the basis of, colonial and microscopical properties, biochemical tests, and fructose - 6 - phosphate phosphoketolase enzyme (F6PPK) activity assay in cellular extracts. Carbohydrates fermentation profile used for identification of isolates to species level. All bacterial isolates diagnosed as Bifidobacterium genus where in this study B. adolescntis was the predominant species (50%), (B4, B5 and B6), followed by B. breve (B3), B. longum (B1) and B. dentium (B2) each one represent 16.67%.Bifidobacterium isolates were screened for their antagonistic effects against test organism, clinical isolate of shiga toxin producing E.coli O157 : H7 (STEC), using agar - well diffusion method. The isolates B3 and B6 showed clear inhibitory actions, 22 mm and 15 mm diameter of inhibitions zones, respectively. The rest of the tested isolates did not pronounce any inhibitory activity.B. breve in vivo antagonistic behavior and the possible protective effects against STEC was evaluated, using streptomycin treated murine model. Murine intestines was stably colonized orally with B. breve for 14 days, in conjunction mice were challenged orally with STEC, 103 CFU / mouse / day on day 8 of experiment. Bacterteriological analysis of mice faeces at time intervals, was indicated high levels of bacterial colonization were achieved in intestine by B. breve and STEC.Colonization of mice intestine by B. Breve did not inhibited STEC cells from proliferation during infection phase. Hence, the excretion level of STEC in faeces reached to 2.4 x 10 6 CFU/ g of faeces.STEC infected mice showed no severe clinical signs, characterized by hairloss, lethargy, paralysis of fore limbs, and shed of loose faeces. In the B. breve - colonized group, the mentioned clinical signs were almost completely inhibited, except the lethargic of some animals.Immunological studies showed an increase in the levels of sIgA by 2.7 - fold from that of blood IgA in B. breve - colonized mice while, reversed values were recorded in mice infected with STEC, blood IgA level was 1.95 - fold higher than that of sIgA.Histological changes in spleen, liver, kidney, and intestine tissues of mice were studied. The histological sections clarified the protective roles of B.breve, where no effective histological disorders were appeared in B.breve and STEC - colonized mice. In the STEC - infected mice, the pathological abnormalities within the kidney was the predominant, diagnozed as ulcers in the lining membranes, glomerular and tubular epithelium necrosis, without evidence of glomerular thrombi, mild damages was appeared in liver and spleen, and characteristic attaching and effacing (A / E) lesions appeared in the large intestine sections

تاثير مستخلص بذورالحبة السوداء في امراضية طفيلي المتورقة العملاقة Fasciola gigantica خارج وداخل الجسم الحي == Efficiency of Nigella Sativa Seed Extract In Fasciola Gigantica Parasite In Vivo And In Vitro

Author name: شيماء عبد الحسين محمد شلاش
Supervisor name: جاسم حميد رحمة الخزاعي
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة الحالية خلال المدة من شهر تشرين الثاني 2012 ولغاية تشرين الاول 2013لتقييم فعالية المستخلص الكحولي لبذورالحبة السوداء Nigella sativaفي حيوية بيض وبالغات دودة الكبد العملاقة Fasciola gigantica خارج وداخل الجسم الحي. وبواقع ثلاث تراكيـز 20%, 4 | The present study was conducted during the period from November 2012 till October 2013 to evaluate the effectiveness of the alcoholic extract for Nigella sativa seeds on the vitality of eggs and adults liver giant worm Fasciola gigantica In vitro and In vivo in the infected domestic rabbits lepus lepus arabica. Alcoholic extract for Nigella sativa seeds used In vitro at three concentrations 20%, 40%, 60% for each eggs and adults of Fasciola gigantica and In vivo were three doses 200, 400, 600 mg/kg from body weight in the infected rabbits by this parasite. The result of the current study In vitro revealed that the alcoholic extract for Nigella sativa seeds at 60% has been great effects in reducing the percentage of the eggs hatching to 0% and increasing the mortality percentage of the adult worms to 100% when compared with the control groups. So the results of this study showed that there is not significant differences of alcoholic extract of Nigella sativa seeds on the blood components of the healthy rabbits at level P<0.05 while in the infected and treated rabbits there are less significant effect when compared with the infected rabbits. In the infected rabbits showed significant increased in numbers of white blood cells from 5.52*109/L in the negative control to 10.41*109/L in the positive control and significant decreased in numbers of red blood cell from 5.51*1012/L to 4.41*1012/L and haematocrit value from 32.21% to (24.71%) and the amount of hemoglobin from 11.43*gm/dl to 8.53* gm/dl.While the ethanol extract of Nigella sativa seeds reduced the number of WBCs and increased the number of RBCs, PCV and the concentration of hemoglobin. Also the results of the current study In vivo showed that the ability of alcoholic extract of Nigella sativa seeds at dose 600 mg/kg are more effective in reducing the numbers of Fasciola gigantica worms in the infected and treated rabbits when compared with the infected and untreated rabbits. So the total rate number of worms in the positive control 16.7 while 6.4, 2, 0 for doses 200, 400, 600 mg/kg from body weight respectively. Results of histological study in the experimental infected rabbits revealed that the alcoholic extract is very effective for reducing the histopathological changes in the liver, spleen and kidney which caused by the parasite. And the therapeutic efficiency of these extract in dose 600 mg/kg for organs Liver, Spleen, Kidney are 100%. Concluded from the results of this study that the alcoholic extract of Nigella sativa seeds used in treatment the infection of the F.gigantica worm because its therapeutic efficiency and not any side effects to this extract.

تاثير الانزيمين الكلوكواميليز والكلوكوز اوكسيديز في تثبيط بكتريا Streptococcus mutans المسببة لتسوس الاسنان == The Effect of Glucoamylase And Glucose Oxidase On Inhibition of Streptococcus Mutans Causes The Dental Caries

Author name: بيداء عبود حسن الجنابي
Supervisor name: زهرة محسن علي | محمد عبد الله جبر
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: تضمنت الدراسة استخلاص الكلوكواميليز والكلوكوز اوكسيديز من الفطرين Aspergillus niger وPenicillum notatum على التوالي وتنقية وتوصيف الانزيمين لغرض زيادة تركيز بيروكسيد الهيدروجين المحفز لانزيم اللاكتوبيروكسيد الموجود باللعاب على تكوين ايونات الهايبوثايوسيان | This study aims at producing glucoamylase and glucose oxidase from the Aspergillus niger and Penicillium notatum respectively , purifying and characterizing the enzymes to increase H2O2 concentration which induce lactoperoxidase in saliva to the formation of hypothiocyanite ion to inhibite Streptococcus mutans which causes the dental caries. For glucoamylase and glucose oxidase production, the results shown the the highest enzymes production were occurred using the synthetic medium, it gave high titer of glucoamylase and glucose oxidase activity (0.212, 0.605 U/ml) respectively, the optimum incubation period for glucoamylase was occurred after 96 h (0.125 U/ml), while the maximum activity of glucose oxidase was occurred after 72 h (0.662 U/ml), the optimum temperature for enzymes production was occurred in 30°C, (0.257, 0.690 U/ml) respectively, the maximum production of glucoamylase and glucose oxidase were occurred in the pH = 6 (0.174, 0.391 U/ml) respectively, the optimum nitrogen source for enzymes production was yeast extract and potassium nitrate (0.157, 0.571 U/ml) respectively, the optimum carbon source for glucoamylase and glucose oxidase production was starch and glucose (0.167, 0.459 U/ml) respectively. For glucoamylase and glucose oxidase purification, the results found the ammonium sulfate (80 %) was selected as the best ratio for precipitate of glucoamylase , the specific activity reached to (3.626 U/mg) , with a purification fold (1.241) and yield (0.38) % , while the (60 %) was selected as the best ratio for precipitate of glucose oxidase, the specific activity reached to (10.304 U/mg) , with a purification fold (1.219) and yield (0.34) % , two peaks of glucoamylase were appeared in the gel filtration the specific activity of the first form (4.195 U/mg) with purification fold (1.436), while the second (31.214 U/mg) with purification fold (10.689), while one peak of glucose oxidase was appeared in the gel filtration, the specific activity was reached (62.382 U/mg) with purification fold (7.385). For characterization of enzymes, the results reported the highest activity of glucoamylase (Aand B) occurred in pH = 8, 6.5 (0.253U/ml, 0.511 U/ml) respectively , while the maximum activity of glucose oxidase (1.289 U/ml) in pH = 5.5, the optimum temperature of glucoamylase (Aand B) activity (0.243U/ml, 0.703 U/ml) in 40, 30 °C respectively , while the optimum temperature of glucose oxidase activity (1.424 U/ml) in 45 °C, the optimum pH for glucoamylase (B) stability ranging between (5.5 - 6.5), while the optimum pH for glucose oxidase stability ranging between (5 - 6) , the optimum temperature for glucoamylase (B) stability ranging between (10 - 35) °C for 30 min, while the optimum temperature for glucose oxidase stability ranging between (25 - 35) °C for 15min, the molecular weights of glucoamylase (Aand B) approximately 52 & 66 kDa respectively using the electrophoresis technique, while approximately 68 kDa for glucoamylase (B) using the gel filtration technique, the molecular weight of glucose oxidase approximately 78 and 87 kDa electrophoresis electrophoresis and gel filtration respectively, the values of Km and Vmax of glucoamylase and glucose oxidase were (2.4 mM , 9.6 mM/min and 19.6 mM, 7.5 mM/min) respectively. The result of this study showed the Streptococcus mutans growth was killed in the using the first and the second concentration of glucoamylase and glucose oxidase (0.09, 0.009 and 0.3, 0.03 µl) respectively , while the growth was appered in third concentration of enzymes (0.0009, 0.003 µl) respectively. The NaF, ZnF2 , C 12H 7 Cl 3 FNaO2 , NaCl , NaHCO3 and KSCN with (0.5 and 1M ) leads to increase the enzymes activity , while Na3PO4 , SrCl2 , Fe2O3 and Ca(HCO3) 2 caused decreased the activity of enzymes when treated with (0.5 and1 M) from these solutions, the glucoamylase activity also decreased when it treated with (0.5 and 1M) from KNO3 solution but this solution increased the activity of glucose oxidase when it treated with (0.5 and 1 M) from this solution

الاصابة ببكتريا Helicobacter pylori وعلاقتها بمرض تصلب الشرايين القلبية == Correlation Between Helicobacter Pylori Infection And Atherosclerotic Heart Disease

Author name: رواء سعدي سلمان
Supervisor name: مي خليل اسماعيل
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: مرض قصور الشرايين التاجية هو النتيجة النهائية لتراكم اللويحات العصيدية ضمن جدران الشرايين التاجية مسببة نقص الاوكسجين وبالتالي حدوث مرض القلب الاقفاري. ويعتبر من الامراض الشائعة واحد الاسباب الرئيسية لحالات الوفاة في العالم. اضافة الى عوامل الخطورة التقلي | Coronary artery disease (CAD) is the end result of the accumulation of atheromatous plaque within the walls of the coronary arteries resulting in shortage of oxygen supply and ischemic heart disease (IHD). It was consider as one of the most common diseases and major causes of worldwide morbidity and mortality. In addition to traditional risk factors for cardiovascular disease, nowadays, accumulating evidence indicates that a variety of infectious agents may contribute to pathogenesis of CAD. The present study evaluated the anti - Helicobacter pylori IgG and IgA and the role of virulence factor of H. pylori cytotoxin associated gene (Cag A) and vacuolating associated cytotoxin (Vac A) as a risk factors for CAD.Eighty patients were divided into 2 groups : first group was 70 patients with CAD, the other group contained 10 patients with another coronary artery disease; they were admitted to Ibn Al - Bitar Specialist Center for Cardiac Surgery in Baghdad between October 2013 and January 2014. Ten individuals used as a healthy control group. All blood samples were tested biochemically such as glucose test, urea test, creatinine test and lipid profile test(cholesterol, triglyceride, LDL and HDL) and all of them showed normal results. The present study revealed that males were affected more than females (3 : 1); with no relation between their ages and bacterial infection.Serum IgG and IgA was Estimated by indirect immunofluorescent (IIF) whereas Cag A, Vac A and high sensitive C - reactive protein (hs - CRP) measured by enzyme linked immunosorbent assay (ELISA) and compared to control group results.The incidence of the anti - H.pylori IgG was highly significantly prevalent in CAD patients 78.57% (55/70), than in control group 0% (0/10), also a high significant difference in another CAD patient group 100%(10/10) as compared to control group 0% (0/10) (P? 0.01).Similarly anti - H. pylori IgA in CAD patients and another CAD patient groups showed highly significant increase when compared to control group 37.14% (26/70), 30% (3/10) and 0% (0/10) respectively (P? 0.01).The incidence of the CagA - positivity was significantly prevalent in mean value (2.74±0.19) in patients with CAD and another CAD patient group(2.72±0.31) than in control group (1.64± 0.16) (P? 0.05). Same result was observed with Vac A antigen; mean value of patient group showed significant increase (1.299 ± 0.04) when compared to controls group (1.41±0.13) (P? 0.05). Also significant increase found between another CAD patient group(1.79±0.17) and control group (1.41±0.13) (P? 0.05). Furthermore; the present study revealed significant differences of concentration levels between hs - CRP in CAD patient group (4.95 ± 0.38 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml), as well as a significant differences found between another CAD patient group (3.96 ± 0.96 µg/ml) as compared to control group (0.77 ± 0.06 µg/ml) (P? 0.05).

تشخيص طفيلي المشعرات المهبلية بتقنية تفاعل البلمرة المتسلسل RT - PCR في محافظة واسط - العراق == Diagnosis of Trichomonas Vaginalis Using Real - Time Pcr Technique In Wasit Province - Iraq

Author name: رسل واسط كاظم
Supervisor name: عبد السادة عبد العباس راهي
General topic: Biology
Specific topic: Microbiology - Parasites
Degree: Master
Language: English
University location: Wasit
First pages:
Abstract: في الدراسة الحالية، نصف طريقة سلسلة تفاعل البلمرة المتسلسل للكشف عن DNA محدد من طفيلي المشعرات المهبلية في الفحص السريع لتقنية الوقت الحقيقي لسلسلة تفاعل البلمرة. وتقييم مدى انتشار داء المشعرات وفقا مع دراسة العوامل المختلفة التي تؤثر على داء المشعرات الم | This study was involved the describe of an existing PCR method for specific detection of Tichomonas vaginalis DNA into a rapid real - time PCR assay, and to evaluated the recent prevalence of trichomoniasis accordance with studying different factors that affect on vaginal trichomoniasis in females complaining of vaginal discharge.Vaginal swab samples were collected from 401 patients attending two public hospitals and three private clinic in the Al - Kut city. Demographic data, clinical and socioeconomic status were collected from the patients using a structured questionnaire. Total genomic DNA was isolated from 60 samples of vaginal swab randomly chosen to specific detection of T. vaginalis DNA into a rapid real - time PCR.All samples were examined by the direct microscopic examination (wet mount and Giemsa - stained smear). Their ages were ranging from 14 - 63 years. The vaginal swabs examined by wet mount and Real Time - PCR to detect the presence of T. vaginalis. The pH strips were used to detect the vaginal acidity.Of the 60 women, 13 were positive by Real Time - PCR giving the prevalence rate of (21 67%) with sensitivity, specificity and accurate rate 100% and the direct microscopic examination (wet mount and Giemsa - stained smear) show 5/60 (8.33%) positive case while 55/60 (91.67%) gave a negative result with a sensitivity and specificity, and accuracy (38.5%) (100%) (86.7%).Women aged (24 - 33)years had significantly higher prevalence of trichomoniasis (46.1%) than other age groups.Married women had the highest percentage of trichomoniasis (76.9%), comparing with widowed women (7.7%) and divorced women (15.4). With statistical significant difference between these groups. Uneducated women had significantly higher rate of T.vaginalis infection (76.9%) than educated women (23.1%). Statistical significant difference was detected between these groups.Pregnant women showed a higher infection rate 7(53.8%) than non - pregnant 6 (46.2%).Women with vaginal pH (6 - 7), (5 - 6) had significantly higher rate of infection (53.8% and 38.5%) respectively.Women who used (loop and the oral contraceptive pills) contraception had the lower rate of infection(23.1%) than those not using any contraception (67.9%). Statistical significant difference was detected between these two groups.The highest percentage 2(66.67%) was found among women with T. vaginalis who used contraception for >2 years.The higher percentage of infected with T. vaginalis parasite was found in bad odor or fish odor vaginal discharge which was noted (76.9%) of infected women with T. vaginalis. Statistical significant difference was detected between these groups. Women with Frothy discharge color showed higher significantly percentage of infection 7(53.8%) than other with Yellow to green and bloody discharge and Clear discharge 3(23.1%), 2(15.4%) and 1(7.7) respectively.Multipara women revealed the highest rate of trichomoniasis (46.15%). No statistical significant difference was detected between infection and parity.T.vaginalis was more commonly seen in women with frequency of sexual intercourse 2 - 3 time per week 5 (50%) cases. The lowest incidence was detected among those who had sexual intercourse once per month 1 (10%), with statistical significance among these variables. T.vaginalis was found to be predominant among housewives (69.23%) than employees (30.77%).Fertilizing women were showed higher 9(69.2%) T. vaginalis infection than non - fertile women 4(30.8%).The high incidence of T.vaginalis infection was found among rural females 8 (61.5%), followed by urbanized females 5 (38.5%).

الكشف عن الجينات المقاومة للكاربابنيم لبكتريا Acinetobacter baumannii المعزولة من عينات سريرية في محافظة بابل == Detection of Carbapenem - Resistant Genes of Acinetobacter Baumannii Isolated From Clinical Samples In Babylon Province

Author name: رعـد عبد العباس حمزة الهرموش
Supervisor name: ايمان محمد جار الله
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: للفترة من اذار 2014 الى اذار 2015 تم جمع 1300 عينة سريرية مختلفة (عينات ادرار ومسحات جروح وحروق وعينات دم ومسحات من الفم والاذن والعيون بالاضافة لعينات البراز والقشع) من اثنين من مستشفيات محافظة بابل (مستشفى الحلة التعليمي ومستشفى بابل التعليمي للنسائية و| During the period between March 2014 and March 2015, a total of 1300 clinical specimens (urine, wounds, burns, blood, throat, ear, eye, stool, and sputum) were collected from two hospitals in Babylon province; Al - Hillah Teaching Hospital, and Babylon Hospital for Maternity and Pediatric. All specimens were cultured and 10 Acinetobacter baumannii isolates were obtained from clinical specimens in a percentage of (0.76%) distributed in blood 1 (0.6%), urine 2 (1%), wound infection 1 (0.75%), burn 5 (0.85%) and throat 1 (2%). This study was conducted to determine the occurrence of carbapenem resistant A. baumannii isolates obtained from Hillah hospitals. Isolates were identified according to API20E system and further confirmed using PCR technique. Antibiotics susceptibility was assayed by using disks diffusion method according to CLSI recommendations. All isolates revealed positive results with rapid iodometric test indicting the ability of beta lactamase production. Phenotypic detection of carbapenemase production was performed using the imipenem - EDTA disk and modified Hodeg's test (MHT). Then isolates were subjected to monoplex PCR targeting blaOXA - 51, blaOXA - 23, blaOXA - 24, blaOXA - 58, blaIMP, blaSIM blaNDM - 1, blaNDM - 2 and blaVIM genes, as well as, efflux pumps genes. One of the identified isolates (10%) was found to be imipenem, meropenem and ertapenem resistant, this isolate gave positive result with the imipenem - EDTA disk and (60%) of isolates were positive to MHT. PCR experiments showed ; all isolates were harbored blaOXA - 51 gene, four (40%) isolates were harbored blaOXA - 23 gene, three (30%) isolates were harbored blaOXA - 24 gene, four (40%) isolates were harbored blaOXA - 58 gene, five (50%) isolates were harbored blaIMP gene, six (60%) isolates were harbored blaSIM gene, two (20%) isolates were harbored blaNDM - 1 gene, four (40%) isolates were harbored blaNDM - 2 gene, while none of these isolates harbored blaVIM gene. The present findings suggest that emergence of (OXA - 23, OXA - 24, OXA - 58, IMP, SIM, NDM - 1, NDM - 2) carbapenemase producing A. baumannii clinical isolates in Hillah City hospitals. Also there are indicative appearance of efflux pump genes ; (50%) for Ade - A and Ade - B each other, (40%) for Ade - C, (80%) for all of Ade - R and Ade - S, (100%) for all of Ade - I and Ade - J, and (50%) for Ade - Y. All isolates of A. baumannii appear as MDR, while only one appear to be as PDR. The trans - mobility of resistant genes was examined by trans - conjugation experiment ; the results indicated that only blaIMP and blaOXA - 23 genes were transferred horizontally in the current study. In attempting to investigate any blaNDM gene variation the results showed some different than NCBI - Blast A. baumannii blaNDM - 1 and blaNDM - 2 it may as a unique genotyping.These results revealed that carbapenemase producing A. baumannii were detected in both phenotypic and genotypic methods (PCR). This underlies the importance of their accurate identifications and reporting to prevent the emergence of complete resistance to the most potent drugs against A. baumannii in Babylon province.

توصيف العاثيات الحالة للمكورات العنقودية الجلدية (S. epidermidis) == Characterization of Lytic Phage Against Staphylococcus Epidermidis

Author name: ريام سليم هندي الزيادي
Supervisor name: غانم عبود جابر المولى
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: لحصول على عزلات Staph. epidermidisتم جمع (160 عينة) من حالات سريرية مختلفة كالتهاب المجاري البولية, التهابات جلدية, البلعوم, الانف, والاذن. تم الحصول على 51 (875¸31?) عزلة للمكورات العنقودية الجلدية Staph. epidermidis خلال فترة امتدت من ايلول 2014 الى كان | In order to isolate Staph. epidermidis, 160 clinical specimens were collected from (urinary tract infection, skin infection, pharynx, nose, and ear). Only 51(31.875 %) Staph. epidermidis isolates were obtained during a period from September 2014 to January 2015, depending on some biochemical tests and VITEK2 system. The Staph. epidermidis was given (gram stain, catalase , urase) positive, (coagulase, manital fermentation, oxidase, motility) negative, non haemolytic to human blood with some exception, most of the strain were able to produce biofilm, and (100%), (64.70%), (74.50%) resistant to penicillin G, ampicillin, and amoxicillin respectively. The Staphylococcus species identified during study were 44 (27.5%) isolates of Staph. aureus, 5 (3.125 %) Staph. haemolyticus, 4 (2.5 %) Staph. saprophyticus, 8 (4%) isolates other Staphylococcus spp. such as Staph. hominis ssp. hominis, Staph. capatis, Staph. xylose, Staph. simulanus, Staph. lentus, and 48 (30 %) from unknown genera. To isolate bacterioghages from sewage water, several sewage water samples were assayed using plaque assay of double agar overlay as a source of Staph. epidermidis phages. The bacteriophages were described depending on plaques size and shapes, phage 1 was the most predominant and frequent in the bacterial lawn and able to infect other S. species such as S. aureus. It has been selected to study it is titer, latent, rise period, and burst size were calculated. The effect of temperature, pH , and NaCl ions on it is original titer were studied.The results revealed a gradual decreasing in the phage titer with increasing dilution number. Latent period extended to (30 minutes) , while rise period was started with (40 minutes) extending to (60 minutes) , burst size was 2.346. Each temperature at several incubation periods , pH , and NaCl ions was significantly varied depending on phage titer. The optimum temperature was 40 ° C, while the 80 ° C was represented the inhibitor temperature. L.S.D. at level (0.05) for interaction was 39.552. The pH 6.5 - 7.5 represented the optimal pH for the best phage activity while the phage titer beginning to declining in above and below this range of optimal pH, L.S.D. at level 0.05 was 17.898 , the optimum NaCl ions concentrations were (0.1 M and 0.25 M), while the titer was significantly decreased with increasing the NaCl ion concentration in the culture solution, the L.S.D. at level 0.05 was (10.696). In conclusion of this study found that Phage1 was considered as predominant phage because of their ability to infect other Staphylococci species such as Staph. aureus.

تاثير الادينوسين ثلاثي الفوسفات على اخصاب وتطور الاجنة الاولي خارج الجسم الحي في الفئران كنموذج للجنس البشري == Effect of Adenosine Triphosphate On In Vitro Fertilization And Early Embryonic Development In Mice As A Model For Human Being

Author name: مهند علي مشكور
Supervisor name: محمد باقر محمد رشاد فخر الدين | نوال خيري العاني
General topic: Biology
Specific topic: Zoology - Embryology
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: يعد الاخصاب خارج الجسم الحي (IVF) من احد اهم التقنيات المستخدمة لانتاج اعداد كبيرة من الاجنة لبحوث التطور الاساسيه والبيولوجيا الجزيئية لنضوج البويضات المختبري والاخصاب. يعتمد الاخصاب خارج الجسم الحي وظروف حفظ الجنين المثلى على مكونات الوسط الزرعي كونها ا | In vitro fertilization (IVF) is one of the most important techniques used to produce large numbers of embryos for research into the basic development and molecular biology of in vitro oocytes maturation and fertilization. Optimal IVF and embryo culture conditions depend on the composition of culture media being the most important determinants of success in vitro interaction of the gametes and subsequent embryo development. Adenosine 5 - triphosphate (ATP) is a fundamental factor to maintain life, by providing energy, and controlling the cell function and metabolism. Objectives : The present study aims to investigate the effect of ATP supplied to SMART medium on a rate of fertilization and early embryonic development (ED) in mice as a model for human beings.Materials and Methods : The female mice (90) were superovulated using superovulation program to produce a large number of oocytes. These were divided into three groups, the first group was inseminated with vassal sperm in vitro alone (control); the seconed group (G2) was inseminated with vassal sperm in vitro using SMART medium enriched with low concentration of ATP(1.25mM). The third group (G3) was inseminated with vassal sperm in vitro using SMART medium enriched with high concentration of ATP (2.5mM). Mouse spermatozoa were collected from both vasdeferens. Then sperm parameters were assessed after 30 min. IVF technique was performed for 3 groups, and assessed after 20 - 22h. Then, percentages of early embryonic development stages and abnormal embryos morphology (%) for each embryo stage were assessed.Results : Results of the present study revealed significant increment (P<0.05) in the in - vitro fertilization (%) when using 1.25mM ATP as compared to 2.5 mM ATP and the control group. Significant differences (P<0.05) in the 1 - cell stage were assessed in 2.5mM compared with 1.25mM groups and the control group. Also, Significant differences (P<0.05) in the 2 - cell and 4 - cell stage were assessed in 1.25mM ATP compared with other groups. However, non significant differences in the percentages of abnormal embryos morphology were reported between both treated groups of ATP.Conclusion : From the results of present study it was concluded that the low ATP concentration (1.25mM) enriched to the culture medium improved the percentage of in vitro fertilization and early embryonic development.

تقييم التعبير الجيني للجينات CK19, MGB, MUC1 microRNA - 195 and microRNA - let 7a في نساء عراقيات مصابات بسرطان الثدي == Evaluation of MGB1, CK19, MUC1, microRNA - 195 and microRNA - let - 7a Expression In Iraqi Women With Breast Cancer

Author name: جودت نوري غائب
Supervisor name: عبد الحسين مويت الفيصل
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Baghdad
First pages:
Abstract: The present study aimed to shed light on the identification a panel of genes with distinct expression patterns in breast cancer patients as a useful tool for breast cancer early detection and progression. The present study designed to investigate the levels of genes expression of five genes panel (MGB1, CK19, MUC1, miR - let7a, and miR - 195) in circulating free mRNA and miRNA from blood of breast cancer patients versus noncancerous samples (benign tumor and healthy controls) to establish a biomarker panel potentially useful for early detection and progression of disease. The expression patterns of the identified genes were then compared with certain clinical features (age, lymph node status, and tumour size).Blood samples from 55 patients with different stages of newly diagnosed invasive ductal carcinoma were provided by certain Iraqi hospitals. Two control groups were used in this study; 10 samples of patients with benign breast tumors, and 20 samples from healthy donors. The samples preservation with TRIzol was done. Samples subjected to total RNA extraction, and then molecular study by using reverse transcription and real time PCR at Molecular Oncology Unit in Guy´s Hospital - Kings College / London.The study reached the following results : 1. The patients’ age range was 24 - 70 years and the median was 49 years with high frequency of patients in the range of 40 - 59 years. According to the family history, 50(90.91%) of patients were have negative family history. According to the clincopathological features (lymph node status and tumor size) the percentages of patients with multiple lymph nodes and tumor size 2.0 - 2.9 cm were the highest groups, which showed statistically highsignificant differences.2. For MGB1 gene expression, the result showed that 30(54.5%) patients were MGB1 - positive while 25(45.4%) patients were MGB1 - negative.According to malignancy status the percentage of patients with high level of MGB1 gene expression 22(40%) was significantly high. In correlation with age groups there was statistically no significant differences in the levels of gene expression with age. In correlation with clincopathological features, lymph node status showed that the highest percentage of MGB1 positive patients 18(66%) were multiple for lymph node status, and the tumor size results showed that there was decreasing in the MGB1 geneexpression with increasing of tumor size. 3. For CK19 the results of present study showed that 41(74.54%) patients were CK19 - positive, while 14(25.46%) patients were CK19 - negative.According to malignancy status the percentage of patients with high level of CK19 gene expression 30(54.45%) was significantly higher in compare with benign tumor patients and healthy controls. In correlation with age groups there was statistically no significant differences in the levels of gene expression with age. In correlation to the clincopathological features, lymph node status results showed that the highest percentage of CK19 positive patients 24(88.89%) were multiple for lymph node status, and there was increasing in the CK19 gene expression with increasing of tumor size.4. Mucin 1 (MUC1) gene expression results showed that the percentage of MUC1 - positive breast cancer patients 72.73%(n=40) was significantly higher when compared with benign tumor patients and healthy controls. According to the age groups the results showed no significant correlation with patients age groups. The clincopathological features results showed that the highest percentage of MUC1 positive patients 84.21%(n=16) have few lymph node status, and there was statistically significant association between the increasing of MUC1 gene expression and tumor size. 5. The miR - 195 gene expression results showed that the percentage of patients with positive miR - 195 gene expression 83.64%(n=46) was significantly higher than patients with negative miR - 195 expression 16.36%, the study also showed that the percentage of high miR - 195 expression samples 69.09% (n = 38) was significantly higher in compare with benign tumor patients and healthy controls. According to the clincopathological features, patients with multiple and few lymph node metastasis were found to have significantly the highest percentages of miR - 195 expression, while the tumor size results showed that there was increasing in the miR - 195 gene expression with increasing of tumor size. 6. The percentage of miR - let 7a - positive breast cancer patients 81.82% was significantly higher, when compared with miR - let 7a - negative patients 18.18%. In correlation to the clincopathological features, results showed no significant correlation in miR - let7a gene expression levels with patients age groups, for lymph node status, the results showed that the highest percentages of let 7a positive patients were those with multiple lymph node and few lymph node metastasis. The tumor size results showed that there was increasing in miR - let 7a gene expression with increasing of tumor size.7. According to genes combinations, three genes combination (CK19, miR - 195 and miR - let 7a) was significantly positively expressed with percentage of 60%(33/55), which reflect their potential diagnostic and prognostic value.8. The study concluded that the three genes combination (CK19, miR - 195 and miR - let 7a) may have potential applications as a diagnostic and prognostic markers for breast cancer.

دراسة جزيئية، وخلوية وراثية، ومناعية لمرض سرطان القولون والمستقيم في العراق == Molecular, Cytogenetic And Immunological Study of Colorectal Cancer In Iraqi Patients

Author name: حيدر جاسم محمد الخفاجي
Supervisor name: علي حمود السعدي | عزام قنبر اغا
General topic: Biology
Specific topic: Zoology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The study consists of three parts related with patients of CRC as in : 1 - Molecular part 2 - Cytogenetic and molecular genetics part and 3 - Immunological part. In addition of their relatives of clinical and pathological diagnosis, genus, and tumor locations in 150 of Iraqi patients confirmed with CRC collected from Teaching Hospitals of some Iraqi governorates. The percent of male to female (54.66% / 45.43%) and the aged range of study were 16 to 80 years.The first part consist a study of five types of genes related with CRC represented by MLH1, MSH2, APC, K ras, and SMAD7 genes. Some of these genes develop with germline mutations as in MLH 1 exons1 and 15 so as MSH2 genes. While the rest genes related with a sporadic of CRC. All these genes were amplified by conventional polymerase chain reaction (PCR) for study the types of the mutations and their defect of these genes on CRC. The APC exon11and K ras exon1 genes were processed by single strand conformational polymorphism (SSCP) technique. The results of PCR - SSCP technique for two genes represented by appeared three types of bands, which were (AA), (AB) and (AC) bands. The important band was (AB) which constitutes the variability region represented by 84.2% and 44.82% in patients for both genes. The results of patients with mutated bands with high significant differences(P?0.05).compared with healthy control. Patients carried these bands subjected to PCR - Sequences technique. The analysis results for APC gene sequences were substitutions mutations type of single nucleotide polymorphism (SNP) change Cytocine to Thiamin (C>T) at 1972 location of genome. While the analysis results of Kras gene appeared two types of mutations, substitution and frame shifts represented by deletion mutation and so as appeared stop codon mutation.The other genes represented by MLH1, MSH2, and SMAD detected by direct PCR - Sequences. The results analysis of MLH1 gene, exon (1and 15) represented by nucleotides change with high frequencies of substitution mutation through exon1 at different locations of nucleotides. So as frame shift mutation type deletion through exon15. While for MSH2 gene, exon 6 from 6.66% represent by deletion mutation. A spread study for SMAD7 gene, exon4 were done through 30 patients average age 52 years (male to female 56.7% : 53.3%) confirmed colorectal adenocarcinoma compared with 15 healthy. A mutation of 20% of (SNPs) were identified.The second part which represented standard conventional cytogenetic and molecular genetics were done through peripheral blood culture (PBC). The study showed increasing of mitotic index (MI) in patients with significant differences (P?0.05) compared with healthy controls indicating for increasing of proliferation of the lymphocytes division. The study showed some chromosomal aberrations with significant, the majority of aberrations were higher significant in dwarf and aneuploidy chromosomes so as elongation chromosomes revealed significant differences (P?0.05) between patients and healthy. The appeared of Polyploidy chromosomes, with significant differences (P?0.05), that’s seem to be good indicator for cancer disease. The molecular genetics alterations which dependent on cytogenetic investigation were done through deletion of long arm of 5 chromosome which APC gene is located. The test elucidates the importance of inactivation (deletion) of APC gene in elicited of colorectal cancer. The study of 20 patients, were investigated by fluorescent in situ hybridization (FISH). The results showed 60% patients which have 5q arm deletion of (+). And (5%) have two deletions (++) which was a male aged less than 60 years. The results analysis explained significant differences (p?0.01) between studied group and deletion (+) of arm 5q. A correlation represented by significant differences (p?0.01)through dysfunction of APC gene deletion of 5q were found with high percent among sporadic adenocarcinoma 58.3%, with less in attenuated familial adenomatous polyposis (AFAP) and familial adenomatous polyposis (FAP) represented by the (25%), and (16.7) respectively.The last part related with immunological test were done by detection of tumor markers represented by Carcino Embryonic Antigen (CEA), IL - 33 and IL - 31.These markers represented a confirmative indicators for colorectal adenocarcinoma which were tested by ELISA technique in (79) patients confirmed with CRC of male and female. These tumor markers in tested with patients showed high significant differences (p?0.01) compared with healthy controls. Another immunological test for detection of Human papilloma virus (HPV) type 18 E6 gene expression in CRC by Immune histochemistry technique (IHC) in 71 (FFPET) of CRC. The results of this study showed there were a correlations between patients and adenocarcinoma positive HPV18 E6 infection 43.7% of patients infected with virus, with high significant differences (p?0.01) and higher infection in female (67.7%) than male (32.3%). So as a correlations were found between HPV18 E6 expression and tumor tissue locations, explained by high percentage 45.2% in rectum.While a tumor marker was (CD8+) was used to determine its role in human immune surveillance in tumor regions of CRC so as with regions which were infected by HPV. The study revealed high significant differences between healthy control and studied groups which have (CD8+) positive infiltration in tumor origins through detection by (IHC).In conclusions diagnosis of CRC can be detected by special genes like K ras gene through professional PCR processing, compact with tumor markers, so as Fluorescent in situ hybridization (FISH) technique provides a precise method which can be used for detection of alteration of molecular and cytogenetic related with CRC.

تاثير بعض المستخلصات النباتية في معايير بيولوجية مختلفة للفئران == Effect of Some Plant Extracts On Different Biological Parameters On Mice

Author name: عقيل حيدر عطا الله
Supervisor name: مؤيد صبري شوكت
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: اجريت الدراسة الحالية للتحري عن المركبات النشطة الموجودة في المستخلص الخام المائي والميثانولي لاوراق الاس والنعناع والريحان ودراسة تاثيرها على فعالية انزيم الاسيتل كولين استريز ومستوى الدهون ومستوى السكر ومستوى انزيمات الكبد(ALP وSGPT وSGOT) ومستوى الانتر | The present study was conducted to investigate the active constituents found in aqueous and methanolic crude leaf extracts of Myrtus communis, Mentha piperita and Ocimum basilicum, and studies it effect on the acetylcholinesterase activity, levels of lipids, level of glucose, level of liver enzymes (ALP, SGPT and SGOT) and level of Interleukins (IL - 2, IL - 4, IL - 6 and IL - 10) in laboratory mice (in vivo). The results of the phytochemical analysis of the crude aqueous and methanolic extracts of Myrtus communis, Mentha piperita and Ocimum basilicum contain active compounds : Phenols, Flavonoids and Tannins and missing of Steroids and Coumarines in all extract but Saponins and Alkaloids found in alcoholic extract only, while terpens were present in Mentha piperita and Ocimum basilicum and absent in Myrtus communis. The results of administrating animals with different extracts showed no significant difference on blood Acetylcholinesterase (AchE) compared with ethanol liquid diet, while the alcoholic and aqueous extracts of M. communis, M. piperita and O. basilicum in the serum of decreased Acetylcholinesterase level significantly(p?0.05), liver and brain [(1.25 ?pH/30 min, 1.23 ?pH/30 min, 1.28 ?pH/30 min, 1.20 ?pH/30 min, 1.26 ?pH/30 min, 1.28 ?pH/30 min), (0.35 ?pH/30 min, 0.34 ?pH/30 min, 0.34?pH/30 min, 0.36?pH/30 min, 0.42?pH/30 min, 0.39?pH/30 min), (0.32?pH/30 min, 0.37?pH/30 min, 0.39?pH/30 min, 0.36?pH/30 min, 0.34?pH/30 min, 0.37?pH/30 min)] respectively compared with animals fed on ethanol liquid diet [(1.37 ?pH/30 min), (0.47 ?pH/30 min), (0.45 ?pH/30 min)] respectively. The methanolic and aqueous extracts of M. communis, M. piperita and O. basilicum reported a significant decrease in level of the total cholesterol and Low Density Lipoprotein (LDL) [(181mg/dl, 186mg/dl, 175mg/dl, 172mg/dl, 181mg/dl, 184mg/dl), (118mg/dl, 121mg/dl, 114mg/dl, 109mg/dl, 118mg/dl and 120mg/dl)] respectively, when compared with animals fed on ethanol liquid diet [(195 mg/dl), (132mg/dl) ] respectively while no effect was reported on High Density lipoprotein. The level of triglyceride reduced after the treatment with ethanol liquid diet, and then the level increased after the treatment with M. communis and O. basilicum extracts. The methanolic and aqueous extracts of M. communis, M. piperita and O. basilicum have led to a reduction in the level of glucose in the serum which increased after the treatment with ethanol liquid diet. Methanolic and aqueous extracts decreased the liver enzymes (ALP, SGPT and SGOT) significantly to the normal level (18, 17, 21, 18, 20 and 21) KAU, (19, 19, 16, 13, 17, 17) IU/L and (21, 24, 17, 15, 17 and 19) IU/L respectively after the increase by the treatment with ethanol liquid diet (24) KAU, (26) IU/L, (28) IU/L as compared to control (20) KAU, (12.2) IU/L, (13.5) IU/L, respectively. The level of Interleukin - 2 and Interleukin - 4 in the serum significantly increased in the treatment of alcoholic and aqueous extract of M. communis, M. piperita and O. basilicum [(18 pg /ml, 17 pg /ml, 20 pg /ml, 18 pg /ml, 20 pg /ml, 20 pg /ml), (100 pg/ml, 110 pg/ml, 119 pg/ml, 108 pg/ml, 90 pg/ml, 92pg/ml)] in comparison with ethanol liquid diet treatment [(14 pg /ml), (77 pg/ml)] respectively. While the level of Interleukin - 6 and Interleukin - 10 increased significantly in the serum, when animals were fed with ethanol liquid diet [(259pg/ml) and (501pg/ml)] respectively, and then decreased significantly after the treatment of methanolic, aqueous extract of M. communis, M. piperita and O. basilicum reported [(198 pg/ml, 202pg/ml, 202pg/ml, 201pg/ml, 214pg/ml, 217pg/ml), (370 pg/ml, 385pg/ml, 200pg/ml, 280pg/ml, 350pg/ml and 350pg/ml)] respectively.

التاثيرات المعدلة - مناعيا للمعززات الحيويه ضد بكتريا Salmonella enterica Serovar Typhimurium المعزولة من حالات الاسهال لدى الاطفال في ذكور الفار الابيض == Immunomodulatory Effects of Probiotics On Salmonella Enterica Serovar Typhimurium Isolated From Diarrheal Children In Albino Male Mice

Author name: صفا خليل ابراهيم
Supervisor name: عبد الواحد باقر الشيباني | علي حسين ادحيه
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Baghdad
First pages:
Abstract: This study aimed to determine the frequency of Salmonella Typhimurium and its multi - drug resistance (MDR) status as a diarrheal causative pathogen in children younger than five years old, as well as to investigate the role of four probiotic microorganisms(L.acidophillus, L.casei, S.cerevisiae, S.boulardi) in controlling such infection.For this purpose, 128 stool samples of patients (76 males and 52 females) was included in this study. They were children suffering from diarrhea and fever who admitted to the “Central Pediatric Hospital” in Baghdad during the period from April to September, 2012. Their ages ranged from six days up to five years.The immunological effects of probiotics and MDR S. Typhimurium isolate in the experimentally infected and probiotic - treated mice were investigated via assessing the level of ten cytokines (IFN - ?, IL - 1?, IL - 4, IL - 10, IL - 12, IL - 17A, IL - 21, GM - CSF, RANTES and IP - 10) in the lavage of small intestine. Accordingly, five groups of mice were used in the in vivo part of this study; Mice in group I received probiotic for 7 successive days, challenged with S. Typhimurium on day 8, and dissected on days 14 and 21. Group II wassimilarly treated, but the probiotic was continued for 14 days. Group III was given the probiotic only, and group IV was challenged with S. Typhimurium, while group V was the control.Results obtained in this study could be summarized as follows : 1. Out of 128 stool samples, S. Typhimurium was isolated and identified in 9 samples only (7.03%). All isolates were totally resistant to nalidixic acid, with the exception of one isolate which showed intermediate sensitivity.Furthermore, only one of these isolates (symbolized B) was found to be resistant to three antibiotics (ampicillin, amoxicillin and nalidixic acid).Therefore, this isolate was considered as an MDR isolate and selected for further experiments in the study.2. When the susceptibility of MDR S. Typhimurium isolate B was further assessed in vitro by using four probiotics (Saccharomyces cerevisiae, S. boulardi, Lactobacillus acidophilus and L. casei), results showed that S.cerevisiae and L. acidophilus were the most efficient by recording the highest inhibition zones (12.6 and 16.3 mm, respectively), therefore, they were further investigated for their anti - S. Typhimurium effects in vitro and in vivo. 3. By using the unconcentrated and (one - fold, two - fold, three - fold) concentrated filtrates of these two probiotics, it was found that the three - fold filtrates were most efficient in their antibacterial activity by recording the highest inhibition zones (25.0 mm for S. cerevisiae and 31.0 mm for L. acidophilus.4. Significant increases in the values of liver index were observed in mice of group I treated with L. acidophilus at 21 days (10.73%) compared to the corresponding group treated with S. cerevisiae (7.41%) or other four groups. For spleen, index value in L. acidophilus groups was higher than the corresponding groups in S. cerevisiae. Mice treated with a probiotic alone or in a combination with the pathogen showed significant increases in the spleen index values of all groups compared to the untreated mice (group V).5. Both probiotics were effective in reducing S. Typhimurium colony forming units per plate (cfu/plate) in the liver and spleen. In liver, mice in group IV showed a count of 224.4 cfu/plate, which was significantly higher than any count in groups of L. acidophilus and S. cerevisiae. Group II mice recorded better results than group I mice, while the lowest counts (21.6 and 27.8 cfu/plate for L. acidophilus and S. cerevisiae, respectively), were observed at day 21.6. The ten investigated cytokines showed different levels in the small intestine wash; such differences were subjected to the group of mice underinvestigation and type of probiotics used. In addition, variations in IFN - ?/IL - 4, IFN - ?/IL - 10, IL - 4/IL - 10 and IL - 17A/IL - 10 were also observed.

النمو، الفعالية الانزيمية والتعبير الجيني للانزيمات المحللة للبروتين (Protease) في الفطر الجلدي Trichophyton rubrum == Growth, Enzyme Activity And Gene Expression of Proteases In A Dermatophyte Trichophyton Rubrum

Author name: سارة كريم كاظم الزبيدي
Supervisor name: جواد كاظم الجنابي | عدنان حمد الحمداني
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: صممت الدراسة الحالية لتوصيف الانماط الجزيئية والمظهرية للنمو والفعالية الانزيمية للانزيم المحلل للبروتين والتنوع الوراثي وعلاقته بالتعبير الجيني بين عزلات الفطر الجلدي.Trichophyto rubrum ولهذا الغرض جمعت 150 عينة سريرية (قشطات جلدية (80), اجزاء شعر (60) | The present study was designed to characterize the morphological and the molecular patterns of growth, enzymic activity of proteases, genetic diversity and their correlation with gene expression among strains of Trichophyton rubrum. For these purpose, A total of 150 clinical specimens (skin scrapings (80), hair fragments (60) and nail clippings (10)) were collected from 100 patients (70 males&80 females) whom clinically diagnosed with dermatophytosis after attendingto the dermatology and venereal diseases centre of Mergan Teaching hospital and private clinic in Babylon city from Feb. 2014 to May 2014. T. rubrum were isolated and identified using cultural, biochemical and physiological tests. Isolates were then subjected for confirmation by PCR, genotyping using RFLP - PCR, sequencing and registration of these sequences in GeneBank for obtaining accession numbers then phylogeny. The growth conditions, were tested, in addition to, the genetic expression of proteases (exocellular protease and endocellular aminopeptidase) were determined using Real - Time PCR. Out of 150 specimens, 24 (16%) isolates were dermatophytic fungi and only 5 (20.8%) of them belong to T. rubrum. The influence of cultural conditions in growth of T. rubrum showed that the 30 ?C, pH 6, SDA medium and 7 days incubation were the optimal conditions for its growth. Proteolytic activity of isolates of T. rubrum against casein as a substrate revealed an ability to produce protease in solid and liquid media after 14 days of incubation. This activity was varies according to the type of isolate where the isolate No.1 (isolated from skin) gave a high proteolytic activity (5.6cm) in solid media and (80.1U/ml) in liquid media in comparison with other tested isolates (No.2 - No.8). on the other hands, the 9 days of incubation, 30 ?C, pH 7 and 0.5% substrate concentration were the optimal condition for proteolytic activity of these isolates. The molecular tests confirmed that all tested isolates belong to T. rubrum with amplicon size (601bp) after amplification of ITS1 primers using PCR technique. While the RFLP - PCR technique showed the presence of two genotypes (I%II) belong to T. rubrum with subgenotypes (Ia - Id) and (IIa - IId) respectively. The relative quantification of proteolytic activity (exocellular protease and endocellular aminopeptidase) produced by T. rubrum genotypes were expressed by using Real - Time PCR after amplification of the target gene of ptotease and aminopeptidase in comparison with housekeeping gene (? - actin) as a reference gene. The results showed the up - regulation of gene encoded to exocellular protease than the down - regulation of endocellular aminopeptidase produced by T. rubrum in the presence of casein as a substrate. The internal transcribed spacer 1, partial sequence, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence and 28S ribosomal RNA gene, partial sequence of local isolates of T. rubrum were used for sequencing, registration in Genebank - NCBI and phylogeny. Five accession numbers were recorded and available to NCBI, EMBL in Europe and the DNA Bank of Japan. These accession numbers were : KP979787, KP979788, KP979789, KP979790, KP979791. Phylogenetic relation between local strains and world strain showed a high identicasl with T. rubrum (GQ376105.1). This is the first study in Iraq which employed sequencing, registration of sequences in Genebank - NCBI and carrying out phylogeny of local and world strains of T. rubrum.

دراسة بيئية للطحالب الهائمة والملتصقة على النباتات المائية في نهر العباسية/ وسط العراق == An Ecological Study of Phytoplankton And Epiphytic Algae On Aquatic Macrophyta In Al - Abbasiya River/Middle of Iraq

Author name: شيماء جبار هادي الجحيشي
Supervisor name: احمد عبيس مطر | جاسم محمد سلمان
General topic: Biology
Degree: Master
Language: English
University location: Najaf
First pages:
Abstract: اجريت الدراسة الحالية شهريا في اربعة مواقع على نهر العباسية وسط العراق للمدة من اذار 2012 الى شباط 2013، شملت الدراسة قياس بعض الصفات الفيزياوية والكيميائية لمياه النهر ودراسة الصفات النوعية والكمية لمجتمع الطحالب الهائمة (Phytoplankton) والطحالب الملتصقة | The present study was conducted monthly at four sites that located at Al - Abbasiya River middle of Iraq, for the period from March, 2012 to February, 2013 including studying some physiochemical properties of water and quantitative and qualitative of phytoplankton and epiphytic algae on aquatic macrophyta by selecting five species of aquatic plants : Phragmites australis Cav., Typha domengensis per., Ceratophyllum demersum L., Potomogeton pectinatus L. and Myrophyllum verticillatum L. Results also showed that, the air temperature ranged between 10.0 to 45.3 C?, while, the water temperature was 6.3 to 33.0 C?. Transparency values ranged between 0.29 to 3.06 m, while, the current velocity was 60 - 730 cm/ sec. The study also revealed that the pH was limited at the period of study ranged 6.97 to 9.13. Electrical conductivity and salinity were about 163.33 to 1157 ?s. cm and 3.68 to 23.0 0 ‰, respectively. Total dissolved solids values were about 277 mg/L to 900g/L. Total suspended solids values ranged between 0.09 - 37.0 mg/l. Results showed that, slightly alkaline at and bicarbonate ions prevailed, total alkalinity was 42 to 810 mg /L. Dissolved Oxygen values were 1.83 to 12.33 mg/L and biochemical oxygen demand was 1.4 to 8.0 mg/L, water hardness value in the studied sites ranged between 60 to 2000 mg CaCO3/L., While, calcium concentrations was 86.84 to 1783.0 mg CaCO3/L. and Magnesium concentrations was 6.70 to 268.66 mg CaCO3/L. Reactive phosphate concentrations in this study produced values ` ranged from 0.01 to 5.06 mg /L, and Nitrite concentrations ranged between nill to 5.20 mg /L, Nitrate concentration ranged between 0.09 to 6.47 mg /L. 199 species were recorded as total species number of phytoplankton at the period of study that, belong to Diatoms algae consisting of 61.30% : 88 species which belong to Pennales and 34 species for centrales, followed by Chlorophyta and Cyanophyta that were 42 and 21 species, respectively. Pyrrophyta 1, Euglenophyta 2, Rhodophyta 2, Pheophyta 5, Chrysophyta 5 species. Bacillariophyta gave the highest total number was 9303 × 104 to 1074 × 104 cell / L of fresh weight that was recorded at site 1 during April , 2012 and May, 2012, while, others algae 9823× 104cell/L in site 3 in July, 2012 compared to 1036 × 104cell/l at site 4 in April, 2012 for the total phytoplankton population density. Site 1 was the most divers sites with numerous number of species of algae, reaching the number of 66 genera and 85 species. while, the least number of species at site 3 were 65 genera and 70 species. April and October, 2012 have the most total cell numbers available for diatoms and non - diatoms algae. Nitzschia palea ; N.commnis and N. kutzingiana were the highest abundance of species showed an average of 46.80% of the overall phytoplankton sampled. Nitzschia was followed by Ankistrdesmus falcatus (25.53%) and Anabaena cylindrica (17.02%).There were some species present in all sites during the period from March, 2012 to February, 2013 i.e. Anabaena cylindrical, Dimorphococcus lanatus, Draparnaldia judayi, Euastrum dubium, Pilayella littoralis, Chrysoamoeba radiansklebs, Melosira distance, Stephanopyxis turris, Amphora ovalis, Cocconeis placentula, Gomphonema augur, G.tenuirostrum, Semiorbis sp and Pinularia biceps. Epiphytic algae types were diagnosed during the study of 256 species within 8 division. Bacillariophyta division was the dominate reaching 172 species composed to 67.18% of the total number, most of them belong to Pennales with 140 species that was more than Centrales 32 species, Chlorophyta 47 species form 18.35%, Cyanophyta 22 species form 8.59% and Chrysophyta and Pheophyta 5 species for both formed 1.95% , Euglenophyta and Rhodophyta 2 species for both formed 0.78% and Pyrrophyta algae that represented by one species and one genus. The highest genera number during the study period were Cymatopleura, Eunotia, Nitizschia, Cymbella and Gomphonema. Numbers of epiphytic algae varied in months and sites due to the host plants. The highest total number was 31039 ×104 cell/ L of fresh weight was recorded at site 1 during April, 2012 on leaves of Ceratophyllum demersum plant, while, the lowest total number was103×104cell/L of fresh weight which was recorded at site. 2 during June, 2012 on shoot of Potomogeton pectinatus. Many species of epiphytic algae were different among the study sites; the highest number was 148 species in Ceratophyllum demersum recorded 93 species on the shoot and 110 species on the leaves, while, the lowest number was 148 species on P. pectinatus recorded 36 on the root 36 and 52 species on the shoot and 60 species on the leaves. The result of study confirm that some of epiphytic algae were found at the most plant parts and different hosts, such as Anabaena cylindrical A. diolum, Lyngba aestuarii, Microcystis aeruginosa, Cosmacladium tubetculatum, Scenedesmus quadricauda, Palmodictyon, Mougeeotia, Pithophora oedogonia. Results showed that, some species favor some parts of host plant e.g Anabaena cylindrica was the most dominated on the Myrophyllum verticillatum and P.australis.Schizothrix tinctoria was dominated on the shoot of Phragmites australis while, algae Nostic linkia dominated on the shoot of Typha domengensis. Algae Ankistrodesmum falcatus, Pyramimonas tetrarhnchus ; Tetraspora cylindrical were dominated on the shoot of Potomogeton pectinatus. There were only seven diatom taxa common encountered on all plant part e.g. Cyclotella bodanicavar var. michiganensis on the shoot of Myrophyllum verticillatum. Fragilaraia capucina var. mesolepta, Cocconeis placentula and Achanthes affinis were dominated on the shoot of Phragmites australis, it was also found that, Navicula miniscula present on leaves of Potomogeton pectinatus and Ceratophyllum verticillatum. Algae N. notha and N. odioas were found on Myrophyllum verticillatum leaves. Ten species were recorded for the first time at this study in Iraq from phytoplankton and epiphytic algae from the period of March, 2012 to February, 2013 : one species of Cyanophyta epiphytic algae Anacystis nidulans ;one species of chlorophyta epiphytic Trentepohlia aurea ; four species of phytoplankton Bacillariophyta centrales : Melosira jurgensi; M. undulata ; Stephanopyxis turris ; Thalassiosira anguste - lineata ; T.decipiens and four species of epiphytic Baciliariophyta pennales : Achanthes flexella; Amphora bullatoides ; Asterionella formosa ; Navicula notha.Five diversity indices : relative abundance, Species richness; Shanon - Weiner diversity ; Jaccard similarity index and Sorinson similarity index were calculated in this study. Relative abundance index for phytoplankton was 44.5 at site 3 in April, 2012 while, epiphytic algae recorded the highest value was 91.6 on the shoot of C.demersum at site 1 in February, 2013 ; on the roots and leaves of T.domengensis in sites 2 and 3 were 66.6 in March, 2012 and 36.36 in June, 2012 on the leaves the same of plant. The highest value of species richness of phytoplankton was 21.9 at site 3 in April , 2012while, for epiphytic algae was 18.3 on the leaves of M.verticillatum and 9.0 on shoot of P.pectinatus at site 4 in March, 2012; on the leaves of C.desmersmum was 12.3 at site 2 ; on the shoot of M.verticillatum plant was the highest value at site 1 on May and June, 2012, while, on leaves and shoot of P. australis plants was the highest value in May and July, 2012 at site 2 and on root of P. australis and shoot of P. pectinatus at site 4 on August, 2012and February, 2013 at site 3, respectively. Results cleared a similarity with high value of Jaccard and Sorenson indices ranged between 3.2 to 50.0 and 55.87 to 153.21 respectively, while, the value of Shanon - wiener diversity index was ranged between 0 - 18.3 as high value which were 4.6 of M. verticillatum plant leaves at site 1 for May and June, 2012 and at low value during the period of study at sites 2, 3 and 4 for most plant parts. A statistical analysis was done using the canonical correspondence analysis(CCA).

دراسة عدد من ملوثات الهواء وتاثيراتها البيئية في منطقتين مختارة من جانب الرصافة في بغداد == Study of Several Air Pollutants And Their Environmental Effects In Two Regions In Al - Rusafa Site In Baghdad

Author name: شيماء هادي حمادي الدليمي
Supervisor name: محمد نافع علي العزاوي
General topic: Biology
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: Several air pollutant concentrations such as Suspended Particulate Matter (SPM), carbon oxides (COx), sulfur dioxide (SO2), nitrogen oxides (NOx), methane (CH4), ozone (O3) and some heavy metals such as lead (Pb) , chromium (Cr), cadmium (Cd), and nickel (Ni). Were measured in selected areas of the Rusafa in Baghdad, Anda’lus square (as a commercial site) and Wazeria district (as industrial site).The results showed that the concentration of air pollutants from gases, SPM (NO2, CO, SO2, and SPM) and heavy metals (Pb, Cr, Cd, and Ni) were exceeded globally and locally permissible limits in both study sites, while the concentration of O3, CO2 were within the globally and locally standard limits in both study sites. Commercial site had recorded higher concentrations of (CO2, SPM, Pb) than those of industrial site. While the industrial site had more pollution with (NO, NO2, CO, CH4, Cr). Results showed a relationship between climate factors and air pollutants, where windspeed, temperature, and relative humidity had influenced on the concentration of air pollutants.Median Lethal Concentration (LC50) to nitrogen dioxide gas was identified, by exposing a community of 30 adult male mice. The mice weights were between 23 - 31gm and their age was 8 - 12 weeks. The mice were randomly divided into five groups (6 male of each group). The exposure periods were 20, 40, 60, 80, 100 minutes using different concentrations 50, 100, 150, 200 ppm.The results showed a higher mortality during 150 and 200 ppm concentrations, for exposure periods of 80 and 100 minutes, but other concentrations have not been recorded. LC50 was calculated 161.86 ppm for 80 minutes and 110.53 ppm for 100 minutes.

دراسة التاثيرات الحادة والمزمنة للمبيد العشبي - 4, 2 دايكلوروفينوكسي اسيتك اسد في نوعين من اسماك الكارب == Study The Acute And Chronic Effects of The Herbicide 2, 4 - Dichlorophenoxy Acetic Acid In Two Species of Carp Fish

Author name: ضحى زكي السويفي
Supervisor name: احمد جاسم محمد العزاوي
General topic: Biology
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: تضمنت الدراسة الحالية التاثيرات السمية الحادة والمزمنة لمبيد 2, 4 - d في نوعين من اسماك الكارب (الاعتيادي والعشبي)، استعمل في دراسة التاثيرات الحادة عدة لكلا النوعين قيد الدراسة وكانت ((170, 165, 160, 155, 145, 140, 130 و(140, 130, 115, 95, 70)ملغم/لتر ع | This study included acute and chronic effects of 2, 4 - d pesticide in two species of carp fish (Cyprinus carpio and Ctenopharyngodon idella) using several concentrations for the two carp fish species that were (130, 140, 145, 155, 160, 165, 170) and (70, 95, 115, 130, 140) mg/l respectively for 96 hours, to determine the median lethal concentration (LC50) and the behavioral changes was used as a standard of those effects. Whereas three concentrations (20, 40 and 60) and (10, 15, 25) mg/l respectively for the two carp species were used in the chronic exposure for six weeks. The behavioral, histological and hematological changes were used as a standard to observe these effects through the study period. The value of LC50 for common carp fish were 157.77, 157.25, 156.41 and 152.62 mg/l. For grass carp, LC50 were 115.92, 114.92, 112.94 and 96.52 mg/l for 24, 48, 72, 96 hrs of exposure to 2, 4 - d pesticide concentrations respectively.Behavioral changes were recorded more effects in high concentrations than in low concentrations. To discover the toxic effects of this substance on fish, many parameters were used. They included the clinical symptoms by erratic swimming, hyperactivity, loss of equilibrium with respiratory effects such as rapid gill movement and swam near the water surface. While in chronic effects, blood parameters were changed in Red Blood Cell R.B.C., White Blood Cell W.B.C., Packed Cell Volume P.C.V., Haemoglobin Hb and liver enzyme (GPT & GOT).Values elevated significantly according to the pesticide concentration (P?0.001) and exposure periods (P?0.05) in comparison with control. The histological examination of the gills, liver and kidney of the common and grass carp fish after chronic exposure to 2, 4 - d herbicide showed pathological changes and alterations such as fusion of the secondary lamella, epithelial lifting, blood congestion, epithelial hypertrophy of the lamellar epithelium and epithelial necrosis. In the liver, pathological changes were seen, including hepatocytes hypertrophy, cytoplasmic vacuolation, blood congestion and cellular necrosis. Degenerative changes of the renal epithelium, necrosis in renal tubules and occlusion of the tubular lumen where the pathological alterations in the kidney.

الكشف عن بكتريا الكوكسيلا بيرنتي في حالات الاجهاض في الانسان والمجترات الصغيرة في محافظة ذي قار == Detection The Role of Coxiella Burnetii In Abortion of Human And Small Ruminants In The Thi - Qar Province

Author name: عباس دخيل مطر جبر الجوراني
Supervisor name: عبد الله كاظم هندي | محمد عبد الله جبر
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: الحمى المجهولة من الامراض الواسعة الانتشار في العالم تحدث بسبب جرثومة الكوكسيلا بيرنتي.هذه الجرثومة تسبب عدة امراض الاجهاض هو الاكثر حدوثا. المخاطر البيولوجية وانشار هذه البكتريا على النساء المجهضة والحيوانات في العراق غير معروفة. لذلك هدفت هذه الدراسة ال | Query fever is a worldwide distributed disease caused by Coxiella burnetii bacteria causes several disease main of this disease is abortion, the biological hazard and prevalence of this bacterium on the aborted woman and small ruminants are not known in Iraq. Therefore this study was aimed to detection and isolation of Coxiella burnetii as a causative agent of abortion in woman and female of small ruminants.352 samples were collected includes human samples and animals samples. A total of 120 blood aborted women, 7 breast milk samples, 20 placental samples and 50 blood samples from normal women as control groups, these samples collected from Bent Al - Huda hospital in Thi - Qar province. Animals samples, a total of 80 aborted animal blood samples, 15 milk samples, 10 placental samples and 50 blood samples, these samples from normal animals as controls group, these samples collected from veterinary hospital in Thi - Qar province. The results of this study showed a high incidence of abortion occurs in first trimester of gestation (41.666%) and high incidence in rural regions (64.16%) and also age group from 21 to 30 years old (50%).The methods used for detection of Coxiella burnetii includes serology tests, polymerase chain reaction (PCR) technique for confirmation serological test and isolation on embryonated chicken eggs and detection by PCR technique. Out of the 120 women serum samples analyzed by enzyme ELISA, the results of percentage of anti - Coxiella burnetii IgM and IgG in human samples were 36 (30 %). The percentage of anti - C. coxiella IgM in human samples were 10 (8.333%), while the percentage of anti - C. Coxiella burnetii IgG in human 26(%21.667%).. In animals total of (80) serum samples, the percentage of anti - C. coxiella IgM and IgG in animals' serum samples were 31(38.75%) The percentage of anti - Coxiella burnetii IgM in animals 10 (12.5%), while, the percentage of anti - C. coxiella IgG in animals are 21(26.25 %). PCR technique used for identification of Coxiella burnetii in human and animals samples by targeting three genes including outer membrane protein (com1 and com2), 16S rRNA and transposase insertion element (IS1111) genes. In human blood samples the com1 and com2 genes detected in 23of 120 (19.166%) samples and in breast milk samples 1 of 7 (14.28%). and not detected in placental samples. The 16S rRNA gene was detected in 16 of 120 blood samples (13.33%) and in breast milk samples and placental samples were not detected. The IS1111 gene was detected in 9 of 120 blood samples (7.5%) in human blood samples, also were not detected in milk and placental samples.. In animals blood samples the com1 and com2 genes were detected in 19 of 80 blood samples (23.75%) and were not detected in milk and placental samples. The 16S rRNA gene detected in the same percentage of com1 and com2 genes 19 of 80(23.75%) and in the milk samples and placental samples not detected. The IS1111 gene detected in 10 of 80 (12.5%) in animal blood samples, also were not detected in placental samples. An isolation of Coxiella burnetii which identified by ELISA and PCR via inoculated Coxiella burnetii buffy coat samples in embryonated chicken eggs from 6 to7 days old and then completed an incubated to 10 - 15 days, harvested yolk sac contains then detecting Coxiella burnetii by PCR. The results of PCR after inoculation of (43) samples were positive in PCR (100%). Statistical analysis revealed no significant different between ELISA test, PCR and isolation results in human and animals samples. These mean that we can use the ELISA in the primary diagnosis. The correlation coefficient was highly significantly between human and animal samples at 0.01%.
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