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عزل وتشخيص البكتريا المرضية مع ايلاء اهتمام خاص للبكترياStaphylococcus auerus المرافقة ل Cutaneous Leishmaniasis في محافظة ذي قار == Isolation and Identification Pathogenic Bacteri with Special Regard to Staphylococcus auerus Associate with Cutaneous leishmaniasis at Thi - Qar Province

Author name: رضاء الله مرتضى الاعظمي
Supervisor name: قاسم حسن وداعة
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: English
University location: Dhi Qar
First pages:
Abstract: The present study is designed to isolated and identification the pathogenic bacteria associated with Cutaneous leishmaniasis. Cutaneous leishmaniasis (CL) is a parasitic disease characterized by single or numerous ulcerations. This was study performed in Iraqi in Shatra general hospital and Al - hussein teaching hospital in Thi - Qar province 2016 - 2017.Total of 370 samples of suspected patients were taken and after examining them using geimsa stain , the positive were 186 males and 126 females then sterilize the area surrounding for ulcer , all samples were taken to (swab transport media) ,culture to MacConkey agar and blood agar after 24 hr of incubation at 37C ,after diagnosed by biochemical testing then species determined by API system. The positive results on culture media 92/312 , males 62 (67.4%) , female 30 (32.6 %).The total bacteria isolated from the lesions were in males and female staph auerus 52 cases (56.5%), Escherichia coli 8 cases(8.6%) , Bacillus cereus 6 cases(6.5%) , Pseudomonas. aeruginesa 5 cases (5.4% ), Strep. Pyogenes 6 cases(6.5%) ,Strepto.agalactiae 3 cases(3.3%).While other that isolated in males only and did not appear in females were aerobic bacteria ,Listeria moncytogenes 3 cases(3.4%) , Actinobacteria .spp 2 cases(2.2%) ,Klebsiella. Pneumonia 2 cases (2.2%) , Rodococcus .equi 1 cases (1.1%) , and anaeroberia bacteria ,Peptococcus niger 2 cases (2.2%) ,Peptostreptococcus .spp 2 cases (2.2%) .Then find bacteria that more presence more with cutaneous Leishmaniasis ,were it was staph. aureus therefore it were objected study antibiotic resistant .The present study demonstrates that Staph. aureus XIV isolates were resistant to methicillin 50 (96.15%), penicillin 48 (92.30%) , Clindamycin 37 (71.15%), ciprofloxacin 30 (57.69%) , Gentamicin 30 (57.69%),Amoxicalave 29 (55.76%), Azithromycin 25 (48.07%) , Amoxicillin 22 (42.30%), Tetracycline 21 (40.38%), Rifampin 10 (19.23%) and Vancomycin all staph .auerus are sensitive to Vancomycin The all 52 Staph. aureus isolates were further examined using polymerase chain reaction (PCR) for detection of (16SrRNA ,mecA and PVI gene ). 16SrRNA gene which were responsible for diagnosis ,where all isolates were positive to was 52\52 (100%) , mecA gene which were responsible for methicillin resistance this was detected in 52\52 (100%) . of Staph. aureus isolates and a part of virulence factors PVL gene was detected in 46/52(88.46%) of Staph. aureus isolates which are responsible to kill the leukocytes of human and other animals.

تنقية جزئية وتوصيف Biosurfactant من بكتريا Bacillus subtilis وتاثيرها على نمو بعض عزلات البكتريا والفطريات

Author name: غـفـران فـلـيـح عـبد الـحـسـن عـزيـز الجـبـوري
Supervisor name: فاطمة عبد الحسين مجبل التميمي
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: تم الحصول على 102عزلة من العزلات البكتيرية من 40 عينة من عينات الترب الملوثة بالنفط من مختلف المناطق ورشة عمل السيارات، محطات وقود السيارات، مصافي النفط ولخمسة مناطق مختلفة في العراق . خضعت كل هذه العزلات الى الفحص المجهري والخصائص الزرعية ووجد ان 80 عزلة منها تنتمي الى جنس Bacillus ، هذه العزلات خضعت ايضا لاختبارات بايوكيميائية وشخصت بناءا على دراسة rDNA 16S من قبل مجموعتين من البرايمرات (andB16SF B16SR) و(1492R and 27 F) اذ وجد ان 51 عزلة منها تعود الى Bacillus subtilis . تم فحص جميع هذه العزلات من حيث قدرتها على انتاج biosurfactant عن طريق فحص النشاط انحلال الدم على وسط دم الاغنام حيث وجد ان جميع العزلات كانت من النوع تحلل الدم بيتا حيث تم فحصها اعتمادا على قياس الشد السطحي بعد زراعتها في Jacques medium اظهرت النتائج ان 46 عزلة من 51 عزلة كانت منتجة biosurfactant , وقد تم اختيار ثمانية منها تميزت بانتاجها لهذا المركب وهي (S1,S2,S3 S4,S5,S6,S7,S8) حيث كانت العزلة B. subtilis S4 هي الاكفا في الانتاج لذلك اختيرت في الدراسات اللاحقة . تم استخلاص Biosurfactant الخام من العزلات المختارة بواسطة وتنقيته جزئيا باستخدام طريقة Ion exchange chromatography باستخدام DEAE - Cellulose تلاها طريقة Gel filtration chromatography باستخدام Sepharose - 6B . تمت دراسة خصائص المركبات المنقاة واظهرت النتائج ان الوزن الجزيئي biosurfactant التي تنتجهاB.subtilis S4 تراوح بين (1036 - 1058دالتون) من خلال جهاز HPLC - TOF - MS . اظهرت النتائج ان الحد الاقصى لانتاج biosurfactant من العزلة تم بطريقة استخدام زيت الزيتون (3٪) وكبريتات الامونيوم (0.3٪) وKH2PO4 (1.5) غم / لتر، وبدرجة حرارة 30 مº والاس الهايدروجيني (7) وفترة الحضانة لمدة 72 ساعة. وقد تحققت اعلى نسبة للـ biosurfactant بعد مكملات الظروف المثلى الى 0.3 غرام / لتر من الوسط الزرعي . تم اختبارالنشاط البكتيري والفطري للعزلات الثمانية ضد بعض الجراثيم المسببة للامراض، وهي Staphylococcus aureus,Streptococcus pneumonia, Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis, Candida albicans , Candida tropicalis , Candida krusei , Rhizopus oryzae , Aspergillus niger وكانت العزلة الاكثر فعالية هي B.subtilis S4 التي اظهرت وجود نشاط ضد كل مسببات الامراض ماعدا S.pneumonia ,P.aeruginosa ,C.krusei . كما بينت النتائج ان مستخلص العزلة B.subtilis S4 اظهر اعلى تثبيط نموعند التركيز 1500 مايكروغرام / مل وصل الى 24 ملم ضد E.coli، 23 ملم ضد K.aerogenes، 21 ملم ضد S.aureus، 15 ملم ضدC.albicans، 14 ملم ضد P.mirabilis، 11 ملم ضد C.tropicalis، وتثبيط نمو الفطريات، حيث وصل معدل النمو الشعاعي الى 31.9 ملم ضد A.niger و9.7 ملم ضد R.oryzae عند التركيز 2 ملغم / مل. كذلك اظهرت النتائج ان سمية المستخلص B.subtilis خارج الجسم الحي على ذكور الجرذان البيض بلغت حوالي 922 ملغم / كغم وتشير اذ ان الاعطاء اليومي biosurfactant لم تظهراي حالة وفاة في اي جرعة ، ولم تلاحظ اي تغييرات غير عادية في السلوك اوتاثيرات سمية خلال فترة 28 يوما من العلاج. واثبت التحاليل انه ليس هناك اي تاثير سلبي على معايير الدم الفسلجية وهذا يؤكد صحة هذه المستحضرات الحيوية للاستخدام . | About 102 bacterial isolates were obtained from 40 oil contaminated soil samples from various automobile work shop ,cars fuel stations ,oil refineries of five different areas in Iraq. Microscopic examination and cultural characteristics for all isolated were investigated , 80 isolates were found to be related to the genus Bacillus , Bacillus isolates were subjected to the biochemical tests and molecular identification based on the 16S rDNA by two sets of primers (B16SF and B16SR) , (27F and 1492R) of these 80 isolates revealed that 51 of the identified isolates belonged to Bacillus subtilis.All these isolates were screened for their ability for biosurfactant production through blood haemolysis activity on sheep blood agar indicated that all isolates were β - hemolysis while screening depended on measuring the lowering surface tension of cell free supernatant after cultivation in jacques medium which referred that 46 of 51 isolates were biosurfactant producers. Eight isolates were selected for the best biosurfactant producer isolatesCrude biosurfactants produced by the selected isolates were extracted by acid precipitation followed by partially purified with dichloromethane followed by purification and characteristics, the results showed that the molecular weight of biosurfactant produced by B.subtilis S4 ranging between 1036 - 1058 Da . Optimum conditions for biosurfactants production from B. subtilis S4 were determined. Results showed that maximum biosurfactant production from this isolate was achieved by using 3% olive oil , 0.3 % ammonium sulfate and 1.5 g / l Potassium dihydrogen phosphate ,at pH7,30 ºC and incubation period for 72 hrs. Maximum biosurfactant production was achieved after the supplementation of the optimum conditions was 0.3 g/l of culture medium .All of the eight isolates were tested for antimicrobial activity against twelve pathogenic microorganisms : Staphylococcus aureus ,Streptococcus pneumonia,Pseudomonas aeruginosa ,Escherichia coli ,Proteus mirabilis Klebsiella aerogenes,Candida albicans,C.tropicalis,C. krusei , Rhizopus oryzae , Aspergillus niger and Penicillium notatum.The most effective isolates were B.subtilis S4 which showed antimicrobial activity against some tested pathogens except S.pneumonia ,P. aeruginosa ,C.krusei and P.notatum.The results indicated that S4 culture extract showed high growth inhibition zone in concentration 1500 µg /ml reached to 24 , 23, 21, 15, 14 and 11 mm against E.coli , K.aerogenes , S.aureus , C.albicans, P.mirabilis,C.tropicalis respectively and high reduction in of radial growth of the fungi reached to 31.9 and 9.7 mm in A.niger and R.oryzae respectively at 2 mg /ml concentration .Study in vivo potential toxicity of B.subtilis lipopeptide biosurfactant towards male rat was evaluated. An LD50 value was determined to be about 922 mg / kg. Results show that daily administration of biosurfactant did not show any death cases at any dose. Also, no unusual changes in behavior and no intoxication were observed during the 28 days period of treatment. Analysis proved that there were no significant adverse effect on hematological parameters and this confirms the validity of those biopharmaceuticals on body of mammals.

دراسة جزيئية ومناعية لفايروس النورو والفايروس الغدي نمط 40 و41 في الاطفال المصابين بالاسهال == Molecular and Immunological Study of Norovirus and Adenovirus types 40 and 41 in Diarrheic Children

Author name: رمله احمد محمد حسن العميدي
Supervisor name: مهدي حسين محيل العمار
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Najaf
First pages:
Abstract: هدفت هذه الدراسة الى التحري عن فايروسي النورو والفايروس الغدي نمط 40 / 41 في الاطفال المصابين بالاسهال واجراء تحليل لمعدل الاصابة وطبيعتها ودراسة الطبيعة الجزيئية للفايروسين وكذلك التحري عن قدرة الفايروسين على حث الجهاز المناعي وتحديد بعض الحركيات الخلويه عند الاطفال المصابين بالفايروسين.بالاضافة الى دراسة بعض ملامح الاصابه مثل تغاير الفصول والعمر وتحديد افضل الطرق لتشخيص الفايروسين. اجريت الدراسة الحالية في محافظة النجف الاشرف /مستشفى الزهراء التعليمي للولادة والاطفال خلال الفترة من كانون الثاني2014 الى كانون الاول 2014 والتي تضمنت 314 عينه من البراز والدم من الاطفال المصابين بالاسهال والذين تتراوح اعمارهم بين شهر الى خمسة سنوات.حيث اعتمد التحري في عينات البراز استخدام اختبار الكروماتوغرافيا المناعي السريع للكشف عن المستضدات الفايروسية للفايروسين النورو والغدي نمط 40 / 41.كما تم تاكيد العينات الموجبة بواسطة تقنية PCR Real Time لفايروس النورو تقنية PCR للفايروسالغدي نمط40 / 41،والتي اظهرت فيها النتائج بان معدل الاصابة كان 11.7% لفايروس النوروو8.9% للفايروس الغدينمط 40 / 41.كذلك تم فحص العينات الموجبة بواسطة المجهر الالكتروني والتي بينت مظهر للفايروسين في عينات البراز . وتشير الدراسة الى ان التقنيات الجزيئية المستخدمة في فحص العينات هي الاكثر كفاءة للتشخيص الروتيني للفايروسين مقارنة مع المجهر الالكتروني لتشخيص عينات الاسهال.وطبقا للفئات العمرية ،اظهرت النتائج ان الفئة العمرية 13 - 24 شهر سجلت ارتفاع عالي للاصابة بالفايروسين النورو والغدينمط 40 / 41.الحالات الايجابية كانت بين الاطفال الذين يتغذون على الحليب الجاف الاصطناعي (31 حاله) مقارنة مع الرضاعة الطبيعية من الام (14 حاله).اما نتائج الاعراض السريرية في الاطفال المصابين بالفايروسين فاظهرت ان كل الحالات تبين وجود اسهال من النوع المائي المخاطي وبنسبة 100% يليها الالم البطن بنسبة 94.5% و82.1 %،التقيؤ بنسبة 81 % و78.5 % واخيرا الحمى بنسبة 78.3% و71.1 % لكلا من النورو والغدي نمط 40 / 41 على التوالي. كما كشفت الدراسة الحالية بان معدل الاصابة المرتفع لفايروس النوروكان من شهر كانون الثاني الى اذار والتي كانت بنسبة 81%من الحالات الموجبة ، اما بالنسبة لفايروسالغدينمط 40 / 41كان معدل الاصابة المرتفع من شهر كانون الثاني الى نيسان والتي كانت بنسبة 89.2% من الحالات الموجبة. كما اظهرت النتائج وجود ارتفاع كبيرفيالحركيات الخلويه (السايتوكينات) لمصل الاطفال المصابين مقارنة مع السيطرة. وفقا للفئات العمرية ،اظهرت الفئة( 49 - 60) شهر ارتفاع عالي في مستويات الانترفيرون كاما ، الانترلوكين - 6((IL - 6 والانترلوكين - 12 (12 IL - (حيث كانت للفايروس النورو(90.8, 56.7, 84.3) جزء من الغرام /مل على التوالي،بينما كانت لفايروسالغدي(106.5, 59, 87.5)جزء من الغرام /ملعلى التوالي مقارنة مع مجموعة السيطرة. | Norovirus and adenovirus types (40 and 41) are the important causes of gastroenteritis infections in children worldwide. The present study was designed to determine the incidence and nature of infection of norovirus and adenovirus types (40 and 41) at molecular and immunological levels, as well as some features such as seasonal variation , age distributions and detected the most effective and suitable method for diagnosis of the two viruses . The study was carried out in Al - Najaf province, in AL - Zahra teaching hospital for maternity and children, during the period from January, 2014 to December, 2014. Stool and blood samples were collected from 314 children with diarrhea, their age range (from 1months to 5 years). Immunochromatographic assay for norovirus and adenovirus used to detect their antigens in stool samples, the positive results were confirmed by reverse transcriptase real time PCR technique for norovirus and polymerase chain reaction technique for adenovirus types (40 and 41), which showed incidence of 11.7% and 8.9% for norovirus and adenovirus, respectively. Transmission electron microscopy examination gave clear positive norovirus and adenovirus types (40 and 41) appearance in diarrheal stool samples .The study indicates that molecular methods are most suitable and sufficient tests for routine diagnosis of norovirus and adenovirus types (40 and 41) as compared to transmission electron microscopy analysis for diarrheal samples. According to age groups, the results showed that the majority of infections with norovirus and adenovirus were recorded among age group (13 - 24) months. The positive cases were highly among infants fed with bottle fed (31 cases) compared with infants fed with breast fed (14 cases). Regarding the clinical features of children with viral diarrheal infections , the results showed that all of the cases of both viruses complained of watery or mucosal consistence stool (100%) followed by abdominal pain (94.5%) and (82.1%), vomiting (81%) and (78.5%) , and fever (78.3%) and (71.4%) for norovirus and adenovirus positive children respectively. The present study also revealed that a higher incidence of norovirus was detected from January - March 2014, when it was found in 81% (30/37) of the positive cases, whereas the incidence of adenovirus was higher from January - April 2014, during which it was found in 89.2% (25/28) of the positive cases. The current study for cytokines profile detection showed that significant elevation in patients with norovirus and adenovirus than control. The age groups 49 - 60 months have shown a high level in cytokines Interferon gamma, Interleukin - 6 and Interleukin - 12 with concentration were (84.3, 56.7, 90.8) pg./ml , respectively for norovirus while adenovirus were (87.5, 59, 106.5) pg./ml , respectively as compared with control group . Conclusion of the study shows incidence norovirus genotypeII (GII) and adenovirus types (40 and 41) by rapid chromatographic test from infected children in Al - Najaf province. The study indicates that molecular techniques are most suitable and sufficient tests alternatively for transmission electron microscopy when there is good facility and both can replaced by rapid chromatographic test . Interferon gamma, Interleukin - 6 and Interleukin - 12 were increased in all patients with norovirus and adenovirus infections and showed high level in age group (49 - 60) months

دراسة علاقة مجاميع الدم ABO مع البين ابيضاضي 18 المرتبط بالبروتين الفا والبين ابيضاضي 18 مستقبل البيتا في النساء العراقيات العربيات المصابات بالسكري من النوع الثاني == Studying the Association of ABO Blood Groups with IL - 18BPa & IL - 18R beta in the Iraqi Arab Females with Diabetes Mellitus Type 2

Author name: زينب فاضل عبد الغفور
Supervisor name: اسماء محمد صالح المهيدي
General topic: Biology
Specific topic: zoology - Genetics
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: داء السكري كمرض التهابي يرتبط مع العديد من العوامل الالتهابية لذلك تهدف الدراسة الحالية لحساب تركيز العامل البين ابيضاضي 18 المرتبط بالبروتين الفا والعامل البين ابيضاضي 18 مستقبل البيتا مع عوامل الخطورة التقليدية والتي تشمل المقاييس الفيزيائية مثل متوسط محيط الخصر ومؤشر كتله الجسم وعوامل البيو كيميائية مثل الانسولين , مقاومة الانسولين , مستوى السكر في الدم في حاله الصيام ,مستوى الهيموغلوبين السكري وملف الدهون وفي الوقت نفسه دراسة ارتباطهم مع نظام الدم ABO في النساء العراقيات العربيات المصابات بالسكري من النوع الثاني ومن اجل معرفة تاثير ذلك مع عوامل اخرى التي تعتبر كمؤشر او مطور لمرض السكري من النوع الثاني . وشملت الدراسة الحالية 340 مريضا من النساء العراقيات العربيات المشخصات حديثا بالسكري من النوع الثاني 200 من النساء الاصحاء اختبرت للتكرار الاليلي والمظهري ,ومن هؤلاء 60 مريضة اختبرت للدراسة المناعية والكيميائية مقارنة مع 28 من النساء الاصحاء .الاختبارات المناعية بواسطة استخدام تقنية الانزيم المرتبط المناعي, اما المقاييس الكيميائية باستخدام الاساليب الانزيمية واللونية, وتم تقسيم المرضى والسيطرة حسب مجاميع الدم الى اربعة مجاميع ثانوية (A , B ,AB ,O) وفقا لنوع فصائل الدم التي كشف عنها بواسطة الاختبارات المصلية القياسية .اظهرت البيانات الحالية : 1 - زيادة معنوية في المصل العامل البين ابيضاضي 18 المرتبط بالبروتين الفا في المرضى الحاليين ,في حين لم تظهر اختلافات معنوية في مستوى مصل العامل البين ابيضاضي 18 مستقبل البيتا .2 - زيادة معنوية في متوسط العامل البين ابيضاضي 18 المرتبط بالبروتين الفا مع زيادة العمر في كل من المرضى ومجموعه السيطرة, في حين العامل البين ابيضاضي 18 مستقبل البيتزااد في المجموعة الاقل من 40 سنة وانخفض مع زيادة العمر في كل من المرضى ومجموعه السيطرة .بالاظافة الى زيادة كل عوامل الخطورةالاخرى.3 - تركيز كلا العاملين العامل البين ابيضاضي 18 المرتبط بالبروتين الفا والعامل البين ابيضاضي 18 مستقبل البيتا يزداد بشكل غير معنوي تدريجيا في كل المرضى مع زيادة مدة المرض ونفس النتيجة لمقاومة الانسولين.4 - اظهرت نسبة الهيموغلوبين السكري اقل من 7.3 % زيادة كبيرة في متوسط العامل البين ابيضاضي 18 المرتبط بالبروتين الفا , العامل البين ابيضاضي 18 مستقبل البيتا وتنخفض تدريجيا مع زيادة نسبة الهيموغلوبين السكري .5 - الافراد الذين كانوا يحملون فصيلة الدم B اظهروا اعلى معدل لمتوسط العامل البين ابيضاضي 18 المرتبط بالبروتين الفا , الانسولين ومقاومة الانسولين .6 - المرضى الذين كانوا يحملون فصيلة الدم B والاصحاء الذين يحملون فصيلة الدم A اظهروا اعلى معدل لمتوسط العامل البين ابيضاضي 18 مستقبل البيتا .7 - يعتبر العامل البين ابيضاضي 18 المرتبط بالبروتين الفا والعامل البين ابيضاضي 18 مستقبل البيتا كعوامل خطورة مستقلة في النساء العراقيات العربيات المصابات بالسكري من النوع الثاني والتي تدعمها غياب العلاقة المعنوية بين العامل البين ابيضاضي 18 المرتبط بالبروتين الفا والعامل البين ابيضاضي 18 مستقبل البيتا وجميع عوامل الخطورة التقليدية الاخرى .8 - هنالك علاقة ايجابية بين مستويات العامل البين ابيضاضي 18 المرتبط بالبروتين الفا وخطورة السكري من النوع الثاني والذي قد يعتبر كمؤشر لحدوث المرض , في حين ان مستويات العامل البين ابيضاضي 18 مستقبل البيتا قد يكون مؤشر لتطور المرض .مزيد من الدراسات اللازمة لفهم العلاقة بين مجاميع الدم , عوامل الالتهابية ومخاطر السكري من النوع الثاني . | DM is considered as inflammatory disease associated with many inflammatory factors. As such the present study aims to investigate the concentration of IL - 18 binding protein alpha (IL - 18BPa) and IL - 18R beta with classical risk factors which include Anthropometric risk factors like Age, Central Obesity (CO) and body mass index (BMI), biochemical factors like Insulin , Insulin Resistance (IR), Fasting Blood Glucose ( FBG), Glycosylated Hemoglobin (HbA1c) and lipid profile. Besides, the study aims to studying their association with ABO blood system in the Iraqi Arab female patients with diabetes mellitus type 2 in order to figure out their effect with other factors as predictor or developer for diabetes mellitus type 2. The present study included 340 Iraqi Arab female patients newly diagnosed with DMT2 and 200 healthy individuals tested for phenotype and allele frequency. From those, 60 patients were tested for the immunological and chemical where compared to 28 healthy individuals. Immunological tests by using ELISA kits. While Chemical parameters using enzymatic and colorimetric methods. The study groups (patients and control) were divided into four sub groups (A, B, AB and O) according to the class of blood groups which were tested by using standard serological procedures. The present data showed : 1 - A significant increase in the serum level of IL - 18BPa in the patients of the present study, while there was no significant difference in the serum level of IL - 18R beta. 2 - A significant increased in mean of IL - 18BPa with increased age in both patients and control groups. While IL - 18R beta showed increase at group less than 40 year and decreased with increasing age in both patients and control group. Besides increased all other risk factors. 3 - The levels of both IL - 18BPa and IL - 18R beta were gradually non significantly increased the level in each patients group with an increased duration of disease and the same for IR. 4 - Patients with HbA1c less than 7.3% showed a significant increase in mean of IL - 18BPa and IL - 18R beta and decreased gradually with the increase of HbA1c. 5 - Patients and control subjects who carried blood group B had the highest mean of IL - 18BPa, Insulin and Insulin resistance. 6 - Patient subjects who carried blood group B and control subjects who carried blood group A showed the highest mean of IL - 18R beta. 7 - IL - 18BPa and IL - 18R beta act as independent risk factors in Iraqi Arab females with DMT2 which supported by the absence of significant correlation among IL - 18BPa, IL - 18R Beta and all others classical risk factors. 8 - A positive relation between levels of IL - 18BPa and risk of DMT2. This may be an indication of inflammation for newly diagnostic diabetic patients, while Serum levels of IL - 18R beta might be a predictor marker of disease progression. Further studies are needed to understanding the relationship between blood groups, inflammatory markers and risk of DMT2 in healthy population.

استخدام البكتريا المختزلة للنترات المعزولة من مياة انتاج حقول النفط في البصرة في السيطرة على الانتاج الحيوي لغاز كبريتيد الهيدروجين المنتج بفعل البكتريا المختزلة للكبريت == Using of Nitrate Reducing Bacteria Isolated From Produced Water of Oil Fields in Basra in Control of Biogenic Hydrogen Sulfide Produced by Sulfate Reducing Bacteria

Author name: وجدان حسين عبد الصاحب التميمي
Supervisor name: كوثر هواز مهدي
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: تضمنت الدراسة الحالية استخدام تقنية الاقصاء بالتنافس الحيوي للسيطرة على الانتاج الحيوي لغاز كبريتيد الهيدروجين H2S من قبل الجراثيم المختزلة للكبريت في مزارع الدفعة والمفاعل الحيوي, اذ ان اضافة النترات او النتريت يحفز نمو الجراثيم المختزلة للنترات التي تنافس الجراثيم المختزلة للكبريت على المصادر العضوية وتستقصيها. جمعت 40 عينة من مياه انتاج حقول نفط نهران عمر واللحيس في البصرة خلال 6 اشهر للفترة من اب 2013 الى كانون الثاني 2014, عزلت مزارع خليطه من الجراثيم المختزلة للكبريت والمختزلة للنترات من تلك العينات وحسبت اعداد الخلايا لكلا النوعين باستخدام طريقه العد الاكثر احتمالا وقد اظهرت النتائج ان اعداد الجراثيم كانت منخفضة اذ بلغت اعداد الجراثيم المختزلة للكبريت بين7 - 4 خلية/100مل في حين كانت اعداد الجراثيم المختزلة للنترات اقل من 4 - 2 خلية/ 100مل. كما تضمنت الدراسة الحالية ايضا تنقيه للجراثيم المختزلة للكبريت والمختزلة للنترات واجراء التشخيص الجيني بتقنيه التفاعل التسلسلي لانزيم البوليمريز PCR والذي من خلاله تم تضخيم الجين16S rRNA وحدد تتابعه للتشخيص الى مستوى السلالة وقد اظهرت تحاليل المجتمع الجرثومي ان عزلات الجراثيم المختزلة للنترات قد امتلكت تطابقا بنسبة 99% مع الانواع Pseudomonas stutzeri وP. putida وHerbaspirillum huttiense وBacillus licheniformis اما عزلات الجراثيم المختزلة للكبريت فقد اظهرت النتائج انها امتلكت تماثل 99% للانواعShewanella hafniensis وDesulfotomaculum acetooxidans وDesulfosporosinus orientis مع افتراض ان جميع العزلات هي سلالات جديدة عالميا. كما اظهرت نتائج المعاملة بالنترات او النتريت في مزارع الدفعة وجود تاثير مثبط قوي على الجراثيم المختزلة للكبريت اذ لم يزداد مستوى الكبريتيد في جميع التراكيز المستخدمة ( 200 و400 و600 و800 و1000) ملغم/لتر من النترات والنتريت فقد تراوح مستوى تركيز الكبريتيد بين 4.2 و21 ملغم/لتر عند المعاملة مع النترات و23 و5.2 ملغم/ لتر مع النتريت, وتطابقت هذه النتائج مع تركيز الخلايا في جميع القناني المعاملة, اذ تراوح بين 0.26 - 0.001 و0.003 - 0.17 مع النترات او النتريت على التوالي بينما كانت هناك زيادة معنوية في تركيز الكبريتيد الذي بلغ 121 ملغم/لتر وتركيز الخلايا بامتصاصية بلغت 0.84 في عينات السيطرة.كان للجراثيم المختزلة للنترات تاثير مثبط قوي على نمو الجراثيم المختزلة للكبريت وانتاج الكبريتيد عند اضافة المغذيات المشجعة لنموها بمختلف التراكيز, اذ ازدادت فعاليه الجراثيم المختزلة للنترات واستهلكت كل من النترات او النتريت المضاف خلال 3 - 2 يوم من الحضن وكان اعلى تاثير مثبط لانتاج غاز كبريتيد الهيدروجين عند التركيز 1000 ملغم/لتر من النترات اذ اظهرت النتائج وجود انخفاض معنوي في مستوى الكبريتيد الى34 ملغم/لتر في حين كانت اعداد البكتريا 34.8 خلية/مل بعد عشرة ايام من المعاملة. اظهرت نتائج معالجة الحموضة طويلة الامد باستخدام المفاعل الحيوي وجود انخفاض حاد في انتاج غاز كبريتيد الهيدروجين بنسبة 94% بعد اضافة النترات والنتريت خلال فترة 60 يوما من المعاملة ,الاضافة المستمرة للنترات والنتريت بحوالي ( 333ملغم/اليوم للنترات و133ملغم/اليوم للنتريت) ادت الى تثبيط الفعالية الحيوية للجراثيم المختزلة للكبريت وانتاج غاز كبريتيد الهيدروجين, اذ انخفض مستوى الكبريتيد من 155 الى 10 ملغم/لتر واعداد الخلايا اكبرمن 1100 الى 3.5 خلية/ مل بما يعادل 99.6% , بينما ازدادت فعالية واعداد الجراثيم المختزلة للنترات من 1100 الى اكبر من 1100 خلية/مل.اظهرت نتائج معدل تاكل عينات الحديد المطاوع في المفاعل الحيوي بعد 60 يوما ان اعلى معدل للتاكل كان 70.7 ملغم/ سم2/ سنه في المفاعل غير المعامل بالنترات والنتريت بينما انخفض معدل التاكل الى 15.8 ملغم/ سم2/ سنه بعد نفس الفترة من التعرض في المفاعل المعامل وبنسبة انخفاض بلغت 55% مقارنة مع المفاعل غير المعامل. | This study includes the used of Bio Competitive Exclusion technology (BCX) to control biogenic production of hydrogen sulfide (H2S) by Sulfate Reducing Bacteria (SRB) in batch cultures and bioreactors. The injection of nitrate (NO3) and nitrite (NO2) promotes the growth of nitrate reducing bacteria (NRB) which outcompete (SRB) on carbon sources. A total of 40 samples were collected from produced water of oil production facilities in Basra including Nahran Omer and Al - Lahis oil fields in a period time of 6 months from August 2013 to January 2014. Mix cultures of (SRB) and (NRB) were isolated from these samples, the two types of bacteria were enumerated by using most probable number method, the results show that the numbers of both bacteria were generally quite low, the viable count of (SRB) was between 4 - 7cell/100 ml whereas the (NRB) was between <2 - 4 cell/100 ml. This study also includes purification of isolates for both (SRB) and (NRB) and the genetic identification by polymerase chain reaction (PCR) technique through which the universal 16S rRNA gene of 1500 bp is amplified and sequenced for identification to the level of strains. Microbial community analysis showed that isolates of (NRB) were have identity of 99% Pseudomonas stutzeri, P. putida, Herbaspirillum huttiense and Bacillus licheniformis while isolates of (SRB) were have identity of 99% Shewanella hafniensis, Desulfosporosinus orientis and Desulfotomaculum acetooxidans with supposing that all isolates new world strains. The results of the treatment with nitrate or nitrite showed a strong inhibitory effect on (SRB) growth and (H2S) production, sulfide levels do not increase at all concentrations (200, 400, 600, 800 and 1000) mg/l of nitrate or nitrite range between 4.2 - 21 mg/l in treatment with nitrate and 5.2 - 23 mg/l in treatment with nitrite. This is consistent with the concentrations of bacteria in all treatment bottles which range between 0.001 - 0.26 and 0.003 - 0.17 in treatment with nitrate or nitrite respectively, while there is a significant increase in sulfide 121 mg/l and concentration of bacteria 0.84 in control as optical density. (NRB) has a certain inhibitory effect on the growth of (SRB) and (H2S) production when the (NRB) nutrient (nitrate or nitrite 200, 400, 600, 800 and 1000) mg/l were adding , the activity of (NRB) increases after treatment, and it consumed all nitrate or nitrite during 2 - 3 days of incubation, the strong inhibition of (H2S) production is at concentration 1000 mg/l of nitrate where the results showed that there was significant decrease in sulfide level 34 mg/l and number of bacteria, 34.8 cell/ml during 10 days of incubation.Souring control at long term treatment in bioreactors show sharp decrease in production of (H2S) to 94% after injection of nitrate and nitrite during the period of 60 days, the continuous dosing of nitrate and nitrite (333 mg/l/day nitrate and 133 mg/l/day nitrite) inhibited the metabolic activity of (SRB) and (H2S) production severely, the sulfide levels decrease from 155 to 10 mg/l and number of (SRB) from >1100 to 3.5 cell/ml the percent in number decreased was to 99.6%, at the same time activity and numbers of (NRB) increase from 1100 to >1100 cell/ml over the duration of experiment. The results of corrosion rate measurement on mild steel after 60 days showed that the highest corrosion rate was 70.7 mg/cm2/year in control reactor while the lowest corrosion rate was 15.8 mg/cm2/year in treated reactor at the same period time of exposure with percent of decreasing in weight loss to 55% comparing with control reactor.

السيطرة الاحيائية واللااحيائية على نمو الفطر Aspergillus flavus والتعبير الجيني للجينين aflDو aflR وانتاج الافلاتوكسين B1 == Biotic and Abiotic Control on Aspergillus flavus Growth, aflD and aflR Expression and Aflatoxin B1 Production

Author name: لبيد عبد الله نجم السعد
Supervisor name: عدنان عيسى البدران | سامي عبد الرضا الجميلي
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: Fifteen isolates of Aspergillus flavus (AFL1 - AFL15) were isolated from multiple sources included soil, compost, seeds, fruits, feed and air. The isolates were identified morphologically then confirmed by molecular techniques. Only thirteen isolates were confirmed positively (AFL1 - AFL5 and AFL8 - AFL15) while two of them were not. A phylogenetic analysis was made which revealed that the isolates grouped according to their source of isolation. The aflR profile and phenotypic AFB1 production confirmed that all thirteen isolates posses the ability to produce AFB1 with significant differences (P ≤ 0.05) among them. Growth rate profile was performed under 30ºC which showed significant differences (P ≤ 0.05) among isolates. According to the above tests, A.flavus AFL14 was selected to be the experimental isolate for the rest of experiments in this study. Comparing to A.flavus NRRL3357 type strain, the impact of temperature, water activity aw and isolate factors was examined to determine the limits and optimum ecological conditions of growth of A.flavus AFL14. The results displayed that the best growth rate was (7.217 mm/day) at 0.98 aw where the lowest was (4.069 mm/day) at 0.9 aw with no growth at 0.85 aw while the impact of temperature demonstrated by outweigh of growth rate at 35ºC (6.201 mm/day) followed by 30ºC (5.272 mm/day) which exceeded 25ºC and 40ºC (4.604 and 4.051 mm/day), respectively.Bacillus subtilis (isolates : BSS1, BSS2, BSS3, BSS4 and BSW) and Pseudomonas fluorescens (isolates : PFMst and PFDL) were elected to be used as biocontrol agents. All the isolates were passed the biochemical identification tests moreover, BSS4 and BSW isolates of B.subtilis and PFMst and PFDL isolates of P.fluorescens were confirmed molecularly which used later in all biocontrol experiments in this study. The ability ofbiocontrol agents to inhibit fungal growth was investigated and the resultsshowed significant inhibition impact represented by significant outweighof B. subtilis BSS4 (99%) on the rest of B. subtilis isolates followed by P.fluorescense PFDL and PFMst (92.29 and 86.19) %, respectively, with nosignificant differences (P ≤ 0.05) among them. The extra - cellular abilityof biocontrol agents to degrade AFB1 showed a high degradation abilityIpreformed by B. subtilis BSS4, BSW isolates and P. fluorescence PFMst,PFDL isolates (100, 100, 97.805 and 97.396%), respectively. Thedegradation residues administrated to rats to determine their effect onbiosystems, the blood parameters showed a significant reduction ofWBC, HB, RBC, and P.C.V while there was a significant increase inUrea, Glutamic pyruvate transaminase (GPT) Glutamic oxaloacetictransaminase (GOT) and MCV in AF+DMSO treatment comparing tothe negative and positive control. Water activity and biocontrol factorswere examined to control aflD and aflR expression and phenotypic AFB1production. When the experiment held using Nutrient Agar medium, asignificant inhibition of aflD and aflR expression (P=0.000 and 0.003),respectively performed by BSW at 0.94 aw comparing to 0.98 aw whileno significant inhibition was observed in the rest of the treatments. Allbiocontrol agents revealed high significant reduction of aflD and aflRexpression (P≤0.001) in each water activity level separately whichconfirmed by HPLC results. The phenotypic results showed that 0.94 awexceeded 0.98 aw in AFB1 reduction (2011 and 4280 ng/gm),respectively which agreed with gene expression results. When MaizeMeal Agar used as a medium, aflD expression presented a highsignificant increase at 0.98 aw relating to the NM level of each individualtreatment (P= 0.000 - 0.03) except PFDL+AFL14 which showed nosignificant aflD expression between both levels. aflR expression revealeda high significant reduction (P= 0. 000) caused by 0.98 PFDL+AFL14and 0.98 BSW+AFL14, respectively, while no significant differenceswere observed in the rest of the treatments or control. The HPLC resultsdisplayed a high significant reduction of AFB1 at 0.98 aw (8447 ng/gm)compared to (219000 ng/gm) at NM aw. The biocontrol agents caused ahigh significant reduction for both aflD and aflR expression (P=0. 000 - 0.043) under each individual water activity level while, HPLC resultsshowed non significant low reduction to the AFB1 performed by BSS4and BSW (25160 and 44790 ng/gm), respectively, followed by asignificant increase in AFB1 amount caused by PFMst and PFDL(267600 and 184100 ng/gm), respectively

واقع التلوث بالمركبات الهيدروكابونية في المياة والرواسب وبعض الاحياء المائية في مهر الكحلاء محافظة ميسان / العراق == The Status of Hydrocarbon Compounds Pollution of Water, Sediments and Some Aquatic Biota in Al - Kahlaa River - Missan Province /Iraq

Author name: صالح حسن جازع
Supervisor name: عبد الحسن يوسف العضب | حامج طالب السعد
General topic: Biology
Degree: Doctorate
Language: English
University location: Basrah
First pages:
Abstract: The present study was performed to have knowledge of hydrocarbon compounds pollution status in the water (dissolved and particulate fractions),sediments ,two species of aquatic plants (Ceratophyllum demersum and Paspalum pespaioides) ,two species of fishes(Liza abu and Carassius auratus) and one species of molluscs (Pseudodantopsis euphraticus) .The samples were collected monthly for the period November 2012 to October 2013 from four different stations ) Al - Magideh, Treatment unit, Al - Husaichi and Al - Zubair) distributed along Al - Kahlaa River in Missan province , in addition to Reference station lies on the Tigris River before entering Amara district about 25 Km .The sampling's months were divided into four typical seasons although this is incompatible with Iraq climate.As well as measures of some ecological parameters (water and air temperatures ,pH ,turbidity, electrical conductivity ,dissolved oxygen , biological oxygen demand BOD5 and total suspended solid) which ranged between 22 and 42 C˚ , 18 and 31 C˚ , 6.9 and 7.82 , 42 and 172 NTU , 12 and 118 μS/cm , 4.66 and 9.25 mg/l , 1.46 and 5.04mg/l ,33 and 108 mg/l respectively .In addition to that the Organic Matter(OM) and the texture were measured in the sediment samples. OM values ranged between 0.078 and 0.927% , whereas the percentage of the texture was ( 15 %clay, 71% silt and 14% sand),(31 %clay, 63% silt and 6% sand), (33 %clay, 57% silt and 10% sand) , (40 %clay, 47% silt and 13% sand) and (18 %clay, 55% silt and 27% sand) in Al - Magideh, Treatment unit , Al - Husaichi , Al - Zubair and Reference stations respectively .The concentrations of total petroleum hydrocarbons (TPHs)were measured by using spectrofluorometer. Concentrations of total petroleum hydrocarbons in dissolved fraction ranged between 1.36 μg/l in Reference station and 13.87 μg/l in Treatment unit station during summer and winter respectively ,and in particulate fraction between 2.69 μg/g dry weight in Reference station and 29.92 μg/g dry weight in Treatment unit station during summer and winter respectively ,while in sediments they ranged between 3.16μg/g dry weight in Reference station and 135.18 μg/g dry weight in Treatment unit station during summer and winter respectively. Concentrations of total petroleum hydrocarbons in C. demersum ranged between 5 μg/g dry weight during winter and 58.97 μg/g dry weight during summer , while in P. pespaioides between 3.18 μg/g dry weight during winter and 43.44 μg/g dry weight during summer. Concentrations of total petroleum hydrocarbons in L. abu ranged between 4.81 μg/g dry weight during spring and 37.3 μg/g dry weight during summer ,while in C. auratus between 2.51 μg/g dry weight during spring and 29.303 μg/g dry weight during autumn . Concentrations ofbtotal petroleum hydrocarbons in P. euphraticus ranged between 5.98 μg/g dry weight during spring and 119.75 μg/g dry weight during summer .The concentrations of Polycyclic Aromatic Hydrocarbons(PAHs) and n - alkanes were determined in the laboratories of Nihran Omer (South Oil Company in Basrah province ) ,using Gas Chromatography.Total concentrations of n - alkanes in dissolved fraction ranged between 0.027μg/l in Reference station and 0.192 μg/l in Al - Husiachi station during winter and between 0.016 μg/l in Reference station and 0.039 μg/l in Treatment unit during summer ,and for particulate fraction between 0.108 μg/g dry weight in Reference station and 2.096 μg/g dry weight in Treatment unit station during winter and between 0.101 μg/g dry weight in Reference station and 0.160 μg/g dry weight in Treatment unit station during summer ,while in sediments they ranged between 4.491 μg/g dry weight in Reference station and 51.32 μg/g dry weight Treatment unit station during winter and between 2.31 μg/g dry weight in Reference station and 19.31 μg/g dry weight in Treatment unit station during summer.The range of carbon chain length of n - alkanes in dissolved fraction ranged from C8 to C34 and in particulate fraction from C15 to C34 distributed in two patterns ,the first pattern included compounds between C8 and C25 with the abundance of C19,C21,C23 and C25 odd carbon number of and C18,C20,C22 and C24 for even carbon number ,while the second pattern included compounds with the range from C26 to C35 predominated by C27 and C29 odd carbon number and C26,C28 and C30 even carbon number.In sediments they ranged from C14 to C35 and distributed in two patterns, the first pattern included compounds between C8 and C25 with the abundance of C17,C19 and C21 odd carbon number and C18,C20 and C22 for even carbon number ,while the second pattern included compounds with the range from C24 to C35 with predominance of C31and C33 odd carbon number and from C24 to C34 even carbon number.Total concentrations of n - alkanes in C. demersum ranged between 6.467 μg/g dry weight during spring and 59.483 μg/g dry weight during summer ,whereas in P. pespaioides between 34.7 μg/g dry weight during winter and 166.6 μg/g dry weight during summer .The distribution of n - alkanes compounds in plants chain length ranged from C15 to C35 with bimodal from C15 to C27and from C28 to C35 with predominance of C17 to C25 odd carbon number and C18 to C24 even carbon number in the first one ,whereas in the second the dominance compounds were from C29 toC33 for odd carbon number and from C26 to C32 even carbon number.cTotal concentrations of n - alkanes in muscles of L. abu ranged between 14.60 μg/g dry weight during winter and 73.15 μg/g dry weight during summer and C. auratus between 34.76 μg/g dry weight during winter and 166.61 μg/g dry weight during summer . The distribution of n - alkanes compounds in fish muscles chain length ranged from C16 to C35 with bimodal from C16 to C25 and C26 to C35 with predominance of C17 to C25 and C18 to C24 for the first one ,and from C27 to C33 and from C26 to C34 for the second. These reflected nutrition nature for these kinds of fishes which depend on algae ,phytoplankton ,zooplankton ,diatoms ,insects and crustacean . While in the mollusc (P. euphraticus) ranged between 95.16μg/g dry weight during spring and 220.36 μg/g dry weight during summer. The distribution of n - alkanes compounds in P. euphraticus chain length ranged from C14 to C35 with bimodal from C14 to C27 and from C28 to C35 with predominance of C17 to C21 and from C18 to C24 for the first one ,and from C29 to C33 and from C30 to C34 for the second.The values of Carbon Preference Index (CPI) and pristane to phytane ratio was calculated to know the hydrocarbon compounds source in water ,sediments and biota of Al - Kahlaa River ,since the CPI value ranged between 0.142 and 1.314 in dissolved fraction and between 0.045 and 2.193 in particulate fraction , 0.160 and 1.872 in sediments,1.075 and 8.638 in plants , 0.285 and 1.537 in fishes and between 0.354 and 4.457 in mollusc .Whereas the values of pristane to phytane ranged between not detected and 1.579 in dissolved fraction , not detected and 0.601 in particulate fraction , 0.447 and 3.008 in sediments, not detected and 0.821 in plants , not detected and 2.176 in fishes and between 0.822 and 1.347 in mollusc .These indicate that there are two sources of hydrocarbon compound in water ,sediments and biota ,biogenic from living organisms and anthropogenic from domestic ,industrial and petroleum pollutants except in plants .Total concentrations of PAHs in dissolved fraction varied from 0.739 ng/l in Reference station to1.974 ng/l in Treatment unit during winter ,and from 0.300 ng/l in Reference station to1.125 ng/l in Treatment unit during summer ,and in the particulate fraction they varied from 0.79 ng/g dry weight in Reference station to 24.42 ng/g dry weight in Treatment unit during winter ,and from 4.369 ng/g dry weight in Reference station to10.545 ng/g dry weight in Al - Husaich during summer ,while in sediments they varied from 4.906 ng/g dry weight in Reference station to 35.479 ng/g dry weight in Treatment unit during winter ,and from 2.391 ng/g dry weight in Reference station to 25.886 ng/g dry weight in Treatment unit during summer.It had been noticed that there were a predominance of high molecular weight PAHs on low molecular weight PAHs ,while Benzo(a)dAnthracene/(Benzo(a)Anthracene+ Chrysene) BaA/(BaA+Chr) ratio ranged from 0.218 to 0.804 in water and 0.520 to 0.66 in sediments. The Indeno (1,2,3 - cd)pyrene /(Indeno (1,2,3 - cd)pyrene + Benzo(ghi)perylene) InP/(InP+BghiP) ratio ranged between not detected and 0.578 in water and between not detected and 0.681 in sediments .The Fluoranthene/ Pyrene (Fl/Py)ratio ranged between 0.150 and 2.47 in water and between 0.10 and 8.490 in sediments ,this give an indication of the source of PAHs compounds in water and sediments which were mainly pyrogenic and few from them petrogenic .Total concentrations of PAHs in C. demersum ranged between 24.124 ng/g dry weight during winter and 87.289 ng/g dry weight during summer ,whereas in P. pespaioides between 1.616 ng/g dry weight durig winter and 16.661 ng/g dry weight during summer .The Lower Polycyclic Aromatic Hydrocarbons to Higher Polycyclic Aromatic Hydrocarbons ratio ranged between 0.006 and 0.009 in C. demersum and between 0.008 and 0.103 in P. pespaioides. TheBaA/(BaA+Chr)ratio ranged from 0.995 to 0.997 in C. demersum and 0.756 to 0.995 in P. pespaioides. The InP/(InP+BghiP) ratio ranged between 0.342 and 0.807 in C. demersum and between 0.19 and 0.645 in P. paspaloides . The Fl/Py ratio ranged between 0.096 and 0.988 in C. demersum and between 0.018 and 5.018 in P. pespaioides. These indicate that the sources of PAHs in these plants were both pyrogenic and petrogenic .Total concentrations of PAHs in muscles of L. abu ranged between 2.301 and 16.661 ng/g dry weight during winter and summer respectively and in C. auratus between 1.095 and 8.675 ng/g dry weight during winter and summer respectively ,whereas in mollusc (P. euphraticus) ranged between 1.86 and 6.88 ng/g dry weight during spring and summer respectively. According to ratios of Low Polycyclic Aromatic Hydrocarbons(LPAHs) to High Polycyclic Aromatic Hydrocarbons (HPAHs), BaA/(BaA+Chr), InP/(InP+BghiP) and Fl/Py ,they certainly reflected that the PAHs sources in fishes and mollusk are pyrogenic as a main sources and petrogenic as a small part .Also results of this study revealed the presence of seasonal and spatial variations in concentrations of TPHs ,n - alkanes and PAHs in water ,sediments and aquatic biota from Al - Kahlaa River ,the highest concentrations were recorded during winter whereas the lowest during summer ,also the highest values of these compounds were recorded in Treatment unit station in comparison with other stations.

تجميع وتشخيص واستخدام الهائمات الحيوانية الدقيقة من نهر الحلة في تغذية يرقات اسماك الكارب الشائع (L., 1758) Cyprinus carpio

Author name: ازهار عبد الحميد عبد الحسن
Supervisor name: مؤيد جاسم ياس العماري | عدي جاسم عبد الرزاق
General topic: Biology
Specific topic: Environment
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: The present study was carried out in AL - Hilla River near Al mahaweel district in the middle of Iraq during autumn 2016 to summer 2017. The study included a collection of high density from microzooplankton by use special device then identified and used it as live food for early feeding common carp larva (Cyprinus carpio). The environmental factors of Hilla river tested for four seasons and ranged between 6 - 44 ˚C of air temperature, 9.5 - 30 ˚C of water temperature, 7.03 - 8.58 of pH, 921 - 1090 µm/cm of conductivity, 654.33 - 772.00 mg/l of total dissolved solids and 550.00 - 636.33 of salinity, 5.43 - 13.03 mg/l of total suspended solids, 7.5 - 10.31 mg/L of dissolved oxygen, 1.96 - 6.30 mg/l of BOD5, 1.61 - 2.49 m/s of water velocity, 5.17 - 16.80 µg/L of chloropyll - a - . The taxonomic and ecological study is done to the microzooplankton specially rotifer. There are few studies of rotifer in Hilla river, The result showed that the density of rotifera was ranged between 23ind. /L in the summer season to 65.66 ind. /L in winter season, included 65 rotifer taxa (62 species +2genera +1 class) were recorded in this study, 10 taxa (9 species + 1 genus) were recorded for the first time in Iraq and 14 taxa (13 species + 1 genus) were recorded for first time in Hilla River compared with available local studies. Keratella tropica showed the highest density of the rotifera, Lecane genus showed the highest species number (10 species). Canonical correspondence analysis showed Physico - chemical parameters of water affected on the density of rotifer both positively and negatively. There was positive significant correlation between density rotifer with electrical conductivity, total dissolved solids, and salinity, while pH showed the lowest effect on the density of rotifer than other environmental factors. Different species of rotifer showed some variations of the correlation with environmental factor, such as the density of Bdelloidea class correlated positive significant correlation with water temperature, while Keratella cochlearis species negative significant correlation with water temperature. Special system (multi - filtration system) designed and made by researchers in our study for collection high density of microzooplankton with size sample range between 50 - less 200 µm, with short time, less effort and low cost. The multi - filtration system that consists of three stages : pumping stage, multi - filtration stage and sample collection stage. The density of the samples was measured seasonally by comparing the density of the microzooplankton in Hilla river and the density of the microzooplankton sample obtained by the multi - filtration system. The highest density of multi - filtration system rotifer was 1023033 ind./L and the highest density of multi - filtration system total microzooplankton was 1052000 ind/L and measured chlorophyll - a - of sample multi - filtration system that ranged between 23.54 - 1931.09 µg/L. The density of rotifer and total microzooplankton that collect by the multi - filtration system were concentration up to 20222.22, 17558.81 times than what is in the river. After collection of the high density of microzooplankton by using the multi - filtration system, this microzooplankton was used as live food for early feeding fish larvae. A special experiment was designed to feed common carp of fish larvae (Cyprinus carpio) using three types of food : first live diet collected by the multi - filtration system that microplankton most rotifer, second soybean meal and third mixed food (rotifer and soybean meal). Some growth indicators for fish larvae were studied; the results showed that the highest growth rate and best survival rate were larvae fed on live food, highest increased weight and increased length, relative growth rate, specific growth rate and lowest survival rate (33.53 mg, 3.33mm, 87.78, 30.11, and32.38 % respectively) for larvae fish feeding on rotifera, while lowest increased weight and increased length, relative growth rate, specific growth rate and lowest survival rate (27.00mg, 1.43mm, 85.23, 27.39, and 61.90 % respectively) for fish larvae feeding on soybean meal.

دراسة جزيئية للجينات البيتا - لاكتاميز في بكتريا Acinetobacter baumannii المقاومة للمضادات الكاربابينيم == Molecular Study of ? - lactamase Genes in Carbapenem Resistant Acienetobacter baumannii (CRAB)

Author name: ربيع عبد الاله مجيد عبد علي الهنداوي
Supervisor name: ايمان محمد جار الله
General topic: Biology
Specific topic: Life Science
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: During the period between April 2016 and January 2017, a total of 1100 clinical specimens (burns, wounds, throat, urine, blood) were collected from two hospitals in Babylon province Al - Hillah Teaching Hospital and Medical City of Mirjan Hospital. All specimens were cultured and 17 Acinetobacter baumannii isolates were obtained from clinical specimens in a percentage of (1.5%) distributed in burn 11 (2.8%), wound 1 (0.6%), throat 1 (2%), urine 3 (0.7%) and blood 1 (0.9%).This study was conducted to determine the presence of carbapenem resistance Acinetobacter baumannii (CRAB) isolates and the prevalence of β - lactamase genes responsible for carbapenem - resistance among clinical isolates of A. baumannii collected from two hospitals in Hillah City. Isolates were identified according to VITEK2 system. Antibiotics susceptibility was assayed by using disks diffusion method according to CLSI recommendations and it’s found 8 isolates was carbapenem resistant.The eight CRAB isolates were tested for biofilm formation by using the tube adherence test and the results showed that 5 of 8 tested isolates (62.5%) were strong for biofilm formation. Two genes related to biofilm formation was investigated (bap & blaPER - 1 genes). Six isolates were positive for the bap gene (75 %) and no isolates had positive for blaPER - 1 gene. The eight CRAB isolates were tested also for the presence of two virulence factor genes include espA (K1 capsular polysaccharide) and ompA (outer membrane protein A), this detection was performed by the conventional PCR technique. The positive result for espA and ompA genes was (62.5%) and (75%) respectively.IIPhenotypic detection of carbapenemase production was performed using the imipenem - EDTA disk and modified Hodge's test (MHT). Then isolates were subjected to monoplex PCR targeting blaCTX, blaTEM, BlaSHV, blaIMP, blaVIM, blaSPM, NDM - 1, NDM - 2, AmpC, OXA - 23, OXA - 24, OXA - 48, OXA - 51, OXA - 58 and OXA - 235 genes, all CRAB isolate gave positive result with MHT and (50%) of these isolates were positive to the imipenem - EDTA disk. PCR experiments showed ; all CRAB isolates were harbored blaOXA - 51 gene, six (75%) isolates were harbored blaCTX gene, four (100%) isolates were harbored blaTEM gene, four (50%) isolates were harbored blaVIM gene, four (50%) isolates were harbored blaSPM gene, seven (87.5%) isolates were harbored NDM - 2 gene, seven (87.5%) isolates were harbored ampC gene, six (75%) isolates were harbored OXA - 23 gene, one (12.5%) isolates were harbored OXA - 24 gene, two (25%) isolates were harbored OXA - 48 gene and one (12.5%) isolates were harbored OXA - 235 gene, while none of these isolates harbored BlaSHV, blaIMP, NDM - 1, NDM - 2 genes. All isolates of A. baumannii appear as MDR, while two isolates appear to be as XDR.These results revealed that CRAB isolates constitute 47% of all A. baumannii that had been isolated from Al - Hillah Teaching Hospital and Medical City of Mirjan Hospital in Babylon province and some of carbapenemase were detected in both phenotypic and genotypic methods (PCR). This underlies the importance of their accurate identifications and reporting to prevent the emergence of complete resistance to the most potent drugs against A. baumannii in Babylon province.

انتاج وتوصيف لنقي المنتجات الايضية لعزلة Streptomyces ودراسة تاثيراتها المضاد حيوية والسرطانية == Production and Characterization of Purified Metabolites from Streptomyces Isolate and Study

Author name: ليندا حميد تركي عطية الغزالي
Supervisor name: رباب عمران راضي الجيلاوي
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: شملت الدراسة الحالية جمع 100 عينة من الترب بواقع 50 عينة من ترب صحراوية جمعت من المناطق التي تبعد مسافة 3 كيلومترات من بحيرة الرزازة و50 عينة من ترب زراعية جمعت من مناطق مختلفة من محافظه كربلاء المقدسة. حيث عزلت 26 عزلة من البكتريا الخيطية من الترب الصحراوية و36 عزلة من البكتريا الخيطية من الترب الزراعية ودرست الفعالية التضادية لهذه العزلات ضد اربعة انواع من البكتريا المرضية ( بكتريا الموجبة لصبغة كرام Staphylococcus aureus and Streptococcus agalactiae وبكتريا السالبة لصبغة كرام (Escherichia coli and Pseudomonas aeru¬ginosa وبطريقة التخطيط العمودي, واظهرت النتائج ان جميع actinomycetes المعزولة من الترب الزراعية ليست لها اي فعالية مضادة للبكتريا المرضية بينما كانت لبكتريا actinomycetes المعزولة من الترب الصحراوية فعالية مضادة للبكترياالمرضية وبمديات مختلفة تبعا لنوع البكتريا المرضية المدروسة, وقد وجد ان لثمانية من عزلات actinomycetes الصحراوية فعالية مضادة للبكتريا المرضية السالبة والموجبة لصبغة كرام وتبعا لذلك المدى الواسع في التثبيط اختبرت فعاليتها المضادة بطريقة الانتشار بالحفر, واظهرت النتائج ان العزله LHR 9 actinomycetesلها فعالية مضادة للبكتريا المرضية اعلى من العزلات الاخرى المختبرة وباستخدام طريقة الانتشار بالحفر, لذلك اختيرت لاكمال محاور الدراسة المتقدمة. درست الصفات المظهرية والبايوكيمياوية والزرعية للبكتريا actinomycetes LHR 9 بعد زرعها على اوساط زرعية مختلفة من وسط استخلاص Streptomyces الدولي واعتمادا على الفحص المجهري باستخدام المجهر الضوئي المركب وتحت قوى تكبير 1000و400مره لدراسة شكل المايسليوم الهوائي والارضي, وقد تبين ان للعزلة مايسليوم هوائي متفرع له مظهر مفصص وغير مجزا وباستخدام المجهر الاليكتروني الماسح تبين ان المايسليوم يحمل ابواغا ملساء وغير متحركة, وبالاعتماد على مجمل الصفات الزرعية والفسيولوجية المدروسة تبين ان البكترياLHR 9 actinomycetes المعزولة تعود لجنس Streptomyces. درست عدد من الظروف الزرعية والغذائية المثلى لتحسين انتاج مواد الايض الثانوي من البكتريا في وسط التخمر وقد كان وسط فول الصويا الحاوي على الدكستروز كمصدر كاربوني والبيبتون كمصدر نتروجيني وK2HPO4 كمصدر فوسفاتي وبظروف تخمر : بدرجه حراره 35م0 , وحموضه 7 , وقوه اهتزاز 200دوره \ دقيقه ولمده 7 ايام كفتره حضن هو وسط الانتاج الامثل . استخدمت مذيبات عضوية مختلفة القطبيةn) - بروبانول وكلوروفورم وخلات الاثيل ووالاسيتون والميثانول والايثانول (في استخلاص مواد الايض الثانوي المنتجة من بكتريا Streptomyces sp. LHR 9 المضادة للبكترياالمرضية وقد كان المذيب العضوي خلات الاثيل افضل المذيبات العضوية في الاستخلاص اذ اعطى مستخلصه البكتيري اعلى قيم في التثبيط البكتيري . نقيت مواد الايض الثانوي بعد استخلاصها بخلات الاثيل بعمود الفصل : جيل السيليكا ذو الابعاد (1.6× 14) سم وباستخدام الميثانول والكلوروفورم بنسبه 8 : 2 حجم\حجم كمحلول الغسل لسم3 واحد من المستخلص البكتيري , وقد جمع 50 جزء من المحلول الناتج بعد الغسل واختبرت فعاليتهاالتثبيطية لنمو البكتريا المرضية , وقد اعتمدت الاجزاء الفعالة لقياس التركيز المثبط الادنى باستخدام طريقة الانتشار من القرص, وقد كانت التراكيز (4.5 , 5 , 2.5 ,3)مايكروغرام/مل هي التراكيز المثبطه الدنيا لبكتريا Escherichia coli , Pseudomonas aeruginosa, Staphylococcus aurues , Streptococcus agalactiae على التوالي. قيمت السمية الخلوية لمواد الايض الثانوي والمنقاة جزئيا لتحديد مدى فعاليتها المضاده للسرطان وبالاعتماد على فحص MTT (3 - (4, 5 - dimethylthiazol - 2 - yl) - 2 - 5 - diphenyl tetrazolium bromide) وباستخدام خطوط خلايا الثدي السرطانية وخطوط خلايا سليمة, وقد اظهرت النتائج بان التركيز 400مايكوغرام\ مل هو التركيز الامثل لتثبيط نمو الخلايا السرطانية بنسبه 60% مع المحافظة على 80% من الخلايا السليمة. اعتمدت الكروماتوغرافيا السائلة Liquid Chromatography - Mass Spectroscopy (LC - MS) في تنقية المركب الفعال وتوصيفة اذ اظهرت نتائج المخطط اللوني ان هنالك خمسة قمم وبالمقارنة مع الاطياف الكتلية للمركبات حسب المعهد الامريكي للمعايير والتقنية National Institute of Standards and Technology ان للمركب صيغة كيمياوية C18H32O2 ووزن جزيئي 282دلتن . درست الفعالية المضادة للاكسدة والمضادة للاورام لمستخلص Streptomyces sp. LHR 9 (المنقى جزئيا) في اناث الجرذان المختبرية المحفزة للاصابة بسرطان الثدي كيمياويا باستخدام مادة 7,12 dimethyl Benz (A) anthracene (DMBA) واظهرت النتائج ان لمستخلص LHR 9 Streptomyces sp. (المنقى جزئيا) القدره على المحافظة على تركيز الانزيمات المضادة للاكسدة في مصل الحيوانات المعاملة بمادة DMBA وبقيم مقاربة لما هي موجودة في مصل الحيوانات السليمة وقد تمثلت اثار ذلك بصغر وزن وحجم الورم فيى منطقة الثدي والتغيرات النسيجية الملحوظة, وعلى مستوى جزيئ ايضا اذ لوحظ وباستخدام تقنية Polymerase Chain Reaction - Single Strand Conformation Polymorphism(PCR - SSCP) التغيرات الوراثية الحاصلة للجينين ( Bcl - 2 وCaspase - 3) بفعل مادة DMBA ودور مستخلص Streptomyces sp. LHR 9 (المنقى جزئيا) في الحفاظ على الشكل الطبيعي للجينين اذ تبين ان هناك83.66% من الحيوانات السليمة و50% من الحيوانات المعاملة بالمستخلص البكتيري تمتلك جين Caspase - 3 بشكله الطبيعي بينما 66.66% من الحيوانات التي عوملت بماده DMBA فقط تمتلك جين Caspase - 3 من النوع الطافر وكذلك بالنسبة للجين Bcl - 2 اذ تبين ان هناك 78.66% من الحيوانات السليمة و60% من الحيوانات المعالجة بالمستخلص البكتيري تمتلك جين Bcl - 2من النوع الطبيعي بينما لوحظ وجود نفس الجين ولكن من النوع الطافر بنسبة 66.67% في الحيوانات المصابة بسرطان الثدي بتاثير مادة DMBA. | The present study included the collection of 100 soil samples from desert regions away from about 3 km from Al - Razzaza lake and agricultural regions at Karbala Province, Iraq. From these samples 26 and 36 actinomycetes isolates were obtained from desert and agricultural regions respectively . All actinomycetes isolates were tested for their antibacterial activity using primary screening against pathogenic bacteria by perpendicular streaking method .The results were showed that all the actinomycetes isolates were isolated from agricultural regions hadn't any antibacterial activity while the 26 isolates isolated from desert regions were had antibacterial activity in different spectra . Eight actinomycetes isolates from all the 26 desert regions isolates were selected for secondary screening due to their antibacterial activities with wide spectrum against pathogenic bacteria namely Gram positive (Staphylococ¬cus aureus and Streptococcus agalactiae) and Gram negative (Escherichia coli and Pseudomonas aeru¬ginosa) by the agar diffusion methods and the results revealed the selection of actinomycetes LHR 9 isolate for farther studies because it gave us the highest inhibition against the tested pathogenic bacteria growth. The active actinomycetes LHR 9 isolate was identified using several morphological and biochemical methods. The morphological characterization was involved the study of aerial and substrate mycelium on many International Streptomyces Project agar medium and using light microscopy at 1000X and 400X to study the mycelium morphology, as well as using the scanning electron microscope (SEM) to examine the spore surface. The results exhibited that the isolate had the aerial mycelium which formed unfragmented, branched, looped and rectus - flexibilis hyphae type bearing non - motile spores with smooth surface. In addition to results of biochemical tests we could revealed that the isolate was belong to Streptomyces genus . The active isolate Streptomyces sp. LHR 9 was selected for optimization critical cultural and nutritional parameters for increasing the antibiotic production titer in fermentation medium (Soybean broth medium), the results showed the dextrose as carbon source , peptone as nitrogenous source and K2HPO4 as a phosphate source with fermentation cultural condition included ; temperature of 35 °C, pH 7 with agitation rate 200 rpm for 7 days as incubation period gave high values in active secondary metabolites production. The antibacterial compound from fermentation medium was extracted using liquid - liquid extraction method with various organic solvents n - propanol, chloroform, ethyl acetate, acetone, methanol and ethanol) 1 : 1 (v/v) . the results was revealed the ethyl acetate the most efficient in extraction . The Streptomyces sp. LHR 9 crude extract was purified by using silica gel column (1.6 X 14) chromatography. Chloroform and methanol (4 : 1) (v/v), was used as an eluting solvent. The active fractions ( had the antibacterial activity ) were selected for determination the minimum inhibitory concentration and evaluation the cytotoxic activity using MTT (3 - (4, 5 - dimethylthiazol - 2 - yl) - 2 - 5 - diphenyl tetrazolium bromide) assay. The results of the MIC of partially purified Streptomyces sp. LHR 9 extract were 4.5 µg/ml for Escherichia coli, 5 µg/ml for Pseudomonas aeruginosa, 2.5µg/ml for Staphylococcus aurues and 3µg/ml for Streptococcus agalactiae . In vitro screening for cytotoxic activity was done by MTT assay for evaluation the anticancer activity of the partially purified antibacterial compounds produced by Streptomyces sp. LHR 9. The cytotoxic activity of the partially purified Streptomyces sp. LHR 9 extract was determined against established MCF - 7 cell line ( breast cancer cell lines ) and WRL cell as a representative of normal breast cell line, depending on their viability ratio. The viability of MCF - 7 cell line was decreased dramatically with the increasing in extract concentration in the same time the viability of WRL cell was decreased in slowly manner. The using of multiple purification methods Liquid Chromatography - Mass Spectroscopy (LC - MS) along with a sensitive measuring method and possibly isolation of these compounds should allow us to evaluate the entire potential of secondary metabolites production, the results from LC - MS chromatogram of the partially purified Streptomyces sp. LHR 9 extract showed five peaks, on comparison of the mass spectra of the constituents with the National Institute of Standards and Technology( NIST) library the compound was had the Formula : C18H34O2 and molecular weight : 282 D. The partially purified Streptomyces sp. LHR 9 extract was evaluated for its in vivo antioxidant and antitumor activity depending on the ability of 7,12 dimethyl Benz (A)anthracene (DMBA) to inducing breast tumor in female rat model, the results revealed the partially purified Streptomyces sp. LHR 9 extract had the ability to keeping the enzymatic antioxidant in approximately its natural concentrations (as the same concentrations in serum of negative group) in serum of tested rats which were induced breast cancer by DMBA and treated with partially purified Streptomyces sp. LHR 9 extract, so these results were more studied on histological plane and the results of that were achieved by decreasing in weight and size of the breast tumor of tested rats and other histological change in breast tissue. In addition to that partially purified Streptomyces sp. LHR 9 extract effect was more studied on molecular plane depending on the Bcl - 2 and Caspase - 3 genes mutation using Polymerase Chain Reaction - Single Strand Conformation Polymorphism ( PCR - SSCP) analysis. The results were two conformations polymorphism in both Caspase - 3 gene ( about 83.66 % of negative group and 50% of treated group had three bands (wild type) where's positive control had 66.66% four bands (mutant type)) and Bcl2 gene (the wild type had one band such as negative group was 78.66% and test group 60%, compared with positive group (60.67%) have two bands(mutant type)). so these results suggest the active apoptotic property of Caspase - 3 and Bcl - 2 and the role of partially purified Streptomyces sp. LHR 9 extract effect in keeping them in their wild type.

تاثير مستخلص نبات الكجرات Hibiscus sabdariffa على عوامل الضراوة لبكتيريا المكورات العنقودية الذهبية المعزولة من التهابات المجاري البولية == Effect of Hibiscus sabdariffa Extract on the Virulence Factors of Staphylococcuss aureus Isolated from Urinary Tract Infection

Author name: صمود عبد الكاظم سلمان عبد
Supervisor name: وجدان رضا تاج الدين
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تم جمع 163 عينة ادرار من المرضى المصابين بالتهاب المجاري البولية لكلا الجنسين باعمار تتراوح من شهر واحد الى 60سنة من المراجعين في مستشفى القاسم ومستشفى الهاشمية العام خلال الفترة من اب 2016 الى كانون الاول 2016. وقد وجدت 112 (68.71%) عينة اعطت نموا بكتيريا ومن هذه النسبة وجدت36 (32.14%) عزلة موجبة لصبغة غرام و76(67.86%) سالبة لصبغة غرام . وقد تم تشخيص 23(20.5%) عزلة بكتيرية تعود للبكتريا العنقودية الذهبية Staphyllococcus aureus، تم تشخيص جميع هذه العزلات مظهريا ومجهريا وحيويا.تم اختبار حساسية المضادات الحيوية لجميع هذه العزلات. وكانت جميعها مقاومة 100% للامبسلين، يليها سيفوكسيتين 91.3 %. واظهرت هذه العزلات اعلى حساسية للمضاد الحيوي الكليندامايسين 78.2% , في حين كانت نسبة المقاومة للاميكاسين هي39.1% . وقد وجد ان نسبة المقاومة للتراسايكلين هي 47.8% . وقد اظهرت النتائج ان 20 (86.9%)عزلة مقاومة للمضاد الحيوي المثسيلين (MRSA) وقد تم الحصول على هذه النتيجة باستخدام تقنية تفاعل انزيم البلمرة التسلسلي (PCR).درست فعالية المستخلص المائي الحار والبارد لاربعة نباتات (كاس الكجرات جذور العاقول وقشور الرمان واوراق الخباز) ضد البكتريا العنقودية الذهبية ووجد من خلال التحليل الاحصائي وجود فروق معنويه 0.05 P< في حالة المستخلص المائي البارد للكجرات حيث اعطى فعالية تثبيطية تجاه هذه البكتريا لذا تم اختيار هذا المستخلص لدراسة تاثيره على عوامل الضراوة لهذه البكتريا. بعدها تم التحري عن المركبات الموجودة في هذا المستخلص وقد اظهرت النتائج ان المستخلص المائي يحتوي كلا من الفينولات , القلويدات , الفلافونات والتانينات.درست فعالية المستخلص المائي البارد الخام لكاس الكجرات المضادة للبكتريا بطريقه الانتشار بالحفر (agar well diffusion method) باستخدام التراكيز 2,5 و5و10و20و40و80 ملغم / مل. بعدها تم تحديد MIC لهذا المستخلص بطريقه الانتشار بالحفر( The modified broth macro dilution method) فكانت قيمته 25ملغم/مل.وقد اظهر المستخلص المائي البارد فعالية تثبيطية تجاه البكتريا العنقودية الذهبية بقطر 18 ملم بتركيز 40و80 ملغم /مل .تم استخلاص المركبات الفينولية من المستخلص المائي البارد للكجرات بعدها تم استخدام تقنيه الفصل الكروموتوكرافي عالي الجودة لعزل وتشخيص المركبات الفينوليه وقد تم الحصول على عدة مركبات. بعدها تم دراسة الفعالية التثبيطية لهذه المركبات ووجد بان المركب الفينولي الكويرسيتين قد اعطى اعلى فعالية تثبيطية تجاه البكتريا العنقودية الذهبية بتركيز 4 ملغم /مل وايضا تم تحديد MIC لهذا المركب وهي 2ملغم /مل .كما درس تاثير المستخلص الخام والكويرسيتين على عوامل الضراوة وقد اظهرت النتائج ان كلا منهم قد كان له تاثير على انتاج الهيمولايسين وعلى فعاليته وذلك بعد تنمية البكتيريا مع قيمة MIC للمستخلص الخام والكويرسيتين كلا على انفراد.كذلك تم دراسة تاثير هذه المستخلصات على تكوين البايوفيلم من قبل البكتريا وقد وجد ان 15 عزلة بكتيرية منتجة للبايوفيلم قد تحولت الى غير منتجة او الى منتجة ولكن من النوع الرقيق بعد تنميتها مع هذين المستخلصين.وقد اظهرت النتائج ايضا ان المستخلص الخام والكورسيتين للكجرات قد اثرا على فعالية كلا من الستافيلوكاينيز والبروتيز.تم التحري عن انتاج السموم المعوية من قبل البكتريا العنقودية الذهبية باستخدام تقنية الفار الرضيع وقد وجد بان جميع العزلات غير منتجة لهذه السموم.كذلك تم دراسة تاثير هذين المستخلصين على تسرب ايون البوتاسيوم من الخلايا البكتيرية خلال فترات زمنية معينة وقد وجد بان هذين المستخلصين قد عملا على زيادة تسرب هذا الايون من الخلايا البكتيرية مما يدل على ان هذين المستخلصين قد اثرا على نفاذية الغشاء الخلوي للخلية البكتيرية .كذلك وجد ان الجرعة القاتلة لنصف حيوانات التجربة قد زادت من 5,6 × 106 الى 3,9× 107 بعد معاملة البكتريا بالمستخلص المائي البارد لكاس الكجرات . ايضا تم دراسة تاثير المستخلصين الخام والكورسيتين على معايير الدم في الفاران المعاملة بالعالق البكتيري الذي يحتوي مستخلص نباتي والفاران المعاملة بالعالق البكتيري الذي يحتوي على الكورسيتين وقد وجد بان المستخلص الخام كان له تاثير اكبر من الكورسيتين في تحسين معايير الدم مقارنة بالبكتريا المعاملة بالعالق البكتيري بدون مستخلص نباتي ,كما تم دراسة امكانية استخدام النبات كعامل مختزل عن طريق معرفة الفعالية ضد التاكسدية وكانت قيمتها 3566,97 مايكرو مولاري بواسطة استخدام اختبار (CUPRAC). ايضا تم دراسة الفعاليه الخلويه السمية للمستخلص الخام على خلايا الكبد الطبيعية للانسان وعلى الخلايا السرطانية في الثدي وقد وجد بان هذا المستخلص ليس له فعالية سمية على خلايا الكبد الطبيعية وايضا له تاثير قاتل للخلايا السرطانية في الثدي .

دراسة مناعية ووراثية للمرضى المصابين بالتهاب المرارة في مدينة الحلة == Immunogenetic Study on Patients with Gallbladder Infection in Hilla city

Author name: رواء عداي علي السلطاني
Supervisor name: عبد النبي جويد عبد المعموري
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تضمنت الدراسة جمع ( 100 عينة ) اخذت بشكل اعشواني ( 87 اناث , 13 ذكور ) اجريت لهم عملية استئصال المرارة بمستشفى الحلة التعليمي للفترة من ايلول 2016 الى شهر حزيران 2017. تضمنت العينات (عينات دم وحصى) لتحقق من دور بعض المعايير المناعية والوراثية المتعلقة بمرض التهاب المرارة .بينت نتائج الدراسة الحالية ظهور الاصابة بالتهاب المرارة في كلا الجنسين(الاناث والذكور) وكانت الفئة العمرية ( 31 - 40 ) سنة الفئة الاكثر عرضة للاصابة , لكن نسبة اصابة الاناث في مجتمع الدراسة اعلى من الذكور ( 87% ) بينما الذكور ( 13%) كما ان التهاب المرارة المزمن هو الاكثر شيوعا ,اذ شكل نسبة ( 84% ) ثم التهاب المرارة الحاد اذ شكل نسبة 60%)).كما كشفت الدراسة قلة تكوين الحصى المرارية عند الاطفال بعمر اقل من عشر سنوات ويزداد تكوين الحصى مع تقدم العمر وينخفض تدريجيا بعد عمر 60 سنة . اكثر انواع الحصى المرارية الشائعة والتي عزلت الحصى الكوليسترولية تليها الحصى الصبغية ثم الحصى المختلطة.اما الدراسة المناعية فتضمنت تقدير مستويات T6F - β1 , IL - 8 في مصل مرضى التهاب المرارة باستخدام تقنية الاليزا لوحظ زيادة مستوى TBF - β1 في جميع المرضى( التهاب المرارة الحاد والمزمن) على نقيض مجموعة السيطرة مع مستوى احتمالية. P< 0.05 P=0.007 . كما اظهرت النتائج الحالية زيادة بمستوى T6F - β1 في كلا الجنسين) للاناث والذكور) مقارنة مع مجموعة السيطرة بمستوى احتمالية P=0.002 . P< 0.05 للاناث وP=0.003 . P< 0.05 للذكور. اما بالنسبة للحصى المرارية فقد لوحظ زيادة في مستوى T6F - β1 في مصل المرضى المصابين بالحصى الكوليسترولية تليها الحصى الصبغية ثم الحصى المختلطة .اظهرت النتائج الخاصة بتقدير مستوى انترلوكين 8 ,زيادة في مستوى IL - 8 في جميع المرضى( التهاب المرارة الحاد والمزمن )على نقيض مع مجموعة السيطرة مع مستوى احتمالية عالي ( P=0.005 . P<0.05 ) .كما ظهرت النتائج الحالية زيادة في مستوى انترلوكين 8 في كلا الجنسين(الاناث والذكور) مقارنة مع مجموعة السيطرة مع مستوى احتمالية ( P=0.01 . P< 0.05 ) للاناث و<0.05) ( P=0.2 . P للذكور. اما بالنسبة للحصى المرارية فقط لوحظ زيادة في مستوى IL - 8في جميع المرضى المصابين بالحصى المختلطة تليها الحصى الكوليسترولية ثم الحصى الصبغية .تضمنت الدراسة الوراثية ( - 869 T C ) T6F - β1 و( - 251 T A ) L - 8 ذات الصلة مع مرضى التهاب المرارة لل85 عينة متضمنة عينات للمرضى وعينات لمجموعة السيطرة باستخدام تقنية (PCR - ARM ) .اظهرت نتائج التنوع النيوكليوتيري المفرد 76.6%) 46 : T6F - β1 ( - 869)T⁄C ) من متباينة الاشكال (T∕C) و9 (15%) متماثلة الاشكال (TT) و(8%) 5 متماثلة الاشكال (CC) ,واظهرت النتائج ان(Tallele) الاكثرعددا ونسبة مقارنة مع( C allele) . كما اظهرت الاليلات والمورثات عدم وجود فروق معنوية ذات دلائل احصائية بين المرضى ومجموعة السيطرة بين نوعي المرضى ( المزمن والحاد ) كما لوحظ ان المرضى المصابين بالحصى المرارية الاكثر صلة بالموروثات متباينة الاشكال (T⁄C) للحصى الكوليسترولية تليها المختلطة ثم الصبغية . واظهرت نتائج التنوع النيوكليوتيدي المفرد (41.6%)25 : IL - 8( - 251) T/A من متماثلة الاشكال متباينة الاشكال من متماثلة الاشكال (TT) واظهرت النتائج ان هو الاكثرعددا ونسبة مقارنة مع لمرضى التهاب الحرارة كما اظهرت الاليات والموروثات عدم وجود فروق معنوية ذات دلائل احصائية بين المرضى ومجموعة السيطرة بين نوعي المرضى )المزمن والحاد ( كما لوحظ ان المرضى المصابين بالحصى الاكثر صلة مع الموروثات متماثلة الاشكال((AA للحصى الكوليسترولية تليها الصبغية ثم المختلطة . | The study included 100 patients taken randomly (87 females and 13 males) undergoing cholecystectomy at the general teaching Hilla Hospital from September 2016 to June 2017. For each patient, two samples were taken which included the blood samples and gallstone for immunogenetic tests. The infection appears in both sexes with age group (31 - 40) years 30% but the rate of infection in female was higher than males 87%, 13% respectively.Clinically, chronic cholecystitis was the most common (84 %) and acute cholecystitis (16 %). The study displayed that the formation of gallstones is less than 10 years old. The gallstones are formed by age and gradually decrease after age 60. The most common types of gallstones were cholesterol stones and pigment stone followed by mixed stone The immunological study included estimatation the level of IL - 8, TGF - β1 in patients serum by using ELISA technique. The estimation of TGF - β1level explained a significantly increased in all patients (chronic and acute inflammation) compared with the control group with a significant difference . P=0.007, p<0.05. Estimation of TGF - β1 level showed increases in both the sexes (females and males) compared with the control group with a significant difference . (p=0.002. P< 0.05) for females, (p=0.003. P< 0.05 for males). As for the stone, the results of the present study revealed increased levels of TGF - β1 in serum patients had cholesterol stone with value followed the pigment stone and mixed stone. The estimation of IL - 8 level explained a significantly increased in all patients(chronic and acute inflammation) compared with the control group with a significant difference. P=0.005 , p<0.05. Estimation of IL - 8 showed increases in both sexes (females and males) compared with the control group with a significant difference (p=0.01. P< 0.05) for females, (p=0.02. P< 0.05 for males). As for the stone, the results showed that IL - 8 concentration was increased in patients serum had mixed stone followed cholesterol stone and pigment stone. The genetic study involved screening of TGF - B1 ( - 869 T/C) and IL8 - ( - 251 T/A) related to gallbladder infection patients for 85 samples, including patients and the control group by using (ARM - PCR) technique. The single nucleotide polymorphism of TGF - β1 ( - 869 T/C) showed : TC heterozygous was a higher rate with 46 (76.6%), TT homozygous with 9 (15%) and CC homozygous with 5 (8%) and the result revealed that the T allele more predominant than the C allele. The genotype and allelic association of TGF - β1 appeared no significant differences between the patients and the control group. The gallstone types association with genotype of TGF - β1 for patients appeared the genotype of T/C higher percentage in patients with who had cholesterol stone followed by mixed stone and pigment stone. An another single nucleotide polymorphismof of IL8 - (251T/A) showed : AA homozygous was a higher rate with 25 (41.6%), TA heterozygous with 23 (38%) followed by the TT homozygous just 12 (20%) and the result revealed that the A allele more predominant than the T allele. The genotype and allelic association of IL - 8 appeared no significant differences between the patients and the control group. The gallstone types association with genotype of IL - 8 for patients showed : The genotype of AA appeared higher percentage with patients who had cholesterol stone followed by pigment stone and mixed stone

دراسة فعالية انزيمات الفوسفاتيز القاعدي, الاسبارتيت ناقل مجموعة الامين واللاكتيت منزوع الهيدروجين في البلازما المنوية للمرضى العقيمين == Study the activity of Alkaline Phosphatase, Lactate Dehydrogenase and Aspartate Aminotransferase in the Seminal Plasma of Infertile Men

Author name: كرار صالح مهدي جاسم الخفاجي
Supervisor name: فارس ناجي عبود الهادي
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Babylon
First pages:
Abstract: تعتبر بلازما السائل المنوي مهمة في العمليات الحيوية للنطف لابقائها حية وانتقالها خلال القناة التناسلية الانثوية, كما وتحتوي على العديد من المكونات المختلفة ومنها الانزيمات مثل انزيم الفوسفاتيز القاعدي (ALP) واسبارتيت ناقل مجموعة امين (AST) واللاكتيت منزوع الهيدروجين (LDH) التي تدخل في العمليات الايضية المختلفة لتجهيز الطاقة اللازمة لحركة النطف. اجريت الدراسة على مرضى عدم الخصوبة الذين راجعوا مختبر مستشفى بابل للنسائية والتوليد والمختبرات الاهلية في محافظة بابل, شملت الدراسة 122 عينة من السائل المنوي لمرضى عدم الخصوبة و10 عينات للرجال الخصبين, خلال المدة من تشرين الاول 2016 الى اذار 2017. هدفت الدراسة الى مقارنة مستويات فعالية الانزيمات المذكورة في البلازما المنوية لحالات عدم الخصوبة المشمولة بالدراسة وهي مجاميع سويي النطف ووهن النطف ووهن وتشوه النطف وقلة النطف وقلة ووهن النطف وانعدام النطف مع مجموعة الخصوبة, بالاضافة الى دراسة العلاقات بين الانزيمات مع معالم النطف وتشمل حركة النطف عند مستوى( ا+ب) وتركيز النطف والنسبة المؤية للنطف غير السوية . اظهرت النتائج فروق معنوية (P˂0.05) في مستوى فعالية انزيم الفوسفاتيز القاعدي في المجاميع المختلفة حيث لوحظ اعلى مستوى في مجموعة الخصوبة تتبعها مجموعة سويي النطف ,بينما لم يلاحظ فروق معنوية (P˃0.05) بين مجموعتي وهن النطف ووهن وتشوه النطف, كما لم تظهر النتائج فروق معنوية بين مجاميع قلة النطف وقلة ووهن النطف وانعدام النطف التي اظهرت اقل مستوى للفعالية. بينت النتائج فروق معنوية (P˂0.05) في معدل فعالية انزيم اسبارتيت ناقل مجموعة امين في مجاميع عدم الخصوبة المختلفة, حيث كان اعلى معدل للفعالية في مجموعة الخصوبة ومجموعة سويي النطف ولم يلاحظ فروق معنوية (P˃0.05)بين مجموعتي انعدام النطف ووهن وتشوه النطف, كما لم يلاحظ فروق معنوية (P˃0.05) بين مجاميع وهن النطف وقلة النطف وقلة ووهن النطف التي اظهرت اقل مستوى للفعالية. كما واظهرت النتائج فروق معنوية (P˂0.05) في معدل فعالية انزيم لاكتيت منزوع الهيدروجين بين مجاميع عدم الخصوبة مقارنة مع مجموعة الخصوبة وسويي النطف التي اظهرت اعلى مستوى للفعالية , في حين كان اقل مستوى للفعالية في مجاميع قلة النطف وقلة ووهن النطف وانعدام النطف بينما لم يظهر فرق بين مجموعتي وهن وتشوه النطف ووهن النطف. كذلك بينت النتائج العلاقات بين مستوى فعالية الانزيمات ومعالم النطف حيث لوحظت علاقة سلبية بين فعالية انزيم الفوسفاتيز القاعدي وحركة النطف مستوى ا+ب في مجاميع سويي النطف وقلة ووهن النطف مقارنة بالعلاقات الايجابية في مجاميع وهن النطف ووهن وتشوه النطف اضافة الى مجموعة الخصوبة, كما ان لذات الانزيم علاقة سلبية مع تركيز النطف في مجموعتي سويي النطف وقلة النطف بينما ظهرت العلاقات الايجابية في مجموعة الخصوبة وقلة ووهن النطف, كما تم ملاحظة العلاقات السلبية لفعالية الانزيم مع النسبة المؤوية لتشوه النطف في كل من مجموعة الخصوبة وسويي النطف اضافة الى مجموعة وهن وتشوه النطف. نلاحظ ايضا من خلال النتائج وجود علاقة سلبية معنوية (P˂0.01) في مجموعة سويي النطف وعلاقة ايجابية معنوية ((P˂0.01 في مجموعة وهن النطف بين مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين وحركة النطف مستوى (ا+ب), كذلك نلاحظ وجود علاقة سلبية في مجموعة وهن وتشوه النطف بينما اظهرت مجموعة الخصوبة وقلة ووهن النطف علاقة ايجابية, كذلك بينت النتائج وجود علاقة ايجابية معنوية (P˂0.05) في مجموعة سويي النطف بين فعالية الانزيم المذكور وتركيز النطف, اما مجموعتي قلة النطف وقلة ووهن النطف اظهرت علاقة سلبية بينما كانت العلاقة الايجابية في مجموعة الخصوبة, بينت النتائج ايضا وجود علاقة سلبية معنوية (P˂0.05) في مجموعة سويي بين فعالية انزيم اسبارتيت ناقل مجموعة امين والنسبة المؤوية للنطف المشوهة, اما العلاقة الايجابية فظهرت في مجموعة وهن وتشوه النطف والعلاقة السلبية في مجموعة الخصوبة. اظهرت النتائج وجود علاقة سلبية بين فعالية انزيم لاكتيت منزوع الهيدروجين مع حركة النطف مستوى (ا+ب) في مجموعتي سويي النطف وقلة ووهن النطف بينما لوحظت العلاقات الايجابية في مجاميع الخصوبة ووهن النطف ووهن وتشوه النطف, بينت النتائج ايضا وجود علاقة سلبية معنوية (P˂0.05) بين فعالية الانزيم وتركيز النطف في البلازما المنوية لمجموعة قلة ووهن النطف بينما العلاقات السلبية كانت في مجاميع سويي النطف وقلة النطف بالمقارنة مع العلاقة الايجابية في مجموعة الخصوبة , كذلك بينت النتائج وجود علاقة سلبية بين فعالية الانزيم والنسبة المؤوية للنطف المشوهة في مجاميع وهن وتشوه النطف وسويي النطف ومجموعة الخصوبة. كذلك اظهرت النتائج العلاقات بين الانزيمات في المجاميع المختلفة فكان لفعالية انزيم الفوسفاتيز القاعدي علاقة ايجابية مع مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين في البلازما المنوية لمجاميع وهن النطف ووهن وتشوه النطف وقلة النطف , كذلك العلاقة السلبية لوحظت في مجاميع سويي النطف وقلة ووهن النطف ومجموعة الخصوبة , بينما اظهرت النتائج وجود علاقة سلبية معنوية (P˂0.05) في مجموعة انعدام النطف. نلاحظ ايضا وجود علاقة ايجابية بين مستوى فعالية انزيم الفوسفاتيز القاعدي وانزيم لاكتيت منزوع الهيدروجين في مجموعة سويي النطف بالمقارنة مع مجموعة الخصوبة وباقي مجاميع قلة الخصوبة التي اظهرت علاقات سلبية بين فعالية الانزيمين. بينت النتائج ايضا وجود علاقة سلبية بين مستوى فعالية انزيم اسبارتيت ناقل مجموعة امين ولاكتيت منزوع الهيدروجين في البلازما المنوية لكل من وهن وتشوه النطف وقلة ووهن النطف عندما تقارن بالعلاقة الايجابية في مجاميع الخصوبة وسويي النطف وقلة النطف وانعدام النطف, كذلك بينت النتائج وجود علاقة ايجابية معنوية (P˂0.05) بين مستوى فعالية الانزيمين في مجموعة وهن النطف. | A wide variety of biochemical components and enzymes are presented in the seminal plasma, the enzymes such as alkaline phosphatase (ALP), aspartate amino - transaminase (AST), and lactate dehydrogenase (LDH) are proved to be important for various metabolic processes which provide energy for livability, motility, and fertility of spermatozoa. This study aimed to compare the activity levels of Alkaline phosphates, Aspartate - aminotranferase and Lactate dehydrogenase enzyme in the seminal plasma of infertility patients include : normozoospermia, asthenozoospermia, terato - asthenozoospermia, oligozoospermia, oligo - asthenozoospermia, azoospermia and fertile men, in addition to study of inter relationships between these enzymes and with sperm parameters include : sperm concentration, motility )grade A+B(, and morphologically abnormal sperm. This study was conducted in the laboratory of Babylon Maternity and children teaching hospital and private laboratories during the period from October 2016 to March 2017. The study included 122 samples from different types of infertility and 10 samples from fertile men The results showed that there was a significant difference (p˂0.05) between the different groups of alkaline phosphatase enzyme. The fertile men have the highest level, followed by normozoospermia. No significant differences were observed between the oligozoospermia, oligo - asthenozoospermia and azoospermia which have the lowest level of activity and no highly significant differences between asthenozoospermia and terato - asthenozoospermia. A significant increase (P˂0.05) in the level of aspartate - aminotransferase enzyme between the different groups, the highest level of activity was observed in the group of fertile and normozoospermia. While no significant differences (P˃0.05) between the groups of azoospermia and terato - asthenozoospermia, the results also showed no significant differences (P˃0.05) between the groups of asthenozoospermia, oligozoospermia and oligo - asthenozoospermia which owns the lowest level of activity. The results revealed significant increase (P˂0.05) in an average of the activity level of Lactate dehydrogenase enzyme between the different groups, the highest level was shown in the groups of fertile and normozoospermia and the lowest level in the azoospermia, oligozoospermia and oligo - asthenozoospermia but asthenozoospermia and terato - asthenozoospermia have the same level of activity. The results showed a significant negative correlation (P˂0.01) between AST activity and sperm motility (grade A+B) in the normozoospermic patients, and significant positive correlation (P˂0.01) in the group of asthenozoospermia, also the results revealed significant positive correlation (P˂0.05) in the normozoospermic men between AST activity and sperm concentration. The morphological abnormal sperm has significant negative correlation (P˂0.05) with AST activity in the group of normozoospermia, and it was revealed a significant negative correlation (P˂0. 05) between LDH activity and sperm concentration in the seminal plasma of oligo - asthenozoospermia. Also the results showed a significant negative correlation (P˂0.05) between the activities of ALP and AST in the azoospermia, and significant positive correlation (P˂0.05) in the seminal plasma of asthenozoospermia between AST and LDH activity. It was concluded the importance of ALP, AST and LDH levels in detecting the ability of gland secretion and normal semen components

التباين الوراثي في جينات TNF - ?, VEGF - A and IL - 10 المصاحبة لداء الصدفية == Genetic Polymorphism in TNF - ?, VEGF - A and IL - 10 genes associated with Psoriaasis

Author name: خالد عبد الكاظم هادي الطائي
Supervisor name: علي حمود السعدي | وسام علي امين عوض
General topic: Biology
Specific topic: Biotechnologies
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: هدفت هذه الدراسة الى تقصي بعض التغايرات الوراثية لكل من (TNF - α, VEFGF and IL10) لدى مرضى داء الصدفية وعلاقتها بشدة الاصابة باستخدام تقنيات تفاعل البلمرة المتسلسل وتباين اطوال قطع التقيد . بينما قدر مستوى الحركيات المناعية باستخدام تقنية الايلايزا.اجريت هذه الدراسة في الفترة من نيسان 2016 الى اذار 2017، حيث جمعت العينات مرضى داء الصدفية المراجعين لمستشفى مدينة مرجان الطبية، محافظة بابل / العراق. شملت الدراسة 64 عينة لمرضى داء الصدفية 40) ذكر و24 انثى) يبلغ متوسط اعمارهم (9 - 70 سنة)، كما شملت الدراسة 38 شخصا من الاصحاء (21 ذكر و17 انثى) يبلغ متوسط اعمارهم 15 - 65 سنة كمجموعة السيطرة جارت مجاميع المرضى.اظهرت النتائج زيادة معنوية في مستوى كل من TNF - α وIL10 في المصل لدى مرضى داء الصدفية مقارنة بمجموعة السيطرة (P<0.01) . كما اظهرت الدراسة ارتباط معنوي بين مستوى TNF - α وشدة الاصابة ( - r=0.49, p=0.0001) بينما كان معامل الانحدار عكسي غير معنوي بين مستوى IL10 في المصل وشدة الاصابة ( - r= 0.29, P=0.0109) , وكان الانحدار عكسي معنوي بين مستوى IL10 و( - r= - 0.29) (p=0.0028) TNF - α. كما اظهرت النتائج ارتفاعا معنويا (P<0.01) في مستوى VEGF في المصل لدى مرضى داء الصدفية مقارنة بمجموعة السيطرة بينما كان الانحدارغير معنويا بين مستوى VEGF وشدة الاصابة( - r= - 0.05) .اظهرت النتائج وجود ثلاث انماط وراثية للتغايرات في موقع الجين TNF - α - 308 حيث كانت النسب AA 5 (7.81%) ,AG 24 (37.50% وGG 35 (54.69% في مجموعة السيطرة كانت 10 (26.31%) , 16 (42.11% و12 (31.58% اما توزيع الانماط الوراثية الناتجة من تحليل جين VEGF+405 كان النمط الوراثي CG هو السائد 24 (37.05) لدى مرضى الصدفية والنمط الوراثي CC هو الاقل ظهورا 1 (1.56%).. اضافة الى ذلك اظهر نتائج تحديد تتابع النيكليوتيدات للموقع الوراثي IL10 - 1082 نمطين وراثين حيث كان النمط الوراثي GG هو الاكثر تواجدا لدى مرضى داء الصدفية ( 47.5%) والنمط GA بنسبة (28.5%) مقارنة بمجموعة السيطرة التي جاءت جميعها بالنمط الوراثي GG. | Psoriasis is an immune mediated skin disease with a wide - world prevalence involves both genders and different age, it is a multifactorial disease influenced by genetic and environmental factors. The current study aims to evaluate the association of (Interleukin 10, Tumor Necrosis Factor - α and Vascular Endothelial Growth Factor) genes polymorphism in psoriasis. Single Nucleotide Polymorphism (SNPs) determined by Polymerase Chain Reaction (PCR), restriction fragment length polymorphism (PCR - RFLP) and DNA sequencing techniques, while there serum levels determined by ELISA. This case - control study is done in a period of March 2015 to December 2017, where the samples collected from Marjan Medical City in Babylon Province. The number of samples was (64) patients psoriasis (40 males and 24 females ) with an average age ( 9 - 70 year), (50) of them were with type 1 psoriasis and (14) type 2. In addition, the study included 38 apparently healthy people who were (21 males and 17 females) with an average age (15 - 65 year), as control matched with disease group. The present study revealed a significant increasing (P<0.01) of Tumor Necrosis Factor - α (TNF - α) and Interleukin 10 (IL10) in patients compare with controls. In addition, there is a significantly regression between severity of disease and TNF - α serum level (r =0.49, p=0.0001) and non - significant invers regression with IL10 serum level (r= 0.29, P=0.0109). In addition, the results established an A significant negative correlation which has been found between IL10 and TNF - α (r= - 0.29) (p=0.0028). Physiological, the study shows significant increasing in Vascular Endothelial Growth Factor (VEGF) level in patient compare with control (P<0.01). There is no correlation between Vascular Endothelial Growth Factor (VEGF) serum level and severity or onest of disease (r= - 0.05).Genetically, analysis of the Single Nucleotide Polymorphisms PCR - RFLP genotyping for TNF - α - 308 G/A (rs1800629) SNP, Genotype distribution in patient were GG 35 (54.69%), AG 24 (37.50%) and AA 5 (7.81%) while in control were AG16 (42.11%), GG 12 (31.58%) and AA10 (26.31%).The genetic analysis of the Single Nucleotide Polymorphisms of VEGF +405 SNP, genotype distribution CC homozygous was predominant in patient 39(60.94%) and GG homozygous was 24 (37.05) While the GCwas the least 1 (1.56%). Comparing with the control group was CG 18(47.37%), CC 13(34.21%) and GG 7(18.42%).On the other hand , the statistical analysis for the role of genotyping for TNF - α - 308 SNP in the Serum levels of TNF - α were different between TNF - 308 AA (126.90 ± 14.96) patients and TNF - α GA(106.55 ± 16.42) and GG (57.94 ± 7.72) genotypes (p < 0.01). Analysis for the role of genotyping for VEGF +405 SNP non - significant difference between homozygous CC (408.30 ± 0.00), homozygous was GG (326.00 ± 34.81) and heterozygous CG (376.41 ± 58.63).This result promotes that the both of TNF - α - 308 SNP polymorphism and VEGF +405 SNP strongly implicated in the pathogenicity, severity and onest of psoriasis.PCR - sequencing for IL10 - 1082 A/G (rs1800896) locus shows a significant difference of percentage distributions of alleles and genotypes for IL10 - 1082 (rs1800896) locus between patient and control, GG homozygous was predominant in patient (71.5%) while the AG heterozygous was (28.5 %). Comparing with control group GG (100%).

تحضير وتوصيف المركبات النانوية ودراسة الفعالية المضادة للبكتريا == Synthesis, Characterization and Antibacterial Activity of Synthesized Nanoparticles

Author name: علي جبار عبد الحسين رضا الكواز
Supervisor name: فريال جميل عبد عطية | اياد فاضل محمد القيم
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:

الفعالية الحياتية لبعض مستخلصات النباتات الطبية على بعض انواع البكتريا والتعبير الجيني لانزيمات الكيراتينز المنتج من قبل Trichophyton rubrum == Biological Activity of some Medicinal Plant Extracts on some Bacteria and Gene Expression of Keratinases Produced from Trichophyton rubrum

Author name: علي جليل عبيد حسن عينون
Supervisor name: جواد كاظم عبود علي الجنابي | وجدان رضا محمود محمد تاج الدين
General topic: Biology
Specific topic: Microbiology
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: The present study aimed to search for safe and effective antifungal agents through investigation of the phytochemical characterization and bioactive properties of medicinal plants (Pimpinella anisum essential oil and Moringa oleifera and Malva sylvestris leaf extracts) and their effect on gene expression of keratinases produced by T. rubrum using Real Time PCR.Phytochemical analysis of active materials of P. anisum essential oil and M. oleifera leaf extracts were carried out, through TLC accompanied autobiography, high performance liquid chromatography (HPLC) and GC - MS analyses were proceeded to relate the chemical profile with their antifungal activity. Also, the cytotoxic effects of active compound and crude extract for both plant extracts were determined using MTT (3 - (4,5 - dimethylthiazol - 2 - yl) - 2,5 - diphenyltetrazolium bromide dye) assay. Screening the antifungal activity of Pimpinella anisum essential oil, Moringa oleifera leaf extracts and four traditional antifungal agents against growth and development of two strains of T. rubrum differed in their virulence were conducted. MIC for crud extracts and antifungal agent were also determined using microdilution plate, moreover, the effects of crud extracts and active compounds on gene expression was evaluated.Qualitative TLC, HPLC analysis for the anise essential oil extract revealed the presence of anethole which was identified as a main volatile compound in this extract which was identified as anethole. GC - MS analysis also revealed that trans - anethole is the major compound (96.8%), then Himachalene (1.84%), other components were also present but less than 1% e.g. Estragole, cyclohexene and 2 - Methoxy - 5 - (1 - propenyl) phenol. On the other hand, LC - MS analysis were showed the existence of that keratinase inhibitor (extracted from Moringa oleifera leaf)IICryptochlorogenicacid (C16H18O9), Astragalin (C21H20O11), so the presences of these compounds reflected the inhibitory effects on keratinase enzyme.The results upon screening, revealed that the anise oil inhibited both strains of T. rubrum, since the growth inhibition for first strain were 21, 30 and 39 mm at 15.6, 31.2 and 62.5 μl/ml respectively, while in second strain were 24, 32 and 39 mm at 15.6, 31.2 and 62.5 μl/ml respectively. The tested strains of this fungus revealed substantial sensitivity pattern toward crude extract of essential oil and anethole as well. Results showed that there was considerable growth inhibition for both strains of T. rubrum at minimal inhibitory concentrations (MIC) between 15.6 μg/mL for crude oil and 7.5 μg/mL for anethole. The inhibition in radial growth due to the effect of anise essential oil increased from 56% at 3rd day to 86% at the 7th day. Sporulation was substantially decreased by anise oil treatment. Anise oil was significantly inhibited conidial germination for both strains. Treatment with anise oil induced morphological changes in the conidial group where the conidia were absent in treated sample. Protease inhibitor isolated from mature leaves of M. oleifera showed great ability to inhibit keratinase activity of T. rubrum.MTT assay revealed that anethole is safe as phototherapeutic agents, when it is having no effects on normal cell, but shown anticancer activity against cancer cell.Anise oil, anethole, M. oleifera crud inhibitor, Cryptochlorogenic acid and Astragalin showed high inhibitory effects on gene expression of keratinase enzyme in both strains of T. rubrum KP979791 and KP979787.

تاثير السموم الكبدية الـMicrocystin - LR على الصفات البايوكيميائية والجزيئية في الكارب الاعتيادي والجرذ == The Effects of Hepatotoxic Microcystin - LR on Biochemical and Molecular Characteristics of Cyprinus carpio and Rattus rattus

Author name: ماهر محمـــد خضـــيري الجبــــــوري
Supervisor name: مؤيد جاسم ياس العماري | اياد محمد جبر المعموري
General topic: Biology
Specific topic: Zoology - Pollution
Degree: Doctorate
Language: English
University location: Babylon
First pages:
Abstract: صممت الدراسة الحالية لدراسة تاثير السموم الكبدية الـMicrocystin - LR على الصفات البايوكميائية والجزيئية في الحيوانات المختاره (الكارب الاعتيادي والجرذ) حيث كان تركيز microcystin - LR المنقى من Anabaena circinalis وOscillatoria splendida 74.832 مايكروغرام / مل61.85 مايكروغرام/ مل على التوالي الذي تم الكشف عنه وجمعه بواسطة الكروماتوكرافية السائلة فائقة الاداء التحضرية بينما كان تركيزه في Westiellopsis prolifica وStigonema sp هو 28.385 مايكروغرام/مل و23.591 مايكروغرام/مل على التوالي. استخدمت تراكيزالــmicrocystin - LR للجرذ واسماك الكارب الاعتيادي عن طريق حقنها تحت الغشاء البريتوني خلال التعرض الحاد الحادة (96 ساعة) , كانت ( 60 , 40 , 20 ) مايكروغرام /200 غرام من زون الجسم , ومن ثم تحديد الجرعة المتوسطة المميتة للجرذ واسماك الكارب الاعتيادي وكانت (52.48 و67.95) مايكروغرام / 200 غرام من وزن الجسم على التوالي . بينما في التعرض المزمن ( 30 يوم ) ،كانت التراكيز المستخدمة هي (3 و6 و9) مايكروغرام/ 200 غرام من زون الجسم. بينت نتائج الدراسة الحالية زيادة معنوية في كل المؤشرات البايوكيميائية مع زيادة الجرعة الــMicrocystin - LR في دم وكبد الجرذان واسماك الكارب الاعتيادي خلال التعرض الحادة ، لكن خلال التعرض المزمن ايضا ازدات كل المؤشرات البايوكيميائية زيادة معنوية مع زيادة تركيز الــMicrocystin - LR ، بينما قلت تركيز مضادات الاكسدة الكلية والسايتوكروم P450 والفوسفيتيز القاعدي في الدم والكبد والـGOT في دم الجرذ بشكل معنوي مع زيادة تركيز الجرعة الــmicrocystin - LR بالمقارنة مع مجموعة السيطرة ، بينما في اسماك الكارب الاعتيادي ، تركيز فيتامين C والسايتوكروم P450 في الدم والكبد ، والفوسفتيز القاعدي والـGPT في الكبد حيث قل بشكل معنوي مع زيادة تركيز الـmicrocystin - LR بالمقارنة مع مجموعة السيطرة. بينت ايضا نتائج الدراسة الحالية الحصول على ست انواع من التشوهات الكروموسومية هي الكروموسومات الحلقية والكروماتيد المتكسر وكروموسومات المتقطعة وكروموسومات القلة وثنائية المركز خلال الفترة المزمنة في نخاع العظم للجرذ والكبد الاسماك الكارب الاعتيادي ، فان عدد كل نوع من التشوهات الكرموسومية في الجرذ واسماك الكارب الاعتيادي ازدادت بشكل معنوي مع زيادة تركيز الــmicrocystin - LR ، اظهر التحليل الاحصائي ارتباط معنوي موجب بين التشوهات الكروموسومية والمؤشرات البايوكيميائية ومؤشرات تحطم الـDNA ، اما دليل الانقسام الخلوي ازداد بشكل معنوي مع .زيادة الجرعة في نخاع عظم الجرذ وكبد الكارب الاعتيادي بالمقارنة مع مجموعة السيطرة . المؤشرات الجزيئية للــDAN المتحطم كالطول المذنب Comet lengthو طول الذنب Tail length وهجرة الذنب Tail moment في دم وكبد الجرذ واسماك الكارب الاعتيادي ، والتي ازدادت بشكل معنوي مع زيادة جرعة الــmicrocystin - LR ، ايضا اظهرت النتائج ارتباط معنوي موجب مع المؤشرات البايوكيميائية والتشوهات الكرموسومية ، ايضا بينت الدراسة الحالية بان تحطم الـDNA في الكبد اكثر مما في الدم . | The presents study was designed to study the effects of hepatotoxic microcystin - LR on biochemical and molecular characteristic of selected animals (Cyprinus carpio and Rattus rattus) Whereas the concentration of microcystin - LR obtained from Anabaena circinalis and Oscillatoria splendida that purification and collection by utilizing preparative high performance liquid chromatography was 74.832 µg/ml and 61.85 µg/ml respectively. While its concentration in Westiellopsis prolifica and Stigonema sp was 28.385 µg/ml and 23.591 µg/ml respectively The concentrations of toxin that used for rats (Rattus rattus) and common carp (Cyprinus carpio) via intraperitoneally injection during acute period (96 h) was (20, 40, 60) µg/200g body weight and then determination of median lethal dose for rats and C. carpio was (52.48, 67.95) µg/200g body weight respectively, While in chronic period (30 days), the concentrations used for above animals was (3, 6, 9) µg/200g body weight . The results of presents study was showed all biochemical markers significantly increased with increasing dose of microcystin - LR in blood and liver of rats and C.carpio during acute period, but in chronic period also all biochemical markers in blood and liver of rats and C.carpio have been significantly increased with increasing concentration of microcystin - LR, Whereas the total antioxidant concentration, Cytochrome P450 and Alkaline phosphatase in blood and liver, and GOT in blood of rats were significantly decreased with increasing concentration of dose of microcystin - LR as compared with control groups, While in C. carpio, the concentration of vitamin C and Cytochrome P450 in blood and liver, and Alkaline phosphatase and GPT in liver were significantly decreased with elevated concentration of microcystin - LR as compared with control groups. The presents study was shown six type of chromosome aberration which are ring chromosomes, chromatid break, fragmented chromosomes, aneuploidy and dicentric chromosomes that are obtained during chronic exposure period in bone marrow of rats and liver of C. carpio, the number of each type of chromosome aberration in rat and C .carpio have been significantly increased with increasing microcystin - LR concentration, the statistical analysis appeared positive significant correlation between chromosome aberration, biochemical markers and marker of DNA damage. The mitotic index was significantly increased with increasing microcystin - LR concentration in bone marrow of rats and in liver of C .carpio as compared with control groups. The molecular makers of DNA damage such as comet length, tail length and tail moment in blood and liver of rats and C .carpio were significantly increased with increasing concentration of microcystin - LR, also appearance of results positive significant correlation with biochemical markers and chromosome aberration and also presents results shown the DNA damage in liver more than in blood.

تاثير فقر الدم نقص الحديد على التغيرات النسيجية الشكلية لمشيمية النساء الحوامل == Effects of anemia ( iron deficiency ) on morphohistological of placenta pregnant women

Author name: اية حامد حمد الحكيم
Supervisor name: رفاه هادي لطيف
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Babylon
First pages:

دراسـة لبعــض المؤشــرات المناعيــة والدمــوية لمرضى عراقيــين يعانــون من فــرط الحساسيه النــوع الاول == Study of Some Immunological and Hematological Changes in Iraqi Patients Suffering from Hypersensitivity Type - 1

Author name: سرى مسلم داود الاعــــــرجي
Supervisor name: طالب عبد الله حسين
General topic: Biology
Specific topic: Microbiology
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: قد تم تصميم هذه الدراسة لتسليط الضوء على دور بعض الحركيات الخلويه ( IL - 13, IL - 18) والكلوبيولين المناعي الكلي ((T - IgE والكلوبيولين النوعي(S IgE) ل 20 مسبب للحساسيه داخلي وخارجي واعداد خلايا الحمضات. وكان مجموع مرضى الحساسية 168، [99 مريضا بالربوالتحسسي (43 ذكرا)، (56 انثى)]، [69 مريض بالتهاب الجيوب الانفيه التحسسي (29 ذكرا)، (40 انثى)]، وجمعت اربعين عينه لاشخاص اصحاء [ (15 ذكور)، (25 اناثا )]. الفئة العمرية (5 - 60) سنة تم جمعها من المركز التخصصي للحساسية في بغداد / الرصافة وخلال الفترة من تشرين الثاني 2016 الى شباط 2017. تمت دراسه بعض التغيرات الدمويه ومنها قياس نسبه ال (Hb) والعدد الكلي لخلايا ال (WBC) واعداد خلايا الحمضه لجميع المرضى والاصحاء عن طريق استخدام محلل الالي (Beckman Coulter) والعده الخاصه بالجهاز . تم قياس الاختبار المناعي (IL - 13, IL - 18, T - IgE) لجميع المرضى والاصحاء باستخدام جهاز (ELISA ) والعدد الخاصه بالاختبارات. تم قياس الكلوبيولين النوعي (Spesific IgE) الخاص بالمحسسات المستنشقه (عث الفراش، الحيوانات الاليفه ,الصرصر، الاعفان، حبوب اللقاح الاعشاب، حبوب اللقاح الاشجار ,حبوب اللقاح الحشائش) لجميع المرضى والاصحاء باستخدام تقنيه (Western Immunobloting Electrophoresis test) والعده الخاصه بالجهاز والفحص (Euro line Inhalation Profile Kits).توصلت هذه الدراسه الى النتائج التاليه : 1 - عدم وجود فروق معنويه بين المجاميع المدروسه طبقا للجنس . 2 - عدم وجود فروق معنويه بين مرضى الربوالتحسسي الذين لهم تاريخ عائلي ايجابي وسلبي. بينما كانت هناك فروق معنويه بين مرضى التهاب الجيوب الانفيه التحسسي الذين لديهم تاريخ عائلي سلبي وايجابي .3 - احصائيا، كانت الفئة العمرية و(21 - 40) الاكثر شيوعا في مرضى الربو التحسسي والتهاب الجيوب الانفيه التحسسي حيث بلغت نسبتها المئويه على التوالي[63، 63.6٪)، (47،68.1٪)].4 - زيادة معنوية في النسبه المئويه لاعداد الحمضات (٪) ومستوى الكلوبيولين المناعي الكلي ( T - IgE) ظمن مجموعتي الحساسية مقارنتا بمجموعه السيطره.5 - اظهرت النتائج وجود فروق معنويه بين اعداد المرضى الذين لديهم الكلوبيولين المناعي الخاص بالمحسسات ((Spesific IgE واعداد المرضى ذوي النتيجه السالبه لدى مرضى الربو التحسسي والتهاب الجيوب الانفيه التحسسي . 6 - سجل محسس الصراصر اعلى نسبة محسس لدى مرضى الربوالتحسسي وتلتها مسببات الحساسية للحيوانات الاليفة وحساسية حبوب اللقاح. بينما في مجموعة التهاب الجيوب الانفيه التحسسي اعلى نسبة محسسات كانت للحيوانات الاليفة وتلتها حبوب لقاح الحشائش .7 - زيادة معنويه كبيرة في مستوى الحركيات الخلويه (IL - 13, IL - 18) عند مرضى الربو التحسسي والتهاب الجيوب الانفيه التحسسي .8 - وجود علاقة ارتباط معنوية كبيرة بين النسبه المئويه لاعداد خلايا الحمضات والكلوبيولين المناعي الكلي( T - IgE) في مرضى الربو التحسسي والتهاب الجيوب الانفيه التحسسي r = 0.424)، (P = 0.00 | This study is designed to shed light on the role of IL - 13, IL - 18, T - IgE, Spesific IgE for 20 Indoor and outdoor inhalant allergens in some of type - 1 allergic disease and Eosinophil cells count . The Total allergic patients have been 168, 99 asthmatic patients (43 male ), (56 female ), 69 Rhinitic patients (29 male ), (40 female) and Apparently Healthy Control AHC 40 (15 male ) , (25 female ). Their age group (5 - 60) years . The groups have been collected from the Specialized Center Of Allergy in Baghdad / AL - Resafa and during the period from October 2016toFebruary2017. Some Hematological changes have been studied, including the measurement the Hb% , total count WBC, and eosinophil cells % for all subject by using automated analyzer (Beckman Coulter Analyzer). Beside some Immunological changes were studies including (IL - 13, IL - 18 and total IgE) which have been measured for all subjects by using Enzyme Linked Immunosorbent Assay (ELISA) . The measurement of serum specific IgE for some inhalant allergens (HDM, Pits, Cockroach, Mites, Grasses pollen, Tree pollen and Weed pollen ) allergens for all subject by using Western Immunobloting test. The Study has reached the fallowing results.1 - There are no significant differences between the studied groups according to gender.2 - There are significant differences in family history between rhinitis group and control. 3 - Statistically, the age group (21 - 40) are most frequent within allergic asthma and rhinitis are (63, 63.6%), (47,68.1%) respectively. 4 - Highly significant increase in Eosinophil count (%) and total IgE within allergic groups when compared with control. 5 - Highly significant differences between positive specific IgE inhalant allergens (positive) and negative patients in asthma and rhinitis groups. 6 - The cockroach allergen records the highest percentage in asthmatic patients fallowed by pets allergens and grasses pollen allergens. While in rhinitic group the highest percentage is for pets allergens fallowed by grasses pollen , cockroach allergen. 7 - Highly significant increase in IL - 13 and IL - 18 level in asthmatic and rhinitic patients. 8 - Highly significant correlation between eosinophil cells count (%) and total IgE In asthmatic and rhinitic patients (r = 0.424 ), (P=0.00).

العلاقة بين المشعرات المهبلية والعوامل المرضية التناسلية الاخرى بين النساء في مدينتي كركوك وتكريت == Relationship Betwee Trichomonas Vaginalis And Other Genital Infectious Agents Among Women In Kirkuk & Tikrit Cities

Author name: برهان احمد محمد علي بيباني
Supervisor name: يحيى جرجيس سلمان | ابراهيم شعبان داود
General topic: Biology
Specific topic: Zoology
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: تم خلال الفترة من الخامس عشر من شهر تشرين الاول 2006 ولغاية الثلاثين من شهر حزيران 2007 اجراء دراسة عن وبائية طفيلي المشعرات المهبلية وبعض مسببات الالتهابات المهبلية الافرازية المرافقة وغير المرافقة لها بين النساء المراجعات لقسم الاستشارية النسائية والتول | An epidemiological study was carried out from 15th, October 2006 to 30th, June 2007 for prevalence of Trichomonas vaginalis parasite and some causative agents of secretary vaginal inflammations associated or non - associated with the parasite among women attending the department of Obstetrics and Gynecology in two General hospitals in Kirkuk city and Tikrit teaching hospital in Tikrit city. A total of 300 samples (200 in Kirkuk, 100 in Tikrit) were colle - cted from (15 - 47) years old women. Two swabs were taken from the vaginal (high vaginal) and the lining of uterus cervix (endocervical) for each woman by Gynecologic physician. A gross examination of the swabs was done to determine the color of vaginal secretions and measurement of pH. A wet preparation was done from the (high vaginal swab) and examined microscopically for diagnosis of Trichomonas vaginalis and Candida spp. In addition a Gram stain smear was prepared from a portion of the same swab and examined by oil - immersion for diagnosis of Neisseria gonorrhoeae and Trichomonas vaginalis. A chemical test was done for the detection of Gardnerella vaginalis bacteria & Candida spores. The swabs prepared from endocervical were treated by ACON - Chlamydia Kit specific for diagnosis of Chlamydia trachomatis in vaginal swabs samples. The study concluded the following results : 1 - The infection with various sexually transmitted diseases agents were 68% , 78% in Kirkuk & Tikrit cities respectively (P>0.05).2 - The maximum infection rate for T. vaginalis was 19.5% in Kirkuk city & 16% in Tikrit city among co - infection with other agents and single infections.3 - The percentages of single infections with T. vaginalis alone for various age groups were 16.5%, 8% in Kirkuk and Tikrit cities respectively (P>0.05).4 - The rate of infections with various vaginal micro - organisms were in the following sequence : T. vaginalis (19.5%), G. vaginalis (18.5%), C. trachomatis (14%), Candida spp. (11.5%) & N. gonorrhoeae (4.5%) in Kirkuk city, whereasin Tikrit city the sequence of infection rates were as follows : G. vaginalis (43%), T. vaginalis (16%), C. trachomatis (12%), Candida spp. (6%) & N. gonorrhoeae (1%).(P>0.05).5 - The highest rates of infections with T. vaginalis only as a single infecting agents were 21.27%, 10% among a group age range (36 - 45) years in both Kirkuk & Tikrit cities respectively (P<0.05). 6 - The maximum rate of infection with the T. vaginalis were recorded among women with yellowish vaginal secretions without itching (37%), (31.25%), whereas in those with symptoms of copious secretions onlythe corresponding figures (30.17%), (18.51%) were recorded in bothcities respectively (P<0.05). 7 - The maximum infection rate with C. trachomatis in bloody swabs were (40%), (50%) in Kirkuk & Tikrit cities respectively correlated withclinical signs & symptoms. However, maximum infection rate with G. vaginalis was recorded in women with whitish vaginal discharge (60.86%) or yellowish (53.12%) then greenish (52.94%) in Tikrit city in comparison to Kirkuk city. The maximum infection with G. vaginalis were among women with bloody secretion (40%) followed by whitish secretion (30.35%). (P<0.05). 8 - The maximum infection rate with Candida spp. were recorded in women discharge milky secretions (33.33%), (25%) in Kirkuk & Tikrit cities respectively. Infection with N. gonorrhoeae showed different color vaginal discharge (P>0.05).9 - The maximum rate of infections with T. vaginalis (27.43%), (19.69%) were recorded in women whose pH of vaginal secretion range was between (5 - 6). (P> 0.05). The high vaginal swabs have been revealed to be more efficient in diagnosis of vaginal infection with T. vaginalis than endocervical swabs. The maximum rate of infections recorded by these swabs were (22.22%), (19.73%) respectively. The infection rate of pregnant women were (48%), (22.22%) from positive cases in both cities.10 - The maximum rate of infections with T. vaginalis were recorded in women using various contraceptive, women using intrauterine contraceptive device were the highly infected (33.33%), (31.57%) in both cities. P<0.05

تقييم دور الجين في دم نساء عراقيات مصابات بسرطان الثدي == Evaluation The Rule of Mammoglobin A Gene In Blood of Iraqi Women With Breast Cancer

Author name: نانسي فيصل رشيد
Supervisor name: امنة نعمة الثويني
General topic: Biology
Specific topic: Biotechnologies
Degree: Master
Language: English
University location: Baghdad
First pages:
Abstract: Mammaglobin A is a member of the superfamily of secretoglobins. Its expression is highly specific for mammary tissue and has been shown to be overexpressed in breast tumor tissue, indicating that mammaglobin A might confer a growth advantage to mammaglobin A - expressing tumor cells. The present study was undertaken to develop the mammaglobin A as a serum biomarker for the early detection of breast cancer, and breast cancer patients follow up after treatments. This study had taken ten months, it involved 84 patients with age ranged 15 - 74 years who had diagnosed with either stage I to III breast cancer or benign lesions of breast at certain Iraqi hospitals and breast cancer centers, and a total number of 10 apparently healthy individuals, with comparable age range of patients as control group.Ten ml of venous blood was collected from studied groups in order to be used for measuring estrogen and progesterone levels, Reverse transcription polymerase chain reaction (RT - PCR) test for detection of their serum m - RNA mammaglobin A existence, and serum mammaglobin A levels using Enzyme - Linked ImmunoSorbent Assay (ELISA) technique. Demographic study revealed that most cases enrolled in this study were women within their reproductive age 25 - 44 years old. Distribution of patients according to age group, marital status, and lactation status showed no statistically significant association (P>0.05) with any of these variables, in all comparison.The hormonal study states that elevated levels of estrogen were observed in 52 (62%) patients, also decrease in progesterone levels were observed in 50 (59%) patients out of the 84 cases studied. This indicate a highly significant SUMMARYassociation (p < 0.01) between breast cancer risk, elevated estrogen levels, and decrease in progesterone levels. Mammaglobin A protein was detectable by ELISA in 100% of breast cancer patients (65 case), and not in any benign tumor patients (19 case) nor healthycontrol women (10 females) which indicate the highly specificity of ELISA test (P<0.01) for measuring mammaglobin A levels in patients serum. With high concentration of protein in sera of women with late stage of breastcancer compared with a low protein concentration in sera of women with early stage of breast cancer. By applying a statistical analysis on the result it was found that serum mammaglobin A ELISA test is highly significant (P<0.01) for, differentiation between patients with metastatic breast cancer and patients with early diagnosed breast cancer. In this work, SCGB2A2 gene which coded for mammaglobin A was detected in 64 out of 65 breast cancer cases, but not in the benign or healthy individuals indicating its high specificity as a marker gene (SCGB2A2) for cells derived from mammary glands. A statistical analysis was made for comparison between the three groups, E - Malignant Tumors \ Early Stage, L - Malignant Tumors \ Late Stage, and B - benign, (E, L, and B) which show that the results of molecular study of mammaglobin A detected by RT - PCR is statistically high significance (P<0.001) when used for the differentiation between E group and B group, also between L group and B group. The results showed that mammaglobin A can become an important tool for detecting primary and metastatic breast cancer, and predicting disease outcome.

تحضير لقاح مضاد للبكتريا المرضية المسببة لالتهاب القــدم السكري باستخدام التشعيع بالليـزر واطئ الطاقة == Preparation of Vaccine Against Diabetic Foot Pathogenic Bacteria Using Low Level Diode Laser

Author name: زينب عواد راضي محمد
Supervisor name: احسان فتح الله رستم محمد
General topic: Biology
Specific topic: Microbiology - Bacteria
Degree: Master
Language: English
University location: Muthanna
First pages:
Abstract: تهدف الدراسة الحالية الى تحضير نوعين من اللقاح (الحي المضعف، والمقتول) ضد البكتريا المسببة لحالات داء القدم السكري في الانسان، وذلك باستخدام اشعة الليزر ثنائي الصمام. تم جمع العينات من (40) شخص يعانون من التهاب القدم السكري، باستخدام مسحة قطنية معقمة Sw | The objective of this study is to prepare two types of vaccine (Live attenuated and killed vaccines) against pathogenic bacteria of diabetic foot infection in humans, using laser irradiation. Samples collected from forty patients suffered from diabetic foot infection, using sterile cotton tinge (Swab), the samples diagnosed depending on a number of morphological examinations, biochemical tests and culturing on selective media, as well as to use of the API system. The bacterial isolates obtained including the followings : Staphylococcus aureus (24.59 %), Klebsiella pneumoniae (22.95 %), Escherichia coli (21.31 %), S. epidermidis (9.84 %), Pseudomonas aeruginosa (9.84 %), Proteus mirabilis (8.20 %), and other species (3.28 %). The sensitivity of the bacterial isolates before irradiation to a number of antibiotics were examined, they all gave high resistance to the antibiotics, except two types (Amikacin & Ciprofloxacin), which the bacterial isolates were sensitive to. The bacterial isolates irradiated with laser using wavelengths (660, 820, and 915nm) to increase their sensitivity reaching to a step of attenuating or killing the bacteria with increasing exposure times. Then the attenuated and killed bacteria from each isolate used to prepare a mixed vaccine. Laser effect on the bacterial isolates showed a significant decrease in the viability of the bacteria of all species when the dose was increased, where occur killing the bacteria after 20 min and more of laser dose. The efficiency of the vaccine was tested by using laboratory animals, fifteen rabbits were used in the current study, they were divided into three groups with five rabbits each, one group for live attenuated vaccine inoculation, and the other one for the killed vaccine while the third group used as a control group. One month after the completion of the vaccination, the concentrations of the immunoglobulins (IgG, IgA, IgM C3, and C4) in the rabbit serum measured using Radial Immunodiffusion (RID) method.The results showed very high significant differences P < 0.001 for the level of IgG between the live attenuated vaccine group when compared with the control one, high significant differences P < 0.01 for the level of killed vaccine group compared with the control one.The results of IgA concentrations for the three groups were highly significant, P < 0.01, when comparing the attenuated with control group, while were significant, P < 0.05 between the killed vaccine group and the control one, it was also significant for the level of IgM, C3, and C4, when compared both the live attenuated and killed vaccine groups with the control one respectively. There were no significant differences between the live attenuated and the killed vaccine groups of all measured concentrations.Subsequently the animals inoculated again with a live dose of the bacterial isolates and the levels of (IgM, IgA, IgG, C3, and C4) were measured, the same results as in the vaccinations readings were obtained.Finally the animals were inoculated with the challenge dose of all the isolated live bacteria. The animals of the control group died, while the immunized animals remained healthy revealing the efficacy of the vaccine and the vaccination program.

دراسة نوعية مياه خزان الحبانية موقعيا والاستشعار عن بعد == Study of The Water Quality In Alhabbaniyah Reservoir In Situ And Remote Sensing

Author name: احمد عطا الله حسن الفهداوي
Supervisor name: عادل مشعان ربيع
General topic: Biology
Specific topic: Aquatic Environment
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:

العلاقة بين مؤشر الموت الخلـوي المبرمج (ربيطة فاس الذائبة) وقلة النطاف عند الرجال == Correlation Between Apoptotic Marker (Sfas Ligand) And Oligozoospermia In Men

Author name: احمد حسين علي الزاملي
Supervisor name: صباح ناصر العلوجي | انعم رشيد الصالحي
General topic: Biology
Specific topic: Zoology
Degree: Master
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: The Fibroblast associated (Fas) system in the testes has been identified as a key regulator of apoptosis, a process that greatly influences the germ cell population of the testes. and the soluble Fas Ligand (sFasL) may be a competitive inhibitor to induce apopto¬sis of the Fas baring cells. Therefore, this study measures the level of sFasL in the semen of oligozoospermic men evaluating the association between seminal plasma sFasL and spermatogenesis.A total 58 oligozoospermic men and 29 normozoospermic volunteers were included in this study. They were attending the Infertility Clinic of the High Institute of Infertility Diagnosis and Assisted Reproductive Technologies, AL - Nahrain University\ Baghdad. Their age mean was 31.77± 5.48 years and a median of 30 years. Semen samples were evaluated according to World Health Organization 2010 standard parameters. The Seminal plasma was separated from the cellular elements after centrifugation and the supernatant was transferred to plane tubes and frozen at - 20 ?C till using for measurement of sFasL. These patients were classified into patients with severe oligozoospermia (sperm concentration ?5 million / ml) which include 29 patients, and patients with mild and moderate oligozoospermia (sperm concentration ranging between 5 - 15 million / ml) which includes 29 patients as well. The control group comprised of 29 men with normospermic parameters according to WHO 2010 standard (Normal volunteers). The sFasL was measured using ELISA enzyme immunoassay for quantitative determination of sFasL Kit. Data were analyzed statistically using Analysis of variance (ANOVA), Least Significant Difference (LSD) and Correlation Coefficient (r).The sFasL level was found significantly higher (P< 0.01) in seminal plasma of oligozoospermic men, with weak correlation of the level of sFasL with the degree of severity of oligozoospermia. Based on the results of this study, it was concluded that sFasL is a novel marker found in the seminal plasma of oligozoospermic men. It's level was higher in cases of oligozoospermia regardless of its severity.

تكامل جرعة منخفضة من مبيد الترفلان مع مخلفات زهرة الشمس في مكافحة الادغال وتحسين نمو محصول الماش لتقليل الاعتماد على المبيدات والحد من مخاطرها == Integration of Reduced Dose of Trifluralin Herbicide With Sunflower Residues For Weed Control In Mungbean Field

Author name: اﺭﻭﻯ ﻋﺒﺪ ﺍﻟﻜﺮﻳﻢ ﺗﻮﻓﻴﻖ
Supervisor name: اﺑﺮﺍﻫﻴﻢ ﺷﻌﺒﺎﻥ ﺍﻟﺴﻌﺪﺍﻭﻱ
General topic: Biology
Specific topic: Plant - Physiology
Degree: Doctorate
University: University of Baghdad
Language: English
University location: Baghdad
First pages:
Abstract: Two field experiments, several greenhouse and laboratory experiments were conducted during the course of study to evaluate the allelopathic potential of two sunflower (Helianthus annuus L.) cultivars on companion weeds and weeds grown in mungbean (Vigna radiata L. R. Wilczek) field alone and in combination with reduced rate herbicide, and to determine the chemical and genetical bases of allelopathic traits in the test cultivars. The aim of the first experiment was to test whether the variation in weed growth between the sunflower cultivars (Shumoose and Sin Altheeb), which was observed in the field, was due to differences in their allelopathic potential. Results showed the ability of both cultivars to reduce weed population and biomass with the superiority of Shumoose cultivar in suppression of weed density at 60 and 120 days after sowing compared to Sin Altheeb. Weed biomass was significantly reduced up to 90 and 71% by Shumoose and Sin Altheeb cultivars, respectively. Stair case experiment indicated that root exudates of Shumoose cultivar showed more suppression to weeds than Sin Altheeb giving additional evidence for the superiority of Shumoose cultivar in its allelopathic weed suppression. Chemical analysis by High performance liquid chromatography indicated the presence of 9 compounds in root exudates of Sin Altheeb and 8 compounds in Shumoose, and all are Phenolic in nature. However, total of the isolated phenolics was doubled in Shumoose than in Sin Altheeb. Most of the isolated chemicals are reported to have inhibiting ability for germination and growth of plants, including weeds. Second field experiment was undertaken to explore the response of weeds and mungbean crop to soil incorporated with sunflower residues in combination with lower rate of a pre - plant herbicide (trifluralin). Sunflower residues of the two cultivars Shumoose and Sin Altheeb at 3.2 and 6.4 t ha - 1 were used either alone or in combination with trifluralin at 1.2 L ha - 1 (50% of label rate). Weedy check (control), trifluralin at full label rate (2.4 L ha - 1), and weed free treatments were also included for comparison. Plots treated with 50% of label rate of herbicide and amended with sunflower residues of cultivar Sin Altheeb recorded least weed density and dry biomass and this suppression was much greater than the residue treatments alone and more than cultivar Shumoose. Application of herbicide at 50% rate in plots amended with Sin Altheeb residue resulted yield 64 % more than with the label rate of herbicide treatment. Chromatographic analysis of sunflower amended field soil revealed the presence of several potent allelopathic compounds in the residues of both cultivars with greater quantity (355.5 µg/ml) in Sin Altheeb than in Shumoose (250.9 µg/ml). Dynamics of release, decomposition and degradation of allelochemicals into the soil showed that different compounds exhibited differential behavior for these processes. Overall quantity of allelochemicals started to increase after 2 weeks of decomposition and peaked at 4 week of decomposition (180.1 ppm) then declined sharply in their quantities thereafter. Periods indicating higher quantities of total phenolics as shown by chromatographic analysis was coincided with the periods in which higher suppressive activity against weeds grown under field conditions. Bioassay of sunflower residues decomposed in soil at different times on Echinochloa colonum L, one of the weeds dominated the mungbean field, revealed that residues of both cultivars suppressed growth of E. colonum weed. The phytotoxicity started after 2 weeks and persisted for 8 weeks. However, Sin Altheeb residues showed greater inhibition than Shumoose cultivar at the last three decomposition periods. Shumoose residues recorded appreciable reduction to the growth of test weed compared to Sin Altheeb. The effect of residues of both cultivars on chlorophyll content and ions uptake in Amaranthus retroflexus L. weed revealed that residues of both species reduced chlorophyll content of leaves and the reduction increased with the increased residue rate. Sin Altheeb cultivar residues were more inhibitory than Shumoose at the lower residue rate. In the same weed, ions uptake was significantly averted by the residues of both cultivars. P and K was significantly increased over control, while Ca, Mg an Fe were found to be decreased over control due to application of sunflower residues in soil at 8 g per kg soil. N was the only test element that did not significantly influence by the residue treatments. No significant differences were found in the test ion uptake between the test sunflower cultivars. Results of using RAPD technique on the sunflower genomic DNA revealed that all the 19 primers used in this study scored different amplification monomorphic and polymorphic bands in the tested genotypes with 12 primers generated polymorphic bands. These bands present in one cultivar and absent in another. They could be responsible for allelopathic trait or secondary compounds associated with this phenomenon. Further work is recommended to analyze the sequence of this band to find out whether it is related to allelopathic trait or not.
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